Linking seasonal inorganic nitrogen shift to the dynamics of microbial communities in the Chesapeake Bay

Seasonal shifts of dissolved inorganic nitrogen (DIN) and the dynamics of microbial communities for nitrogen transformation were investigated in the water column of Chesapeake Bay. The relative abundance of nitrogen over phosphorus (N*) showed a strong seasonal and spatial pattern: gradually decreased from upstream to downstream; high in winter and low in summer. Because the phosphorus concentration remained relatively stable, the spatiotemporal pattern of N* implied that a substantial fraction of DIN was removed in the bay, especially in summer. Correlation analyses indicated the functional microbial communities and environmental variables, such as temperature, dissolved oxygen, salinity, played important roles for connecting the seasonal variation of N*. Among them, temperature was the trigger factor. High temperature in the summer induced the growth of functional microbes, which subsequently consumed a large portion of DIN inputted from the tributaries and reduced the N*. The current study provided the relative importance of microbial communities and environmental variables in driving the DIN loss in the bay.     

黔中喀斯特山地不同森林类型的地表径流及影响因素

采用固定样地定位监测方法,于2001-2005年研究了黔中喀斯特山地不同森林类型对地表径流的影响。结果表明,不同林分类型的年地表径流量均值为11.108mm、林分类型间变幅为1.765-22.934mm、年际间变幅为10.553-11.699mm,退耕还林幼林(22.934mm)>针叶林(17.236mm)>针阔混交林(10.770mm)>阔叶林(8.876mm)。不同森林类型年地表径流量的季节变化为夏季>春季>秋季>冬季,同降雨量的季节变化趋势相一致。与同生物气候带、不同生物气候带森林相近类型的径流量规律相似,反映出黔中喀斯特山地森林与其它森林地表径流量规律的相似性。其中喀斯特山地森林中灌木林地表径流量与其它地带性和非地带性森林中灌木林地表径流量变化的相异性又反映出黔中喀斯特山地森林地表径流的特殊性,这种特殊性主要是成土母岩造成的。地表径流系数的季节变化趋势中,退耕还林幼林为夏季>春季>秋季>冬季,针叶林和针阔混交林为夏季>春季>冬季>秋季,灌木林和阔叶林为春季>夏季>冬季>秋季,这种差异与不同林分类型组成树种的生活型有关。旬地表径流量与反映温度和水分的气象指标间的单相关性达显著水平,多元回归方程模拟表明衡量温度的相关指标对地表径流量的贡献率高于降水,这反映了温度对近地气团的控制作用,进而影响区域降水和林地径流量。森林不同层片特征对地表径流量的影响具有互补性和抑制性,受森林群落组成、结构和发育的共同影响。年地表径流量受小生境和林地表层土壤特性的综合影响,地表径流量随坡度的增大而增加、随海拔的升高而降低,与毛管孔隙度和总孔隙度的负相关性达显著水平,多元回归方程模拟发现容重的贡献率达-96.54%。     

一次陆源降雨污水引起血红哈卡藻赤潮的成因

以2007年烟台四十里湾海域血红哈卡藻(Akashiwo sanguinea Hirasaka)赤潮为对象,研究赤潮消长与水环境因子的关系。研究发现大量陆源降雨污水输入后,海水盐度急剧下降、营养盐大幅增加,特别是活性磷酸盐浓度明显增加,促进了血红哈卡藻的生长繁殖并最终形成赤潮。赤潮发生前海区第一优势种为尖刺拟菱形藻(Pseudo-nitzschia pungens Halse),优势度0.47(0.42—0.52),多样性指数2.63(2.43—2.89);赤潮发生时血红哈卡藻密度范围1.05×105—4.10×106个/L,优势度0.92(0.83—0.99),多样性指数0.27(0.15—0.64);赤潮消退后中肋骨条藻(Skeletonema costatum Cleve)为第一优势种,优势度0.49(0.43—0.55),多样性指数2.46(2.19—2.84)。赤潮的发生、发展、消亡与化学需氧量(COD)、无机氮(DIN)、活性磷酸盐(DIP)、富营养化指数(E)呈显著正相关(P<0.05),与盐度呈显著负相关(P<0.01)。赤潮前、后该海域为贫营养、P限制、叶绿素a含量中等,赤潮期间该海域为富营养、P限制、叶绿素a含量高。通过影响力评定,活性磷酸盐、COD、盐度是此次赤潮发生的主要诱发因子,当活性磷酸盐含量低于0.3μmol/L时,硅藻逐渐取代甲藻,此次赤潮消散。     

五株鸽副粘病毒国内分离株F基因片段的克隆与分子特性

鸽Ⅰ型副粘病毒病(鸽瘟)是由鸽Ⅰ型副粘病毒(Pigeon paramyxivirus-Ⅰ,PPMV-Ⅰ)引起的一种高度接触性传染病,是危害养鸽业的主要疫病之一.     

Methylation protects miRNAs and siRNAs from a 3'-end uridylation activity in Arabidopsis

Small RNAs of 21-25 nucleotides (nt), including small interfering RNAs (siRNAs) and microRNAs (miRNAs), act as guide RNAs to silence target-gene expression in a sequence-specific manner. In addition to a Dicer homolog, DCL1, the biogenesis of miRNAs in Arabidopsis requires another protein, HEN1. miRNAs are reduced in abundance and increased in size in hen1 mutants. We found that HEN1 is a miRNA methyltransferase that adds a methyl group to the 3'-most nucleotide of miRNAs, but the role of miRNA methylation was unknown. Here, we show that siRNAs from sense transgenes, hairpin transgenes, and transposons or repeat sequences, as well as a new class of siRNAs known as trans-acting siRNAs, are also methylated in vivo by HEN1. In addition, we show that the size increase of small RNAs in the hen1-1 mutant is due to the addition of one to five U residues to the 3' ends of the small RNAs. Therefore, a novel uridylation activity targets the 3' ends of unmethylated miRNAs and siRNAs in hen1 mutants. We conclude that 3'-end methylation is a common step in miRNA and siRNA metabolism and likely protects the 3' ends of the small RNAs from the uridylation activity.     

中华按蚊CYP6Y亚家族基因的鉴定和生物信息学分析

【目的】鉴定中华按蚊Anopheles sinensis CYP6Y亚家族基因,分析它们的结构和特征,推测其可能的功能。【方法】以冈比亚按蚊An. gambiae CYP6Y1作为询问序列,通过双向Blast方法检索中华按蚊转录组中CYP6Y亚家族基因,并通过生物信息学方法分析基因结构、特征及可能的功能。【结果】从中华按蚊转录组测序数据中鉴定出2条CYP6Y亚家族基因,分别命名为AsCYP6Y1（GenBank登录号：KF709397）和AsCYP6Y2（GenBank登录号：KF709398）。序列分析显示,AsCYP6Y1和AsCYP6Y2全长分别为1 713 bp和1 815 bp,分别编码502和526个氨基酸。基因结构分析显示,该亚家族基因仅含有1个相位1型内含子并与其他P450基因形成保守的共线性分布。蛋白结构分析显示,这2个基因编码的蛋白含P450特有的5个特征序列和6个底物结合位点,且均不存在信号肽,其亚细胞定位为细胞质。3D结构分析显示,AsCYP6Y1有18条α螺旋和13股反向平行的β折叠,AsCYP6Y2有19条α螺旋和11股反向平行的β折叠。通过同样的方法,在达林按蚊An. darlingi中也鉴定出2个CYP6Y亚家族基因。系统进化分析显示,AsCYP6Y1和AsCYP6Y2分别与其他3种按蚊的CYP6Y1和CYP6Y2聚成一支,Bootstrap值均大于90%。替换率分析显示,中华按蚊AsCYP6Y1和AsCYP6Y2与其他3种按蚊同源基因的Ka/Ks均小于1。相对进化速率分析显示,中华按蚊CYP6Y和CYP6M亚家族的相对进化速率均显著快于CYP6P亚家族,而CYP6Y和CYP6M亚家族之间没有显著差异。【结论】在中华按蚊和达林按蚊中存在2个CYP6Y亚家族基因,之前在冈比亚按蚊和不吉按蚊An. funestus中也发现2个CYP6Y亚家族基因,表明CYP6Y亚家族基因可能在按蚊属广泛存在,且可能为按蚊属昆虫所特有。     

Trans‐3,5,4´‐trimethoxystilbene reduced gefitinib resistance in NSCLCs via suppressing MAPK/Akt/Bcl‐2 pathway by upregulation of miR‐345 and miR‐498

Despite initial dramatic efficacy of epidermal growth factor receptor (EGFR) tyrosine kinase inhibitors (EGFR‐TKIs) in EGFR‐mutant lung cancer patients, subsequent emergence of acquired resistance is almost inevitable. Resveratrol and its derivatives have been found to exert some effects on EGFR‐TKI resistance in non‐small cell lung cancer (NSCLC), but the underlying mechanisms remain unclear. We screened several NSCLC cell lines with gefitinib resistance by MTT assay and analysed the miR‐345/miR‐498 expression levels. NSCLC cells were pre‐treated with a resveratrol derivative, trans‐3,5,4‐trimethoxystilbene (TMS) and subsequently challenged with gefitinib treatment. The changes in apoptosis and miR‐345/miR‐498 expression were analysed by flow cytometry and q‐PCR respectively. The functions of miR‐345/miR‐498 were verified by CCK‐8 assay, cell cycle analysis, dual‐luciferase reporter gene assay and immunoblotting analysis. Our results showed that the expression of miR‐345 and miR‐498 significantly decreased in gefitinib resistant NSCLC cells. TMS pre‐treatment significantly upregulated the expression of miR‐345 and miR‐498 increasing the sensitivity of NSCLC cells to gefitinib and inducing apoptosis. MiR‐345 and miR‐498 were verified to inhibit proliferation by cell cycle arrest and regulate the MAPK/c‐Fos and AKT/Bcl‐2 signalling pathways by directly targeting MAPK1 and PIK3R1 respectively. The combination of TMS and gefitinib promoted apoptosis also by miR‐345 and miR‐498 targeting the MAPK/c‐Fos and AKT/Bcl‐2 signalling pathways. Our study demonstrated that TMS reduced gefitinib resistance in NSCLCs via suppression of the MAPK/Akt/Bcl‐2 pathway by upregulation of miR‐345/498. These findings would lay the theoretical basis for the future study of TMS for the treatment of EGFR‐TKI resistance in NSCLCs.     

PNAS-4 expression and its relationship to p53 in colorectal cancer

PNAS-4 is a novel pro-apoptotic protein activated during the early response to DNA damage; however, the molecular mechanisms and pathways regulating PNAS-4 expression in tumors are not well understood. We hypothesized that PNAS-4 is a p53 down-stream target gene and designed this study. We searched online for putative p53-binding sites in the entire PNAS-4 gene and did not find any corresponding information. In HCT116 colon cancer cells, after being transfected with small interfering RNA to silence p53, the expressions of PNAS-4 and other known p53 target gene (Apaf1, Bax, Fas and Dr5) were determined by real-time PCR. We found that PNAS-4 was up-regulated while Apaf1, Bax, Fas and Dr5 were down-regulated. We then examined the expression of PNAS-4 and p53 mutation in colorectal cancer patients. PNAS-4 expressed both in colorectal cancers and normal tissues, but compared with paired control, PNAS-4 was up-regulated in cancers (P = 0.018). PNAS-4 overexpression ratios were correlated to the p53 mutant status (P = 0.001). The mean PNAS-4 expression levels of p53 mutant homozygote group and heterozygote group were higher than that of p53 wild type group (P = 0.013). The expression ratios of PNAS-4 (every sample in relative to its paired normal mucosa) were different between negative lymph node metastasis (66% up-regulated, 34% down-regulated) and positive metastasis (42% up-regulated, 58% down-regulated). Taken together, these findings suggested that PNAS-4 was not a p53 target, but overexpression of PNAS-4 was correlated to p53 inactivity in colorectal cancer.     

尾叶桉人工林生物量和生产力的研究

按径级标准木法测定了尾叶桉（Ｅｕｃａｌｙｐｔｕｓ ｕｒｏｐｈｙｌｌａ）器官生物量,建立了林木器官干重（ｗ）与胸径和树高（Ｄ＾３Ｈ）关系的相对生长方程,进而计算出尾叶桉林分的生物量和生产力。结果表明：东门林场１０年生尾叶桉人工林平均生物量为１４４．８５ｔ ｈｍ＾２,各器官生物量的在小序列为：干材（７１．６９％）〉根（１４．２１％）〉皮）７．９９％）〉枝（４．７１％）〉叶（４．７１％）〉叶（１．４０％     

副产物途径的缺失对大肠杆菌合成D-1,2,4-丁三醇的影响

【目的】敲除副产物途径,提高重组大肠杆菌D-1,2,4-丁三醇(D-1,2,4-Butanetriol,BT)产量。【方法】利用Red重组技术敲除木糖途径xyl AB基因及2-酮-3-脱氧木糖酸代谢途径的yag E及yjh H基因,考察其对重组菌生长、BT生产及副产物积累的影响。【结果】敲除xyl AB基因后,重组菌生物量降低57%,BT产量降低20%,单位菌体产量提高84%,木糖酸积累量提高52%。yag E或yjh H基因单独缺失重组菌生物量分别提高10%和5%,BT产量提高36%和14%。基因共同缺失后重组菌生物量降低了21%,BT产量提高184%,达到2.44 g/L,单位菌体产量提高258%。而共同敲除两途径,生物量降低了72%,虽然单位菌体产量提高了约4倍,但BT产量仅提高43%。p H调控下,重组菌木糖酸积累量下降,BT产量进一步提高,最高达3.11 g/L。【结论】xyl AB基因缺失后,虽有利于提高BT途径的效率,但由于木糖无法进入PPP途径及木糖酸积累,造成生物量降低,不利于BT合成。单独敲除yag E或yjh H后BT产量略有提高,而共同敲除这两基因更为有效地调整碳流向BT合成偏转。两途径共同敲除利于BT的合成,但由于菌体量的减少,无法大量获得BT。