DNA marker analysis of loci conferring resistance to peanut root-knot nematode in soybean

 Peanut root-knot nematode [Meloidogyne arenaria (Neal) Chitwood] (Ma) is a serious pathogen of soybean, Glycine max L. Merrill, in the southern USA. Breeding for root-knot nematode resistance is an important objective in many plant breeding programs. The inheritance of soybean resistance to Ma is quantitative and has a moderate-to-high variance-component heritability on a family mean basis. The objectives of the present study were to use restriction fragment length polymorphism (RFLP) markers to identify quantitative trait loci (QTLs) conferring resistance to Ma and to determine the genomic location and the relative contribution to resistance of each QTL. An F₂ population from a cross between PI200538 (Ma resistant) and ‘CNS’ (Ma susceptible) was mapped with 130 RFLPs. The 130 markers converged on 20 linkage groups spanning a total of 1766 cM. One hundred and five F_2:3 families were grown in the greenhouse and inoculated with Ma Race 2. Two QTLs conferring resistance to Ma were identified and PI200538 contributed the alleles for resistance at both QTLs. One QTL was mapped at 0-cM recombination with marker B212V-1 on linkage group-F (LG-F) of the USDA/ARS-Iowa State University RFLP map, and accounted for 32% of the variation in gall number. Another QTL was mapped in the interval from B212D-2 to A111H-2 on LG-E, and accounted for 16% of the variation in gall number. Gene action for the QTL located on LG-F was additive to partially dominant, whereas the gene action for the QTL on LG-E was dominant with respect to resistance. The two QTLs, when fixed on the framework map, accounted for 51% of the variation in gall number in a two-QTL model. The two QTLs for Ma resistance were found in duplicated regions of the soybean genome, and the major QTL for Ma resistance on LG-F is positioned within a cluster of eight diverse disease-resistance loci. Received: 10 June 1996 / Accepted: 18 April 1997     

Effects of Environments,Meloidogyne incognita Inoculum Levels,and Glycine max Genotype on Root-knot Nematode-Soybean Interactions in Field Microplots

Five soybean cultivars (Braxton, Gordon, Jeff, Bragg, and Wright) resistant to Meloidogyne incognita (Mi) and three susceptible cultivars (Coker 156, GaSoy 17, and Coker 237) were grown at two locations for four seasons in microplots with increasing initial soil population densities (Pi) of Mi. The resistant cultivars and Coker 156 yielded better than GaSoy 17 and Coker 237 at all Pi. Yield response was dependent on environmental conditions and at one location was stimulated on Braxton, Gordon, Jeff, and Bragg by low Pi. Although Mi reproduced well on all cultivars, the pattern of reproduction differed. Population densities of Mi leveled off after 90 days on GaSoy 17 and Coker 237 but were still increasing after 120 days on the resistant cultivars; population densities were lower on resistant than on the susceptible cultivars. The population density of Mi on Coker 156 after 120 days was intermediate between those on the other susceptible and on the resistant cultivars. Mi population densities followed the same pattern under varying environmental conditions.     

Physiological comparisons of two soybean cultivars differing in canopy photosynthesis. II. Variation in specific leaf weight,nitrogen, and protein components

Cultivar differences in canopy apparent photosynthesis (CAP) have been observed in soybean (Glycine max (L.) Merr.) but little is known about the physiological mechanisms which are responsible for such differences. This study was initiated to determine if variation in ribulose 1,5-bisphosphate carboxylase (RuBPCase) and soluble protein exists among cultivars which differ in CAP during reproductive growth. In addition, the relationship between specific leaf weight (SLW) and leaf protein was examined. Two Maturity Group VI cultivars, Tracy (high CAP) and Davis (low CAP), were grown in the field during 1979, 1980, and 1981 and in a greenhouse experiment. Leaves located at two canopy positions (topmost, fully expanded leaf and eighth node from the top) in 1979 and three canopy positions (those mentioned, plus the fourth node from the top) in 1980 and 1981 were sampled. Leaves at the two upper canopy positions exhibited greater SLW, RuBPCase m^–2, and soluble protein m^–2 than found at the eighth node down. Photosynthetic capacity of leaves at inner canopy regions was therefore affected by both light penetration into the canopy and leaf protein status. Over the three year period, the SLW was 23 percent and the soluble protein m^–2 leaf 21 percent greater in Tracy than in Davis. Although the trend in RuBPCase m^–2 leaf was not significant, it was consistently greater in Tracy in the field and greenhouse. No cultivar differences were observed when the proteins were expressed on a unit of leaf dry weight. The quantity of RuBPCase per unit leaf area was positively correlated with SLW with significant partial correlation coefficients of 0.62, 0.67, 0.35, and 0.82 for 1979, 1980, 1981, and the greenhouse study, respectively. Since these cultivars have similar leaf area indices during September, the greater SLW of Tracy is translated into more photosynthetic proteins per unit ground area and higher CAP rate.Abbreviations AP Leaf Apparent Photosynthesis - CAP Canopy Apparent Photosynthesis - DAP Days After Planting - DTT Dithothreitol - HEPES N-2-hydroethylpiperazine N-2 ethanesulfonic acid - LAI Leaf Area Index - LSD Least Significant Difference - PPFD Photosynthetic Photon Flux Density - PVP-40 Polyvinylpolypyrroledone (molecular weight, 4000) - RuBPCase Ribulose 1,5-bisphosphate Carboxylase - SLW Specific Leaf Weight     

Interactions Between Meloidogyne incognita and Pratylenchus brachyurus on Soybean

Interactions among Meloidogyne incognita, Pratylenchus brachyurus, and soybean genotype on plant growth and nematode reproduction were studied in a greenhouse. Coker 317 (susceptible to both nematodes) and Gordon (resistant to M. incognita, susceptible to P. brachyurus) were inoculated with increasing initial population densities (Pi) of both nematodes individually and combined. M. incognita and P. brachyurus individually usually suppressed shoot growth of both cultivars, but only root growth on Coker 317 was influenced by a M. incognita × P. brachyurus interaction. Reproduction of both nematodes, although dependent on Pi, was mutually suppressed on Coker 317. P. brachyurus reproduced better on Gordon than on Coker 317 but did not affect resistance to M. incognita. Root systems of Coker 317 were split and inoculated with M. incognita or P. brachyurus or both to determine the nature of the interaction. M. incognita suppressed reproduction of P. brachyurus either when coinhabiting a half-root system or infecting opposing half-root systems; however, P. brachyurus affected M. incognita only if both nematodes infected the same half-root system.     

SNP assay to detect the ‘Hyuuga’ red-brown lesion resistance gene for Asian soybean rust

Asian soybean rust (ASR), caused by Phakopsora pachyrhizi Syd., has the potential to become a serious threat to soybean, Glycine max L. Merr., production in the USA. A novel rust resistance gene, Rpp?(Hyuuga), from the Japanese soybean cultivar Hyuuga has been identified and mapped to soybean chromosome 6 (Gm06). Our objectives were to fine-map the Rpp?(Hyuuga) gene and develop a high-throughput single nucleotide polymorphism (SNP) assay to detect this ASR resistance gene. The integration of recombination events from two different soybean populations and the ASR reaction data indicates that the Rpp?(Hyuuga) locus is located in a region of approximately 371 kb between STS70887 and STS70923 on chromosome Gm06. A set of 32 ancestral genotypes which is predicted to contain 95% of the alleles present in current elite North American breeding populations and the sources of the previously reported ASR resistance genes (Rpp1, Rpp2, Rpp3, Rpp4, Rpp5, and rpp5) were genotyped with five SNP markers. We developed a SimpleProbe assay based on melting curve analysis for SNP06-44058 which is tighly linked to the Rpp?(Hyuuga) gene. This SNP assay can differentiate plants/lines that are homozygous/homogeneous or heterozygous/heterogeneous for the resistant and susceptible alleles at the Rpp?(Hyuuga) locus.     

Effects of Heterodera glycines and Meloidogyne incognita on Early Growth of Soybean

Greenhouse and field microplot studies were conducted to compare soybean shoot and root growth responses to root penetration by Heterodera glycines (Hg) and Meloidogyne incognita (Mi) individually and in combination. Soybean cultivars Centennial (resistant to Hg and Mi), Braxton (resistant to Mi, susceptible to Hg), and Coker 237 (susceptible to Hg and Mi) were selected for study. In the greenhouse, pot size and number of plants per pot had no effect on Hg or Mi penetration of Coker 237 roots; root weight was higher in the presence of either nematode species compared with the noninoculated controls. In greenhouse studies using a sand or soil medium, and in field microplot studies, each cultivar was grown with increasing initial population densities (Pi) of Hg or Mi. Interactions between Hg and Mi did not affect early plant growth or number of nematodes penetrating roots. Root penetration was the only response related to Pi. Mi penetration was higher in sand than in soil, and higher in the greenhouse than in the field, whereas Hg penetration was similar under all conditions. At 14 days after planting, more second-stage juveniles were present in roots of susceptible than in roots of resistant plants. Roots continued to lengthen in the greenhouse in the presence of either Mi or Hg regardless of host genotype, but only in the presence of Mi in microplots; otherwise, responses in field and greenhouse studies were similar and differed only in magnitude and variability.     

Characterization of the fan1 locus in soybean line A5 and development of molecular assays for high-throughput genotyping of FAD3 genes

Soybean is one of the most important oil crops worldwide, and reducing the linolenic acid content of soybean oil will provide increased stability of the oil to consumers and limit the amount of trans fat in processed foods. The linolenic content in soybean seed is controlled by three fatty acid desaturase (FAD) three enzymes, FAD3A, B, and C. The soybean lines with 1 % linolenic acid content which are widely used in breeding for reduced linolenic acid in the USA have mutations in each of the three FAD genes derived from lines A5 (deletion of FAD3A), A26, and A23 (missense mutations in FAD3B and C, respectively). Although soybean line A5 has been released for 30 years, the extent and definition of the deletion of the FAD3A gene has not been characterized, which has prevented researchers from designing robust molecular markers for effective marker-assisted selection (MAS). Using a PCR-based genomic strategy, we have identified a 6.4-kbp deletion of the FAD3A gene in A5 and developed a TaqMan detection assay by targeting the deletion junction in A5, which could be used to distinguish the homozygotes and heterozygotes of the gene. In addition, based on mutant single nucleotide polymorphisms in FAD3B and FAD3C identified in A26 and A23, respectively, we have also developed TaqMan assays for high-throughput MAS. The TaqMan assays have proven to be a very effective platform for detecting the mutant FAD3 alleles and thus will greatly facilitate high-throughput MAS for development of soybean lines with reduced linolenic acid content.