Evaluating the potential of treated effluent as novel habitats for aquatic invertebrates in arid regions

Hydrobiologia - Increasing anthropogenic demands for freshwater have altered many aquatic systems, including the drying of formerly perennial streams. The discharge of treated effluent has returned...     

Sodium extrusion by the sea-water-acclimated fiddler crab Uca pugilator: comparison with other marine crustacea and marine teleost fish.

1. Measurements of the blood Na concentration and transepithelial electrical potential (T.E.P.) across Uca pugilator acclimated to sea water indicate that Na is maintained out of electrochemical equilibrium with sea water. The resulting net Na influx as well as the sodium gain due to ingestion of the medium must be balanced by extrarenal Na extrusion. 2. The small T.E.P. (-0.7 mV) and the 'transport numbers' of Na and Cl indicate that the permeability to these ions is equivalent. 3. Removal of external K results in a significant stimulation of unidirectional Na efflux that is dependent upon external Na but is not inhibited by ouabain. 4. Transfer of Uca to K and Na-free sea water results in a 54% decline in unidirectional efflux, which is not due to T.E.P. changes. Readdition of 25mM-K stimulates Na efflux much more than can be accounted for by changes in the T.E.P. Readdition of 25mM-Na to potassium-free sea water does not change the Na efflux. 5. The results indicate that Na extrusion by Uca is via a Na/K exchange mechanism which partially inhibits Na/Na exchange. Cessation of Na/K exchange (in K-free sea water) removes this inhibition and allows rapid Na/Na exchange. It is not known whether Na/K and Na/Na exchange are via the same or parallel carrier systems.     

Processes that drive the population structuring of Jenynsia lineata (Cyprinidontiformes,Anablepidae) in the La Plata Basin

1. The distribution of genetic diversity across a species distribution range is rarely homogeneous, as the genetic structure among populations is related to the degree of isolation among them, such as isolation by distance, isolation by barrier, and isolation by environment.
2. Jenynsia lineata is a small viviparous fish that inhabits a wide range of habitats in South America. To decipher the isolation processes that drive population structuring in J. lineata, we analyzed 221 sequences of the mitochondrial cytochrome c oxidase I gene (COI), from 19 localities. Then, we examined the influence of the three most common types of isolation in order to explain the genetic variation found in this species.
3. Our results revealed a marked structuration, with three groups: (a) La Plata/Desaguadero Rivers (sampling sites across Argentina, Uruguay, and Southern Brazil), (b) Central Argentina, and (c) Northern Argentina. A distance‐based redundancy analysis, including the explanatory variables geographical distances, altitude, latitude, and basin, was able to explain up to 65% of the genetic structure. A variance partitioning analysis showed that the two most important variables underlying the structuration in J. lineata were altitude (isolation by environment) and type of basin (isolation by barrier).
4. Our results show that in this species, the processes of population diversification are complex and are not limited to a single mechanism. The processes that play a prominent role in this study could explain the high rate of diversity that characterizes freshwater fish species. And these processes in turn are the basis for possible speciation events.

     

Release of treated effluent into streams: A global review of ecological impacts with a consideration of its potential use for environmental flows

1. Worldwide, the addition of treated wastewater (i.e. effluent) to streams is becoming more common as urban populations grow and developing countries increase their use of wastewater treatment plants. Release of treated effluent can impair water quality and ecological communities, but also could help restore flow and maintain aquatic habitat in water-stressed regions. To assess this range of potential outcomes, we conducted a global review of studies from effluent-fed streams to examine the impacts of effluent on water quality and aquatic and riparian biota.
2. We identified 147 quantitative studies of effluent-fed streams, most of which were from the U.S.A. and Europe. Over 85% of the studies identified water quality as a primary study focus, including basic physical and chemical parameters, as well as trace organic contaminants. Nearly 60% of the studies had at least some focus on aquatic or riparian biota, primarily fish, aquatic invertebrates, and basal resources (e.g. algae).
3. Effluent inputs generally impaired water quality near discharge points, mainly through increased water temperature, nutrients, and concentrations of trace organic contaminants, but also via decreased dissolved oxygen levels. The majority of ecological studies found that basal resources, aquatic invertebrates, and fish were negatively affected in a variety of ways (e.g. biodiversity losses, replacement of sensitive with tolerant species). However, several studies showed the importance of effluent in providing environmental flows to streams that had been dewatered by anthropogenic water withdrawals, especially in semi-arid and arid regions.
4. Knowledge gaps identified include the abiotic impacts of effluent, such as changes in channel morphology and hydrology (e.g. how nutrient-rich and warmer effluent affects infiltration rates or interactions with groundwater), the effects of effluent on plants and vertebrates (e.g. amphibians, birds), and the impact of effluent-induced perennialisation on naturally intermittent or ephemeral streams.
5. Although effluent-fed streams often exhibit signs of ecological impairment, there is great potential for these systems to serve as refuges of aquatic biodiversity and corridors of ecological connectivity when wastewater treatment standards are high, especially in semi-arid and arid regions where natural streams have been dewatered.

     

Broad‐scale patterns of invertebrate richness and community composition in temporary rivers: effects of flow intermittence

Temporary rivers are increasingly common freshwater ecosystems, but there have been no global syntheses of their community patterns. In this study, we examined the responses of aquatic invertebrate communities to flow intermittence in 14 rivers from multiple biogeographic regions covering a wide range of flow intermittence and spatial arrangements of perennial and temporary reaches. Hydrological data were used to describe flow intermittence (FI, the proportion of the year without surface water) gradients. Linear mixed‐effects models were used to examine the relationships between FI and community structure and composition. We also tested if communities at the most temporary sites were nested subsets of communities at the least temporary and perennial sites. Taxon richness decreased as FI increased and invertebrate communities became dominated by ubiquitous taxa. The number of resilient taxa (with high dispersal capacities) decreased with increased FI, whereas the number of resistant taxa (with adaptations to desiccation) was not related to FI. River‐specific and river‐averaged model comparisons indicated most FI‐community relationships did not differ statistically among rivers. Community nestedness along FI gradients was detected in most rivers and there was little or no influence of the spatial arrangement of perennial and temporary reaches. These results indicate that FI is a primary driver of aquatic communities in temporary rivers, regardless of the biogeographic species pool. Community responses are largely due to resilience rather than resistance mechanisms. However, contrary to our expectations, resilience was not strongly influenced by spatial fragmentation patterns, suggesting that colonist sources other than adjacent perennial reaches were important.     

A novel assembly pipeline and functional annotations for targeted sequencing: A case study on the globally threatened Margaritiferidae (Bivalvia: Unionida)

The proliferation of genomic sequencing approaches has significantly impacted the field of phylogenetics. Target capture approaches provide a cost-effective, fast and easily applied strategy for phylogenetic inference of non-model organisms. However, several existing target capture processing pipelines are incapable of incorporating whole genome sequencing (WGS). Here, we develop a new pipeline for capture and de novo assembly of the targeted regions using whole genome re-sequencing reads. This new pipeline captured targeted loci accurately, and given its unbiased nature, can be used with any target capture probe set. Moreover, due to its low computational demand, this new pipeline may be ideal for users with limited resources and when high-coverage sequencing outputs are required. We demonstrate the utility of our approach by incorporating WGS data into the first comprehensive phylogenomic reconstruction of the freshwater mussel family Margaritiferidae. We also provide a catalogue of well-curated functional annotations of these previously uncharacterized freshwater mussel-specific target regions, representing a complementary tool for scrutinizing phylogenetic inferences while expanding future applications of the probe set.