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101.
A physical and mathematical model for wine fermentation kinetics was adapted to include the influence of temperature, perhaps the most critical factor influencing fermentation kinetics. The model was based on flask-scale white wine fermentations at different temperatures (11 to 35 degrees C) and different initial concentrations of sugar (265 to 300 g/liter) and nitrogen (70 to 350 mg N/liter). The results show that fermentation temperature and inadequate levels of nitrogen will cause stuck or sluggish fermentations. Model parameters representing cell growth rate, sugar utilization rate, and the inactivation rate of cells in the presence of ethanol are highly temperature dependent. All other variables (yield coefficient of cell mass to utilized nitrogen, yield coefficient of ethanol to utilized sugar, Monod constant for nitrogen-limited growth, and Michaelis-Menten-type constant for sugar transport) were determined to vary insignificantly with temperature. The resulting mathematical model accurately predicts the observed wine fermentation kinetics with respect to different temperatures and different initial conditions, including data from fermentations not used for model development. This is the first wine fermentation model that accurately predicts a transition from sluggish to normal to stuck fermentations as temperature increases from 11 to 35 degrees C. Furthermore, this comprehensive model provides insight into combined effects of time, temperature, and ethanol concentration on yeast (Saccharomyces cerevisiae) activity and physiology. 相似文献
102.
Chloroplasts are bounded by a pair of outer membranes, the envelope, that is the only permanent membrane structure of the
different types of plastids. Chloroplasts have had a long and complex evolutionary past and integration of the envelope membranes
in cellular functions is the result of this evolution. Plastid envelope membranes contain a wide diversity of lipids and terpenoid
compounds serving numerous biochemical functions and the flexibility of their biosynthetic pathways allow plants to adapt
to fluctuating environmental conditions (for instance phosphate deprivation). A large body of knowledge has been generated
by proteomic studies targeted to envelope membranes, thus revealing an unexpected complexity of this membrane system. For
instance, new transport systems for metabolites and ions have been identified in envelope membranes and new routes for the
import of chloroplast-specific proteins have been identified. The picture emerging from our present understanding of plastid
envelope membranes is that of a key player in plastid biogenesis and the co-ordinated gene expression of plastid-specific
protein (owing to chlorophyll precursors), of a major hub for integration of metabolic and ionic networks in cell metabolism,
of a flexible system that can divide, produce dynamic extensions and interact with other cell constituents. Envelope membranes
are indeed one of the most complex and dynamic system within a plant cell. In this review, we present an overview of envelope
constituents together with recent insights into the major functions fulfilled by envelope membranes and their dynamics within
plant cells.
Special Issue of Photosynthesis Research in honor of Andrew A. Benson. 相似文献
103.
Douglas P Cui X Block WD Yu Y Gupta S Ding Q Ye R Morrice N Lees-Miller SP Meek K 《Molecular and cellular biology》2007,27(5):1581-1591
The protein kinase activity of the DNA-dependent protein kinase (DNA-PK) is required for the repair of DNA double-strand breaks (DSBs) via the process of nonhomologous end joining (NHEJ). However, to date, the only target shown to be functionally relevant for the enzymatic role of DNA-PK in NHEJ is the large catalytic subunit DNA-PKcs itself. In vitro, autophosphorylation of DNA-PKcs induces kinase inactivation and dissociation of DNA-PKcs from the DNA end-binding component Ku70/Ku80. Phosphorylation within the two previously identified clusters of phosphorylation sites does not mediate inactivation of the assembled complex and only partially regulates kinase disassembly, suggesting that additional autophosphorylation sites may be important for DNA-PK function. Here, we show that DNA-PKcs contains a highly conserved amino acid (threonine 3950) in a region similar to the activation loop or t-loop found in the protein kinase domain of members of the typical eukaryotic protein kinase family. We demonstrate that threonine 3950 is an in vitro autophosphorylation site and that this residue, as well as other previously identified sites in the ABCDE cluster, is phosphorylated in vivo in irradiated cells. Moreover, we show that mutation of threonine 3950 to the phosphomimic aspartic acid abrogates V(D)J recombination and leads to radiation sensitivity. Together, these data suggest that threonine 3950 is a functionally important, DNA damage-inducible phosphorylation site and that phosphorylation of this site regulates the activity of DNA-PKcs. 相似文献
104.
Michael J. W. Stokesbury Ronan Cosgrove Andre Boustany Daragh Browne Steven L. H. Teo Ronald K. O’Dor Barbara A. Block 《Hydrobiologia》2007,582(1):91-97
Pop-up satellite archival tags were attached to six Atlantic bluefin tuna (Thunnus thynnus) off the west coast of Ireland in autumn 2003 and 2004. The satellite tags measured pressure, ambient temperature and light
for the term of deployment. Radio pop-up satellite endpoint positions, light and sea surface temperature estimations of geolocation
indicate that two fish tagged minutes apart off the coast of County Donegal, migrated to the eastern and western Atlantic
Ocean over the following 8 months. The two fish were 5218 km apart at the termination of the experiment. After tagging in
September and popping up the following March and April, one fish had traveled to the western Atlantic while the other was
located in the waters off the southwest coast of Portugal. A third fish tagged off the coast of County Donegal in October
2004 moved into the Mediterranean Sea and was caught by a fishing vessel southeast of Malta on 11 June 2005. The results link
bluefin tuna feeding on European foraging grounds with known eastern breeding regions and western Atlantic waters. 相似文献
105.
Seasonal encoding by the circadian pacemaker of the SCN 总被引:1,自引:0,他引:1
VanderLeest HT Houben T Michel S Deboer T Albus H Vansteensel MJ Block GD Meijer JH 《Current biology : CB》2007,17(5):468-473
The circadian pacemaker of the suprachiasmatic nucleus (SCN) functions as a seasonal clock through its ability to encode day length [1-6]. To investigate the mechanism by which SCN neurons code for day length, we housed mice under long (LD 16:8) and short (LD 8:16) photoperiods. Electrophysiological recordings of multiunit activity (MUA) in the SCN of freely moving mice revealed broad activity profiles in long days and compressed activity profiles in short days. The patterns remained consistent after release of the mice in constant darkness. Recordings of MUA in acutely prepared hypothalamic slices showed similar differences between the SCN electrical activity patterns in vitro in long and short days. In vitro recordings of neuronal subpopulations revealed that the width of the MUA activity profiles was determined by the distribution of phases of contributing units within the SCN. The subpopulation patterns displayed a significantly broader distribution in long days than in short days. Long-term recordings of single-unit activity revealed short durations of elevated activity in both short and long days (3.48 and 3.85 hr, respectively). The data indicate that coding for day length involves plasticity within SCN neuronal networks in which the phase distribution of oscillating neurons carries information on the photoperiod's duration. 相似文献
106.
107.
108.
Mounting evidence indicates that microglial activation contributes to neuronal damage in neurodegenerative diseases. Recent studies show that in response to certain environmental toxins and endogenous proteins, microglia can enter an overactivated state and release reactive oxygen species (ROS) that cause neurotoxicity. Pattern recognition receptors expressed on the microglial surface seem to be one of the primary, common pathways by which diverse toxin signals are transduced into ROS production. Overactivated microglia can be detected using imaging techniques and therefore this knowledge offers an opportunity not only for early diagnosis but, importantly, for the development of targeted anti-inflammatory therapies that might slow or halt the progression of neurodegenerative disease. 相似文献
109.
110.
Hilde Nelissen Dominique Eeckhout Kirin Demuynck Geert Persiau Alan Walton Michiel van Bel Marieke Vervoort Jasper Candaele Jolien De Block Stijn Aesaert Mieke Van Lijsebettens Sofie Goormachtig Klaas Vandepoele Jelle Van Leene Michael Muszynski Kris Gevaert Dirk Inzé Geert De Jaeger 《The Plant cell》2015,27(6):1605-1619
Most molecular processes during plant development occur with a particular spatio-temporal specificity. Thus far, it has remained technically challenging to capture dynamic protein-protein interactions within a growing organ, where the interplay between cell division and cell expansion is instrumental. Here, we combined high-resolution sampling of the growing maize (Zea mays) leaf with tandem affinity purification followed by mass spectrometry. Our results indicate that the growth-regulating SWI/SNF chromatin remodeling complex associated with ANGUSTIFOLIA3 (AN3) was conserved within growing organs and between dicots and monocots. Moreover, we were able to demonstrate the dynamics of the AN3-interacting proteins within the growing leaf, since copurified GROWTH-REGULATING FACTORs (GRFs) varied throughout the growing leaf. Indeed, GRF1, GRF6, GRF7, GRF12, GRF15, and GRF17 were significantly enriched in the division zone of the growing leaf, while GRF4 and GRF10 levels were comparable between division zone and expansion zone in the growing leaf. These dynamics were also reflected at the mRNA and protein levels, indicating tight developmental regulation of the AN3-associated chromatin remodeling complex. In addition, the phenotypes of maize plants overexpressing miRNA396a-resistant GRF1 support a model proposing that distinct associations of the chromatin remodeling complex with specific GRFs tightly regulate the transition between cell division and cell expansion. Together, our data demonstrate that advancing from static to dynamic protein-protein interaction analysis in a growing organ adds insights in how developmental switches are regulated. 相似文献