Native immunoblotting of blue native gels to identify conformation‐specific antibodies

A large repertoire of immunological methods permits monitoring the interaction of antibodies with their specific antigen. However, recognition of a protein by a conformation‐specific antibody represents a challenge because native conditions must be kept throughout the assay. Native immunoblotting of blue native gels conserves the native state by using Tween 20 instead of methanol for the obligatory destaining of the blot membrane. We validate the new technique with a set of monoclonal antibodies against respiratory NADH:ubiquinone oxidoreductase.     

Intercontinental genetic structure in the amphi‐Pacific peatmoss Sphagnum miyabeanum (Bryophyta: Sphagnaceae)

Unlike seed plants where global biogeographical patterns typically involve interspecific phylogenetic history, spore‐producing bryophyte species often have intercontinental distributions that are best understood from a population genetic perspective. We sought to understand how reproductive processes, especially dispersal, have contributed to the intercontinental ‘Pacific Rim’ distribution of Sphagnum miyabeanum. In total, 295 gametophyte plants from western North America (California, Oregon, British Columbia, Alaska), Russia, Japan, and China were genotyped at 12 microsatellite loci. Nucleotide sequences were obtained for seven anonymous nuclear loci plus two plastid regions from 21 plants of S. miyabeanum and two outgroup species. We detected weak but significant genetic differentiation among plants from China, Japan, Alaska, British Columbia, and the western USA. Alaskan plants are genetically most similar to Asian plants, and British Columbian plants are most similar to those in the western USA. There is detectable migration between regions, with especially high levels between Alaska and Asia (China and Japan). Migration appears to be recent and/or ongoing, and more or less equivalent in both directions. There is weak (but significant) isolation‐by‐distance within geographical regions, and the slope of the regression of genetic on geographical distance differs for Asian versus North American plants. A distinctive Vancouver Island morphotype is very weakly differentiated, and does not appear to be reproductively isolated from plants of the normal morphotype. The intercontinental geographical range of S. miyabeanum reflects recent and probably ongoing migration, facilitated by the production of tiny spores capable of effective long distance dispersal. The results of the present study are consistent with Pleistocene survival of S. miyabeanum in unglaciated Beringia, although we cannot eliminate the possibility that the species recolonized Alaska from Asia more recently. © 2013 The Linnean Society of London, Biological Journal of the Linnean Society, 2014, 111 , 17–37.     

Disjunct Occurrences of Plant Species in the Refugial Mires of Bulgaria

Many mire vascular plant and bryophyte species have disjunct occurrences in Bulgaria despite that most of south-eastern Europe is not suitable for the occurrence of permanently waterlogged and nutrient-limited wetlands due to the current and glacial dry climate conditions as well as prevailing limestone bedrock. Unfortunately, such important distributional data are scattered throughout numerous papers and reports, and are not adequately provided even by national checklists and floras. No attempt to summarize them has been done yet. Therefore, the main aim of this paper is to review and enlarge such data, and to use the resulting data set to address the question whether the disjunctly occurring rare species are concentrated in certain mire complexes or even in particular vegetation plots and if they do characterize such localities. Our current research shows that the phenomenon of isolated occurrences of mire plants in Bulgaria is even more widespread than previously thought. Seventeen species were found as new for Bulgaria with their distribution range limits there, and distributional data of many other species, including some previously considered extinct, were enlarged. Fifty-four mire species were found at only three or fewer sites. Our analyses showed a conspicuous concentration of rare, disjunctly occurring species at a few sites, which are, however, largely unexplored in terms of palaeoecology or ecology, not legally protected and currently threatened by human activities. The distributions of target rare species within Bulgarian mires were significantly nested, which means that more species-poor assemblages were subsets of richer ones. Nestedness was significantly related to the estimated area of mire complex, but not all high-diversity mires were large. Disjunctly occurring rare species were more concentrated in particular vegetation plots at lower altitudes and in mineral-rich fens. Fragmentary data about the ecology and history of Bulgarian refugial mires suggest that these mires harbour specific ecotypes and genotypes, contain specifically distributed biogeographic groups of species, provide an opportunity to test biogeographical hypotheses and shelter crucial information about the history of European mires. Thus, these sites have a potential to become a source of very important information for biogeographical, palaeoecological, and phylogeographical analyses.     

The life-extending gene Indy encodes an exchanger for Krebs-cycle intermediates

A longevity gene called Indy (for 'I'm not dead yet'), with similarity to mammalian genes encoding sodium-dicarboxylate cotransporters, was identified in Drosophila melanogaster. Functional studies in Xenopus oocytes showed that INDY mediates the flux of dicarboxylates and citrate across the plasma membrane, but the specific transport mechanism mediated by INDY was not identified. To test whether INDY functions as an anion exchanger, we examined whether substrate efflux is stimulated by transportable substrates added to the external medium. Efflux of [14C]citrate from INDY-expressing oocytes was greatly accelerated by the addition of succinate to the external medium, indicating citrate-succinate exchange. The succinate-stimulated [14C]citrate efflux was sensitive to inhibition by DIDS (4,4'-di-isothiocyano-2,2'-disulphonic stilbene), as demonstrated previously for INDY-mediated succinate uptake. INDY-mediated efflux of [14C]citrate was also stimulated by external citrate and oxaloacetate, indicating citrate-citrate and citrate-oxaloacetate exchange. Similarly, efflux of [14C]succinate from INDY-expressing oocytes was stimulated by external citrate, alpha-oxoglutarate and fumarate, indicating succinate-citrate, succinate-alpha-oxoglutarate and succinate-fumarate exchange respectively. Conversely, when INDY-expressing Xenopus oocytes were loaded with succinate and citrate, [14C]succinate uptake was markedly stimulated, confirming succinate-succinate and succinate-citrate exchange. Exchange of internal anion for external citrate was markedly pH(o)-dependent, consistent with the concept that citrate is co-transported with a proton. Anion exchange was sodium-independent. We conclude that INDY functions as an exchanger of dicarboxylate and tricarboxylate Krebs-cycle intermediates. The effect of decreasing INDY activity, as in the long-lived Indy mutants, may be to alter energy metabolism in a manner that favours lifespan extension.     

Can juvenogens,biochemically targeted hormonogen compounds,assist in environmentally safe insect pest management?

Two different types of juvenogens, biochemically targeted hormonogen compounds were tested for their potency to act as insect pest management agents. In the performed biological screening, wax-like esteric juvenogens (3-10) proved to be convenient agents for controlling blowfly and termites, and displayed species selectivity: cis-N-{2-[4-(2-butanoyloxycyclohexyl)methyl]phenoxy}ethyl carbamate (3) was highly active on blowfly (Neobellieria bullata), while trans-N-{2-[4-(2-hexadecanoyloxycyclohexyl)methyl]-phenoxy}ethyl carbamate (6) showed high activity on termite (Prorhinotermes simplex). Glycosidic juvenogens, isomeric N-{2-{4-{[2-(beta-D-galactopyranosyloxy)cyclohexyl]methyl}phenoxy}ethyl carbamates (13 and 14), were proved to act as systemic agents, suitable for protecting plants against phytophagous insects (e.g. aphids). Due to the prolonged action of juvenogens, which is connected with the sequential liberating of the biologically active molecule of the insect juvenile hormone bioanalog from the juvenogen molecule by means of enzymic systems of target insects and/or their host plants, more insect individuals can be treated by juvenogens, which are species-targeted structures due to their different physicochemical properties. The results achieved with both types of juvenogens were promising, concerning their final effect on the tested insect species, and the compounds 3-6, 9 (cis-(9Z)-N-{2-[4-(2-(octadec-9-enoyl)oxycyclohexyl)methyl]phenoxy}ethyl carbamate), 13 and 14 proved to represent convenient insect pest management agents for potential practical applications against different insect pests.     

Characterization of the human SNM1A and SNM1B/Apollo DNA repair exonucleases

Human SNM1A and SNM1B/Apollo have both been implicated in the repair of DNA interstrand cross-links (ICLs) by cellular studies, and SNM1B is also required for telomere protection. Here, we describe studies on the biochemical characterization of the SNM1A and SNM1B proteins. The results reveal some fundamental differences in the mechanisms of the two proteins. Both SNM1A and SNM1B digest double-stranded and single-stranded DNA with a 5'-to-3' directionality in a reaction that is stimulated by divalent cations, and both nucleases are inhibited by the zinc chelator o-phenanthroline. We find that SNM1A has greater affinity for single-stranded DNA over double-stranded DNA that is not observed with SNM1B. Although both proteins demonstrate a low level of processivity on low molecular weight DNA oligonucleotide substrates, when presented with high molecular weight DNA, SNM1A alone is rendered much more active, being capable of digesting kilobase-long stretches of DNA. Both proteins can digest past ICLs induced by the non-distorting minor groove cross-linking agent SJG-136, albeit with SNM1A showing a greater capacity to achieve this. This is consistent with the proposal that SNM1A and SNM1B might exhibit some redundancy in ICL repair. Together, our work establishes differences in the substrate selectivities of SNM1A and SNM1B that are likely to be relevant to their in vivo roles and which might be exploited in the development of selective inhibitors.