重组小麦静息巯基氧化酶的表达、酶学特性及其对面包品质的影响

为发展新型面粉改良酶制剂,利用大肠杆菌Escherichia coli原核表达了小麦静息巯基氧化酶(Wheat quiescin sulfhydryl oxidase,wQSOX)。将合成的wqsox基因构建至pMAL-c5x载体,并在大肠杆菌中进行表达,优化蛋白表达条件后对重组蛋白进行分离纯化及融合标签切除,获得的重组wQSOX蛋白用于酶学性质探究以及面包品质改良。结果表明,合成的截短wqsox基因包含1359 bp,编码453个氨基酸,理论蛋白分子量51 kDa;构建的pMAL-c5x-wqsox重组质粒在E.coli Rosetta gamiB(DE3)中可溶表达了重组蛋白MBP-wQSOX,其最佳表达条件为:诱导温度25℃,诱导剂IPTG浓度0.3 mmol/L,诱导时间6 h;利用Xa因子蛋白酶切除了MBP融合标签,亲和层析纯化得到了wQSOX;wQSOX可催化DTT、GSH和Cys氧化,并伴随着H2O2的生成,其中对DTT表现出最高的底物特异性;酶学性质研究发现,wQSOX最适反应温度和pH分别为50℃和10.0,在高温和碱性环境条件下表现出较好的稳定性;每克面粉中添加1.1 U wQSOX能够显著(P<0.05)提高26.4%的面包比容,降低20.5%的面包芯硬度和24.8%的咀嚼性,表现出了较好的改良面包加工品质能力。研究结果对丰富新型面粉改良酶制剂种类以及推动wQSOX在焙烤行业的应用奠定了理论基础。     

A Bayes factor approach with informative prior for rare genetic variant analysis from next generation sequencing data

The discovery of rare genetic variants through next generation sequencing is a very challenging issue in the field of human genetics. We propose a novel region‐based statistical approach based on a Bayes Factor (BF) to assess evidence of association between a set of rare variants (RVs) located on the same genomic region and a disease outcome in the context of case‐control design. Marginal likelihoods are computed under the null and alternative hypotheses assuming a binomial distribution for the RV count in the region and a beta or mixture of Dirac and beta prior distribution for the probability of RV. We derive the theoretical null distribution of the BF under our prior setting and show that a Bayesian control of the false Discovery Rate can be obtained for genome‐wide inference. Informative priors are introduced using prior evidence of association from a Kolmogorov‐Smirnov test statistic. We use our simulation program, sim1000G, to generate RV data similar to the 1000 genomes sequencing project. Our simulation studies showed that the new BF statistic outperforms standard methods (SKAT, SKAT‐O, Burden test) in case‐control studies with moderate sample sizes and is equivalent to them under large sample size scenarios. Our real data application to a lung cancer case‐control study found enrichment for RVs in known and novel cancer genes. It also suggests that using the BF with informative prior improves the overall gene discovery compared to the BF with noninformative prior.     

The Role of DNA Methylation Reprogramming During Sex Determination and Transition in Zebrafish

DNA methylation is a prevalent epigenetic modification in vertebrates, and it has been shown to be involved the regulation of gene expression and embryo development. However, it remains unclear how DNA methylation regulates sexual development, especially in species without sex chromosomes. To determine this, we utilized zebrafish to investigate DNA methylation reprogramming during juvenile germ cell development and adult female-to-male sex transition.We reveal that primordial germ cells(PGCs) undergo significant DNA methylation reprogramming during germ cell development, and the methylome of PGCs is reset to an oocyte/ovary-like pattern at 9 days post fertilization(9 dpf). When DNA methyltransferase(DNMT) activity in juveniles was blocked after 9 dpf, the zebrafish developed into females. We also show that Tet3 is involved in PGC development. Notably, we find that DNA methylome reprogramming during adult zebrafish sex transition is similar to the reprogramming during the sex differentiation from 9 dpf PGCs to sperm. Furthermore, inhibiting DNMT activity can prevent the female-to-male sex transition, suggesting that methylation reprogramming is required for zebrafish sex transition. In summary, DNA methylation plays important roles in zebrafish germ cell development and sexual plasticity.     

思茅松叶绿体基因组密码子偏好性分析

密码子偏好性(codon usage bias)是指同义密码子的使用频率不同的现象,该现象广泛存在于植物中.本研究利用Codon W 1.4.2和CUSP软件分析思茅松(Pinus kesiya var.langbianensis)叶绿体基因组的45条CDS,结果显示思茅松叶绿体基因组密码子第三位碱基的GC含量为29.63％,偏好以AT碱基结尾;ENC值在37.66～60.30之间,且ENC值＞45的CDS有37个,占总参试基因的82.22％;GC1、GC2、GC3与GCall均为极显著相关,GC3与ENC呈显著相关.中性绘图分析显示GC12和GC3的相关系数为-0.1114,回归系数为-0.1111;ENC-plot软件分析显示大部分基因与标准曲线的距离较远;PR2-plot软件分析显示思茅松叶绿体基因组在密码子的碱基使用频率方面,T＞A,G＞C.这些说明思茅松叶绿体基因密码子偏好性的主要影响因素为选择,突变的作用较小.本研究为思茅松种源选择、系统发育等研究提供科学依据.     

普通烟草NtODB基因的电子克隆、表达及生物信息学分析

ODB基因在植物同源重组依赖性的DNA双键断裂修复过程中起重要作用,对植物诱变育种具有潜在的应用价值.克隆烟草NtODB基因并分析其表达特征为丰富ODB基因在同源重组DNA修复过程中的作用提供证据.为得到烟草NtODB基因序列,采用电子克隆技术获得该基因cDNA序列并克隆验证.进一步使用生物信息学方法分析该基因表达特征...     

Adult-repopulating lymphoid potential of yolk sac blood vessels is not confined to arterial endothelial cells

Science China Life Sciences - During embryogenesis, hematopoietic stem progenitor cells (HSPCs) are believed to be derived from hemogenic endothelial cells (HECs). Moreover, arterial feature is...     

人体动脉血气波浪式变化特点的实验证据—同时间动、静脉血波浪式变化幅度的不同*

目的: 人动脉血来源是右心系统并在肺脏进行气体交换的静脉血,右心系统的静脉血是否存在波浪式信号目前尚没有证据支持,本研究旨在对比同时间动、静脉血中信号的连续变化特点。方法: 选择心功能正常,需要连续监测动脉血流动力学变化的患者6 例,4男2女,年龄（59.00±16.64） 岁,体质量（71.67±10.37）kg,左心射血分数（LVEF）（61.33±2.16)%。患者签署知情同意书后,选择心功能正常需要监测动、静脉血流动力学变化的患者6 例,连续同时桡动脉、颈内静脉逐搏取血,测定PaO₂。选取2个典型呼吸周期,用于分析同时段动、静脉血气的波浪式变化。分别比较患者血氧分压最高和最低值,以验证同时段动、静脉血气是否都存在周期性波浪式信号变化。此外,将患者动脉、静脉血气周期性波浪式信号的变化幅度进行统计学t 检验分析,比较有无差异。结果: 共6例患者,抽取动、静脉血液充满肝素化细长塑化管需要15~16次心跳,即取血需要15~16次心跳,全部覆盖超过2个呼吸周期。所有患者动脉血气中PaO₂均呈现明显的波浪式变化（P<0.05）,幅度是（9.96±5.18）mmHg,是均值的（8.09±2.43）%。患者静脉血气中PaO₂波动幅度并不明显,为（1.63±0.41）mmHg,是均值的（3.91±1.22）%,与动脉血气组相比有明显统计学差异（P<0.05）。结论: 采用同时连续逐搏动、静脉取血血气分析法证实,患者自主呼吸时动脉血气有明显的周期性波浪式变化信号,而静脉血气几乎没有周期性波浪式变化信号（很弱）,说明动脉血气波浪式信号主要是由于肺通气过程中吸气和呼气期产生肺泡中氧分压规律性上升和下降,通过离开肺毛细血管与肺泡氧气压力平衡的动脉化血液,经过左心室搏血进入动脉血管系统所致。     

Quantifying ecosystem service trade‐offs for plantation forest management to benefit provisioning and regulating services

There is increasing interest worldwide regarding managing plantation forests in a manner that maintains or improves timber production, enhances ecosystem services, and promotes long‐term sustainability of forest resources. We selected the Gan River Basin, the largest catchment of Poyang Lake and a region with a typical plantation distribution in South China, as the study region. We evaluated and mapped four important forest ecosystem services, including wood volume, carbon storage, water yield, and soil retention at a 30 × 30 m resolution, then quantified their trade‐offs and synergies at the county and subwatershed scales. We found that the wood volume and carbon storage services, as well as the soil retention and water yield, exhibited synergistic relationships. However, the carbon storage displayed a trade‐off relationship with the water yield. Additionally, we compared the beneficial spatial characteristics among dominant species in the study region. The results showed that the Chinese fir forest and the pine forest exhibited lower overall benefits than natural forests including the broad‐leaved forest and the bamboo forest. To propose a suitable management strategy for the study region, method of spatial cluster analysis was used based on the four eco‐services at the subwatershed scale. The basin was divided into four management groups instead of treating the region as a homogenous management region. Finally, we proposed more specific and diverse management strategies to optimize forest benefits throughout the entire region.     

Synthesis and structure of a new trinuclear nickel(II) complex bridged by N‐[3‐(Dimethylamino)propyl]‐N′‐(2‐hydroxyphenyl)oxamido: in vitro anticancer activities,and reactivities toward DNA and protein

A new trinickel(II) complex bridged by N‐[3‐(dimethylamino)propyl]‐ N ′‐(2‐hydroxylphenyl)oxamido (H₃pdmapo), namely [Ni₃(pdmapo)₂(H₂O)₂]?4CH₃OH, was synthesized and characterized by X‐ray single‐crystal diffraction and other methods. In the molecule, two symmetric cis‐ pdmapo^3? mononickel(II) complexes as a “complex ligand” using the carbonyl oxygen atoms coordinate to the center nickel(II) ion situated on an inversion point. The Ni···Ni distance through the oxamido bridge is 5.2624(4) Å. The center nickel(II) ion and the lateral ones have octahedral and square‐planar coordination geometries, respectively. In the crystal, a three‐dimensional supramolecular network dominated by hydrogen bonds is observed. The reactivity toward DNA/protein bovine serum albumin (BSA) revealed that the complex could interact with herring sperm DNA (HS‐DNA) through the intercalation mode and quench the intrinsic fluorescence of BSA via a static mechanism. The in vitro anticancer activities suggested that the complex is active against the selected tumor cell lines.