Purification and characterization of glutathione reductase from rainbow trout (Oncorhynchus mykiss) liver and inhibition effects of metal ions on enzyme activity

Glutathione reductase (E C: 1.8.1.7; GR) was purified from rainbow trout (Oncorhynchus mykiss) liver, and some characteristics of the enzyme were investigated. The purification procedure consisted of four steps: preparation of homogenate, ammonium sulfate fractionation, affinity chromatography on 2',5'-ADP Sepharose-4B and gel filtration chromatography on Sephadex G-200. The enzyme, with a specific activity of 27.45 U/mg protein, was purified 1,654-fold with a yield of 41%. Optimal pH, stable pH, optimal temperature, optimum ionic strength, molecular mass, KM and Vmax values for GSSG and NADPH were also determined for the enzyme. In addition, Ki values and inhibition types were determined for GSH and NADP+. Additionally, inhibitory effects of metal ions (Cd+2, Cu+2, Pb+2, Hg+2, Fe+3 and Al+3) on glutathione reductase were investigated. Ki constants and IC50 values for metal ions were determined by Lineweaver-Burk graphs and plotting activity % vs. [I], respectively. IC50 values of Cd+2,Cu+2, Pb+2, Hg+2, Fe+3 and Al+3 were 0.0655, 0.082, 0.122, 0.509, 0.797 and 0.804 mM, and the Ki constants for Cd+2 and Cu+2 were 0.104+/-0.001, 0.117+/-0.001, respectively.     

Predicting tropospheric ozone concentrations in different temporal scales by using multilayer perceptron models

This study encompasses ozone modeling in the lower atmosphere. It was aimed to develop an appropriate neural network model in order to predict ozone concentrations in various temporal scales as a function of meteorological variables and air quality parameters. All data were collected from Dilovasi, Turkey as this site represents typical industrial regions with major air pollution problems. In the study performance of the multilayer perceptron models were tested for both annual and seasonal periods as meteorological conditions highly influence the ozone levels. Among the various architectures, a network of two hidden layers with fifteen neurons was found to give successful predictions. Modeling efficiency of the developed network was also evaluated for day light and night time data of warming season exhibiting highest ozone levels. Furthermore, principle component analysis was performed by using annual data in order to reduce the number of input variables describing ozone formation. Model run with principle components has also provided satisfying performance.     

Streptomyces sp. TEM 33 possesses high lipolytic activity in solid-state fermentation in comparison with submerged fermentation

Solid-state fermentation (SSF) is a bioprocess that doesn’t need an excess of free water, and it offers potential benefits for microbial cultivation for bioprocesses and product development. In comparing the antibiotic production, few detailed reports could be found with lipolytic enzyme production by Streptomycetes in SSF. Taking this knowledge into consideration, we prefer to purify Actinomycetes species as a new source for lipase production. The lipase-producing strain Streptomyces sp. TEM 33 was isolated from soil and lipase production was managed by solid-state fermentation (SSF) in comparison with submerged fermentation (SmF). Bioprocess-affecting factors like initial moisture content, incubation time, and various carbon and nitrogen additives and the other enzymes secreted into the media were optimized. Lipase activity was measured as 1.74 ± 0.0005 U/g dry substrate (gds) by the p-nitrophenylpalmitate (pNPP) method on day 6 of fermentation with 71.43% final substrate moisture content. In order to understand the metabolic priority in SSF, cellulase and xylanase activity of Streptomyces sp. TEM33 was also measured. The microorganism degrades the wheat bran to its usable form by excreting cellulases and xylanases; then it secretes the lipase that is necessary for degrading the oil in the medium.     

Integrative Modeling of Small Artery Structure and Function Uncovers Critical Parameters for Diameter Regulation

Organ perfusion is regulated by vasoactivity and structural adaptation of small arteries and arterioles. These resistance vessels are sensitive to pressure, flow and a range of vasoactive stimuli. Several strongly interacting control loops exist. As an example, the myogenic response to a change of pressure influences the endothelial shear stress, thereby altering the contribution of shear-dependent dilation to the vascular tone. In addition, acute responses change the stimulus for structural adaptation and vice versa. Such control loops are able to maintain resistance vessels in a functional and stable state, characterized by regulated wall stress, shear stress, matched active and passive biomechanics and presence of vascular reserve. In this modeling study, four adaptation processes are identified that together with biomechanical properties effectuate such integrated regulation: control of tone, smooth muscle cell length adaptation, eutrophic matrix rearrangement and trophic responses. Their combined action maintains arteries in their optimal state, ready to cope with new challenges, allowing continuous long-term vasoregulation. The exclusion of any of these processes results in a poorly regulated state and in some cases instability of vascular structure.     

Budding yeast Pch2, a widely conserved meiotic protein, is involved in the initiation of meiotic recombination

Budding yeast Pch2 protein is a widely conserved meiosis-specific protein whose role is implicated in the control of formation and displacement of meiotic crossover events. In contrast to previous studies where the function of Pch2 was implicated in the steps after meiotic double-strand breaks (DSBs) are formed, we present evidence that Pch2 is involved in meiotic DSB formation, the initiation step of meiotic recombination. The reduction of DSB formation caused by the pch2 mutation is most prominent in the sae2 mutant background, whereas the impact remains mild in the rad51 dmc1 double mutant background. The DSB reduction is further pronounced when pch2 is combined with a hypomorphic allele of SPO11. Interestingly, the level of DSB reduction is highly variable between chromosomes, with minimal impact on small chromosomes VI and III. We propose a model in which Pch2 ensures efficient formation of meiotic DSBs which is necessary for igniting the subsequent meiotic checkpoint responses that lead to proper differentiation of meiotic recombinants.     

Label-Free Recognition of Drug Resistance via Impedimetric Screening of Breast Cancer Cells

We present a novel study on label-free recognition and distinction of drug resistant breast cancer cells (MCF-7 DOX) from their parental cells (MCF-7 WT) via impedimetric measurements. Drug resistant cells exhibited significant differences in their dielectric properties compared to wild-type cells, exerting much higher extracellular resistance (R_extra). Immunostaining revealed that MCF-7 DOX cells gained a much denser F-actin network upon acquiring drug resistance indicating that remodeling of actin cytoskeleton is probably the reason behind higher R_extra, providing stronger cell architecture. Moreover, having exposed both cell types to doxorubicin, we were able to distinguish these two phenotypes based on their substantially different drug response. Interestingly, impedimetric measurements identified a concentration-dependent and reversible increase in cell stiffness in the presence of low non-lethal drug doses. Combined with a profound frequency analysis, these findings enabled distinguishing distinct cellular responses during drug exposure within four concentration ranges without using any labeling. Overall, this study highlights the possibility to differentiate drug resistant phenotypes from their parental cells and to assess their drug response by using microelectrodes, offering direct, real-time and noninvasive measurements of cell dependent parameters under drug exposure, hence providing a promising step for personalized medicine applications such as evaluation of the disease progress and optimization of the drug treatment of a patient during chemotherapy.     

Bioaccessibility of heavy metals in rapa whelk Rapana venosa (Valenciennes, 1846): Assessing human health risk using an in vitro digestion model

Instead of total metal concentration measurements in seafood, bioaccessibility is a more important parameter for human health risk assessment. Therefore, bioaccessibility of Cd, Cr, Cu, Mn, Ni, Pb, and Zn in the edible soft tissues of rapa whelk (Rapana venosa Valenciennes, 1846) collected along the southern Black Sea coast were investigated using an in vitro digestion model. Zn was detected at the highest concentration, whereas Ni was the lowest for total metal concentrations. Total Cd and Pb concentration in the tissues were found to be higher than maximum permissible limits set by European Commission. The bioaccessibility of metals in the tissues was found to be decreased in the order: Cu (77.11%) > Cd (70.13%) > Zn (64.52%) > Ni (61.27%) > Pb (50.53%) > Cr (43.41%) > Mn (22.59%). While significant positive linear regressions were observed between the total and bioaccessible concentrations for Mn, Pb, and Ni, significant negative linear regressions were found for Cd in the tissues (p < 0.05). The hazard quotients (HQ) calculated using bioaccessible heavy metal amount were detected lower than the limit value (HQ < 1), which may not pose a potential hazard to humans declared by US Environmental Protection Agency. However, the consumption of rapa whelk may cause a potential risk concerning human health for the Cd and Pb levels in case of increased serving sizes and portions.     

Length–weight relationships of 24 fish species from the North Aegean Sea, Turkey

Length–weight relationship parameters of the form W = aL^b are presented for 24 fish species from the North Aegean Sea: Scyliorhinus canicula, Mustelus mustelus, Squalus acanthias, Torpedo marmorata, Dipturus oxyrinchus, Raja clavata, R. miraletus, Dasyatis pastinaca, Gymnura altavela, Myliobatis aquila, Chimaera monstrosa, Conger conger, Argentina sphyraena, Chlorophthalmus agassizi, Caelorinchus caelorhincus, Gadiculus argenteus argenteus, Phycis blennoides, Hoplostethus mediterraneus, Capros aper, Macroramphosus scolopax, Helicolenus dactylopterus, Peristedion cataphractum, Lesueurigobius friesii and Lepidopus caudatus.