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101.
Alexander W Wyatt Fan Mo Kendric Wang Brian McConeghy Sonal Brahmbhatt Lina Jong Devon M Mitchell Rebecca L Johnston Anne Haegert Estelle Li Janet Liew Jake Yeung Raunak Shrestha Anna V Lapuk Andrew McPherson Robert Shukin Robert H Bell Shawn Anderson Jennifer Bishop Antonio Hurtado-Coll Hong Xiao Arul M Chinnaiyan Rohit Mehra Dong Lin Yuzhuo Wang Ladan Fazli Martin E Gleave Stanislav V Volik Colin C Collins 《Genome biology》2014,15(8)
102.
William L. Galanter Michelle L. Bryson Suzanne Falck Rachel Rosenfield Marci Laragh Neeha Shrestha Gordon D. Schiff Bruce L. Lambert 《PloS one》2014,9(7)
Background
Confusion between similar drug names is a common cause of potentially harmful medication errors. Interventions to prevent these errors at the point of prescribing have had limited success. The purpose of this study is to measure whether indication alerts at the time of computerized physician order entry (CPOE) can intercept drug name confusion errors.Methods and Findings
A retrospective observational study of alerts provided to prescribers in a public, tertiary hospital and ambulatory practice with medication orders placed using CPOE. Consecutive patients seen from April 2006 through February 2012 were eligible if a clinician received an indication alert during ordering. A total of 54,499 unique patients were included. The computerized decision support system prompted prescribers to enter indications when certain medications were ordered without a coded indication in the electronic problem list. Alerts required prescribers either to ignore them by clicking OK, to place a problem in the problem list, or to cancel the order. Main outcome was the proportion of indication alerts resulting in the interception of drug name confusion errors. Error interception was determined using an algorithm to identify instances in which an alert triggered, the initial medication order was not completed, and the same prescriber ordered a similar-sounding medication on the same patient within 5 minutes. Similarity was defined using standard text similarity measures. Two clinicians performed chart review of all cases to determine whether the first, non-completed medication order had a documented or non-documented, plausible indication for use. If either reviewer found a plausible indication, the case was not considered an error. We analyzed 127,458 alerts and identified 176 intercepted drug name confusion errors, an interception rate of 0.14±.01%.Conclusions
Indication alerts intercepted 1.4 drug name confusion errors per 1000 alerts. Institutions with CPOE should consider using indication prompts to intercept drug name confusion errors. 相似文献103.
Shrestha Priyadarsini Jesper Hjortdal Akhee Sarker-Nag Henrik Sejersen John M. Asara Dimitrios Karamichos 《PloS one》2014,9(11)
Keratoconus (KC) is a bilateral degenerative disease of the cornea characterized by corneal bulging, stromal thinning, and scarring. The etiology of the disease is unknown. In this study, we identified a new biomarker for KC that is present in vivo and in vitro. In vivo, tear samples were collected from age-matched controls with no eye disease (n = 36) and KC diagnosed subjects (n = 17). Samples were processed for proteomics using LC-MS/MS. In vitro, cells were isolated from controls (Human Corneal Fibroblasts-HCF) and KC subjects (Human Keratoconus Cells-HKC) and stimulated with a Vitamin C (VitC) derivative for 4 weeks, and with one of the three transforming growth factor-beta (TGF-β) isoforms. Samples were analyzed using real-time PCR and Western Blots. By using proteomics analysis, the Gross cystic disease fluid protein-15 (GCDFP-15) or prolactin-inducible protein (PIP) was found to be the best independent biomarker able to discriminate between KC and controls. The intensity of GCDFP-15/PIP was significantly higher in healthy subjects compared to KC-diagnosed. Similar findings were seen in vitro, using a 3D culture model. All three TGF-β isoforms significantly down-regulated the expression of GCDFP-15/PIP. Zinc-alpha-2-glycoprotein (AZGP1), a protein that binds to PIP, was identified by proteomics and cell culture to be highly regulated. In this study by different complementary techniques we confirmed the potential role of GCDFP-15/PIP as a novel biomarker for KC disease. It is likely that exploring the GCDFP-15/PIP-AZGP1 interactions will help better understand the mechanism of KC disease. 相似文献
104.
Bindesh Shrestha Prabhakar Sripadi Brent R. Reschke Holly D. Henderson Matthew J. Powell Sally A. Moody Akos Vertes 《PloS one》2014,9(12)
Xenopus laevis eggs are used as a biological model system for studying fertilization and early embryonic development in vertebrates. Most methods used for their molecular analysis require elaborate sample preparation including separate protocols for the water soluble and lipid components. In this study, laser ablation electrospray ionization (LAESI), an ambient ionization technique, was used for direct mass spectrometric analysis of X. laevis eggs and early stage embryos up to five cleavage cycles. Single unfertilized and fertilized eggs, their animal and vegetal poles, and embryos through the 32-cell stage were analyzed. Fifty two small metabolite ions, including glutathione, GABA and amino acids, as well as numerous lipids including 14 fatty acids, 13 lysophosphatidylcholines, 36 phosphatidylcholines and 29 triacylglycerols were putatively identified. Additionally, some proteins, for example thymosin β4 (Xen), were also detected. On the subcellular level, the lipid profiles were found to differ between the animal and vegetal poles of the eggs. Radial profiling revealed profound compositional differences between the jelly coat vitelline/plasma membrane and egg cytoplasm. Changes in the metabolic profile of the egg following fertilization, e.g., the decline of polyamine content with the development of the embryo were observed using LAESI-MS. This approach enables the exploration of metabolic and lipid changes during the early stages of embryogenesis. 相似文献
105.
106.
Eneyi E. Kpokiri Elizabeth Chen Jingjing Li Sarah Payne Priyanka Shrestha Kaosar Afsana Uche Amazigo Phyllis Awor Jean-Francois de Lavison Saqif Khan Jana Mier-Alpao Alberto Ong Jr Shivani Subhedar Isabelle Wachmuth Luis Gabriel Cuervo Kala M. Mehta Beatrice Halpaap Joseph D. Tucker 《PLoS medicine》2021,18(9)
107.
Michael P. Gallagher Akritee Shrestha Jennifer M. Magee Duane R. Wesemann 《Journal of visualized experiments : JoVE》2014,(94)
B lymphocyte immunoglobulin heavy chain (IgH) class switch recombination (CSR) is a process wherein initially expressed IgM switches to other IgH isotypes, such as IgA, IgE and IgG. Measurement of IgH CSR in vitro is a key method for the study of a number of biologic processes ranging from DNA recombination and repair to aspects of molecular and cellular immunology. In vitro CSR assay involves the flow cytometric measurement surface Ig expression on activated B cells. While measurement of IgA and IgG subclasses is straightforward, measurement of IgE by this method is problematic due to soluble IgE binding to FcεRII/CD23 expressed on the surface of activated B cells. Here we describe a unique procedure for accurate measurement of IgE-producing mouse B cells that have undergone CSR in culture. The method is based on trypsin-mediated cleavage of IgE-CD23 complexes on cell surfaces, allowing for detection of IgE-producing B lineage cells by cytoplasmic staining. This procedure offers a convenient solution for flow cytometric analysis of CSR to IgE. 相似文献
108.
Land use impacts on physical properties of 28 years old reclaimed mine soils in Ohio 总被引:1,自引:0,他引:1
Reclamation enhances soil quality by improving physical and chemical properties, which helps in restoration of mine soils.
Evaluation of the effects of post-reclamation land uses on physical and chemical properties of mine soils helps to identify
suitable land uses for mining companies. The objectives of this study were to evaluate the effects of post-reclamation land
uses (e.g., forest, hay and pasture) on selected physical properties of soil in relation to undisturbed forest and agricultural
land use. Soil samples were collected from the 0- to 5-, 5- to 15- and 15- to 30-cm depths in order to determine particle
size distribution, bulk density, water-stable aggregates, mean-weight diameter and soil moisture retention. Cone index and
infiltration rate were determined at soil surface. After 28 years of reclamation, bulk density in the surface layer of all
land uses in the reclaimed mine soil (RMS) was similar to that of undisturbed forest (1.1 Mg m−3) but lower than that of agricultural soils (1.3 Mg m−3). However, soil bulk density at lower depths was not affected. The cone index was higher in the RMS-pasture (2.6 MPa) than
the RMS-forest (1.4 MPa) and RMS-hay (1.5 MPa) due to the trampling effect of grazing animals. The water-stable aggregates
(>2 mm), of 5–8 mm aggregates, were higher in RMS-forest by 24%, 90%, 66%, and under RMS-hay by 13%, 74%, 43% for the 0- to
5-, 5- to 15-, and 15- to 30-cm depths, respectively, than that under undisturbed forest. The mean-weight diameter (0- to
30-cm) of aggregates under RMS-forest and RMS-hay were higher than that under undisturbed forest by 41% and 27%, respectively.
The initial infiltration rates at 5 min in RMS under forest, hay and pasture were less by 20%, 53% and 85%, respectively,
than that under undisturbed forest (19.3 cm min−1). The reclamation of mine soils with forest and hay improved surface soil bulk density and cone index, and enhanced water
infiltration capacity and water-stable aggregates at the lower depths. Therefore, establishment of forest and hay should be
encouraged in the RMS. 相似文献
109.
110.
Protection against malaria morbidity: Near-fixation of the α-thalassemia gene in a Nepalese population 总被引:1,自引:0,他引:1
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G. Modiano G. Morpurgo L. Terrenato A. Novelletto A. Di Rienzo B. Colombo M. Purpura M. Mariani S. Santachiara-Benerecetti A. Brega K. A. Dixit S. L. Shrestha A. Lania W. Wanachiwanawin L. Luzzatto 《American journal of human genetics》1991,48(2):390-397
We have previously reported that the Tharu people of the Terai region in southern Nepal have an incidence of malaria about sevenfold lower than that of synpatric non-Tharu people. In order to find out whether this marked resistance against malaria has a genetic basis, we have now determined in these populations the prevalence of candidate protective genes and have performed in-vitro cultures of Plasmodium falciparum in both Tharu and non-Tharu red cells. We have found significant but relatively low and variable frequencies of beta-thal, beta S, G6PD (-), and Duffy (a-b-) in different parts of the Terai region. The average in-vitro rate of invasion and of parasite multiplication did not differ significantly in red cells from Tharus versus those from non-Tharu controls. By contrast, the frequency of alpha-thalassemia is uniformly high in Tharus, with the majority of them having the homozygous alpha-/alpha-genotype and an overall alpha-thal gene (alpha-) frequency of .8. We suggest that holoendemic malaria has caused preferential survival of subjects with alpha-thal and that this genetic factor has enabled the Tharus as a population to survive for centuries in a malaria-holoendemic area. From our data we estimate that the alpha-thal homozygous state decreases morbidity from malaria by about 10-fold. This is an example of selection evolution toward fixation of an otherwise abnormal gene. 相似文献