Stressful life events and depression among adolescent twin pairs

Using the twin pairs sample from the National Longitudinal Study ofAdolescent Health, we estimate bivariate Cholesky models for the influence of stressful life events (SLEs) on depressive symptoms. We show that depressive symptoms (h2Depression = .28) and dependent SLEs (events influenced by an individual's behavior) are both moderately heritable (h2SLE Dependent = .43). We find no evidence for the heritability of independent SLEs. Results from the bivariate Cholesky model suggest that roughly one-half of the correlation between depression and dependent SLEs is due to common genetic factors. Our findings suggest that attempts to characterize the causal effect of SLEs on mental health should limit their list of SLEs to those that are outside of the control of the individual.     

The value of MUTYH testing in patients with early onset microsatellite stable colorectal cancer referred for hereditary nonpolyposis colon cancer syndrome testing

MUTYH adenomatous polyposis (MAP) can mimic both the familial adenomatous polyposis (FAP) and hereditary nonpolyposis colon cancer (HNPCC) phenotypes. As a result of MAP's phenotypic overlap with FAP, some DNA diagnostic laboratories perform MUTYH testing in conjunction with APC testing in patients with suspected FAP or attenuated FAP (AFAP). In addition to testing FAP/AFAP samples for MUTYH mutations, we were interested whether there would also be value in testing samples referred for HNPCC testing. To determine this, we tested a consecutive series of 229 samples referred for HNPCC testing for the two most common MUTYH mutations in the Caucasian population. To enrich our study population with MAP cases, we only included samples from patients with early onset colorectal cancer (CRC diagnosed <50 years old) in whom HNPCC had been excluded by microsatellite instability testing (microsatellite stable or low microsatellite instability). Four biallelic (2%) and six monoallelic (3%) MUTYH mutation carriers were identified. No clinical factors predicted MUTYH mutation status. Specifically, a family history of vertical transmission of CRC or having few polyps (<15) did not rule out the possibility of biallelic MUTYH mutations. Thus, MUTYH mutation testing may be a reasonable cascade test in early onset CRC found to have proficient DNA mismatch repair, regardless of pattern of family history or number of polyps.     

A mesocosm study of the effect of restoration on methane (CH4) emissions from blanket peat

In a mesocosm study, we investigated the effect of different restoration methods on methane (CH₄) emissions from, and the global warming potential (GWP) of, blanket peat. The controlled laboratory study involved two distinct components: Experiment 1 focused on greenhouse gas exchanges from blocked drains (grips) and evaluated the effects of restoration method, water-level dynamics and climate on CH₄ emissions and GWP. Experiment 2 assessed the role of plant functional type (PFT) on CH₄ emissions from restored peat outside of the grip. A nine month meteorological simulation (April–December) was completed, testing five hypotheses across the two experiments. We found that the method of grip blocking/damming does make a difference with respect to CH₄ emissions and GWP. Of the methods considered, damming with no infill between the dams is preferred to either of the methods involving infilling (heather bale and re-profiling). GWP of all within-grip restoration outcomes was positive (i.e., indicating a net warming effect), and was not influenced by climate or water-level regime. PFT influences CH₄ emissions but not GWP in restored blanket bog. When considering radiative forcing, this finding suggests that it does not matter which PFT dominates a restored area. It is noted that the laboratory findings are, in some senses, preliminary because the experiments consider only a relatively short period immediately after restoration.     

Effects of lipid environment on the conformational changes of an ABC importer

In order to shuttle substrates across the lipid bilayer, membrane proteins undergo a series of conformation changes that are influenced by protein structure, ligands, and the lipid environment. To test the effect of lipid on conformation change of the ABC transporter MolBC, EPR studies were conducted in lipids and detergents of variable composition. In both a detergent and lipid environment, MolBC underwent the same general conformation changes as detected by site-directed EPR spectroscopy. However, differences in activity and the details of the EPR analysis indicate conformational rigidity that is dependent on the lipid environment. From these observations, we conclude that native-like lipid mixtures provide the transporter with greater activity and conformational flexibility as well as technical advantages such as reconstitution efficiency and protein stability.     

Retrospective Study of Campylobacter Infection in a Zoological Collection

Little is known about the epidemiology of Campylobacter spp. in wild animal populations. However, zoological collections can provide valuable insights. Using records from the Zoological Society of London Whipsnade Zoo compiled between 1990 and 2003, the roles of a range of biotic and abiotic factors associated with the occurrence of campylobacteriosis were investigated. The occurrence of campylobacteriosis varied widely across host taxonomic orders. Furthermore, in mammals, a combination of changes in both rainfall and temperature in the week preceding the onset of gastroenteritis were associated with isolation of Campylobacter from feces. In birds, there was a weak negative correlation between mean weekly rainfall and isolation of Campylobacter from feces. Importantly, in birds we found that the mean weekly rainfall 3 to 4 weeks before symptoms of gastroenteritis appeared was the best predictor of Campylobacter infection. Campylobacter-related gastroenteritis cases with mixed concurrent infections were positively associated with the presence of parasites (helminths and protozoans) in mammals, while in birds Campylobacter was associated with other concurrent bacterial infections rather than with the presence of helminths and protozoans. This study suggests that climatic elements are important factors associated with Campylobacter-related gastroenteritis. Further investigations are required to improve our understanding of Campylobacter epidemiology in captive wild animal populations.     

Model selection and logarithmic transformation in allometric analysis

The standard approach to most allometric research is to gather data on a biological function and a measure of body size, convert the data to logarithms, display the new values in a bivariate plot, and then fit a straight line to the transformations by the method of least squares. The slope of the fitted line provides an estimate for the allometric (or scaling) exponent, which often is interpreted in the context of underlying principles of structural and functional design. However, interpretations of this sort are based on the implicit assumption that the original data conform with a power function having an intercept of 0 on a plot with arithmetic coordinates. Whenever this assumption is not satisfied, the resulting estimate for the allometric exponent may be seriously biased and misleading. The problem of identifying an appropriate function is compounded by the logarithmic transformations, which alter the relationship between the original variables and frequently conceal the presence of outliers having an undue influence on properties of the fitted equation, including the estimate for the allometric exponent. Much of the current controversy in allometric research probably can be traced to substantive biases introduced by investigators who followed standard practice. We illustrate such biases with examples taken from the literature and outline a general methodology by which the biases can be minimized in future research.     

Autoantibodies directed to novel components of the PM/Scl complex, the human exosome

The autoantigenic polymyositis/scleroderma (PM/Scl) complex was recently shown to be the human homologue of the yeast exosome, which is an RNA-processing complex. Our aim was to assess whether, in addition to targeting the known autoantigens PM/Scl-100 and PM/Scl-75, autoantibodies also target recently identified components of the PM/Scl complex. The prevalence of autoantibodies directed to six novel human exosome components (hRrp4p, hRrp40p, hRrp41p, hRrp42p, hRrp46p, hCsl4p) was determined in sera from patients with idiopathic inflammatory myopathy (n = 48), scleroderma (n = 11), or the PM/Scl overlap syndrome (n = 10). The sera were analyzed by enzyme-linked immunosorbent assays and western blotting using the affinity-purified recombinant proteins. Our results show that each human exosome component is recognized by autoantibodies. The hRrp4p and hRrp42p components were most frequently targeted. The presence of autoantibodies directed to the novel components of the human exosome was correlated with the presence of the anti-PM/Scl-100 autoantibody in the sera of patients with idiopathic inflammatory myopathy (IIM), as was previously found for the anti-PM/Scl-75 autoantibody. Other clear associations between autoantibody activities were not found. These results further support the conception that the autoimmune response may initially be directed to PM/Scl-100, whereas intermolecular epitope spreading may have caused the autoantibody response directed to the associated components.     

Convergent evolution of cysteine residues in sperm protamines of one genus of marsupials, the Planigales

A characteristic feature of the sperm P1 protamines of eutherian mammals is the constant presence of six to nine cysteine residues per molecule. During spermiogenesis these residues become oxidized to form a three-dimensional network of disulfide bridges between, and within, protamine molecules in the sperm chromatin. This covalent cross linking strongly stabilizes eutherian sperm nuclei. In contrast, protamines sequenced from teleost fish, birds, monotremes, and marsupials all lack cysteine residues and their sperm nuclei, without the stabilizing cross links, are easily decondensed in vitro. We have now found that one genus of tiny, shrewlike dasyurid marsupials, the Planigales, possess P1 protamines containing five to six cysteine residues. These residues appear to have evolved since the divergence of Planigales from other members of the family Dasyuridae, such as the marsupial mouse, Sminthopsis crassicaudata. We believe this constitutes a case of convergent evolution in a subfamily of dasyurid marsupials toward the cysteine-rich eutherian form of sperm protamine P1.      

Formation of chlorophyll B, and the fluorescence properties and photochemical activities of isolated plastids from greening pea seedlings

Chlorophyll b was first detectable after 10 minutes of illumination of etiolated pea seedlings (Pisum sativum L. var Greenfeast) with continuous white light. The chlorophyll a/b ratio decreased from 300 at 10 minutes to 15 after 1 hour. There was little change in the chlorophyll a/b ratio between 1 and 2 hours, and it declined to 3 between 2 and 5 hours of illumination. In red light, the time courses of total chlorophyll synthesis and chlorophyll a/b ratio were similar to those in white light for the first 5 hours of illumination. But with increasing time of illumination with red light, there was an increase in the chlorophyll a/b ratio to 7 after 30 hours. Illumination with white light of very low intensity also gave high chlorophyll a/b ratios. Seedlings which had been illuminated for varying periods and then returned to darkness always showed an increase in chlorophyll a/b ratio during the dark period. It is concluded that the synthesis of chlorophyll b is controlled by light.