Gut microbiome in gastrointestinal cancer: a friend or foe?

The impact of the gut microbiome on host health is becoming increasingly recognized. To date, there is growing evidence that the complex characteristics of the microbial community play key roles as potential biomarkers and predictors of responses in cancer therapy. Many studies have shown that altered commensal bacteria lead to cancer susceptibility and progression in diverse pathways. In this review, we critically assess the data for gut microbiota related to gastrointestinal cancer, including esophageal, gastric, pancreatic, colorectal cancer, hepatocellular carcinoma and cholangiocarcinoma. Importantly, the underlying mechanisms of gut microbiota involved in cancer occurrence, prevention and treatment are elucidated. The purpose of this review is to provide novel insights for applying this understanding to the development of new therapeutic strategies in gastrointestinal cancer by targeting the microbial community.     

水资源约束下西北干旱区城市经济发展与城市化阈值

城市化水平阈值是指在水资源硬约束下,在确保经济发展达到一定速度与规模、生态环境建设得到基本保障、并具备足以支撑城市接纳一定数量农民进城转为非农人口的经济能力时,能达到的“农转非”人口占总人口的最大比例。以干旱区河西走廊为例,分析了在水资源约束下城市经济发展总量及其对应的城市化阈值。采用阈值模型计算表明,未来30a在不跨区调水的前提下,河西走廊总需水量的上限阈值为7.81×109m3,其中生态需水、生产需水和生活需水比例调整为13.2:83.5:3.3,总需水量对应的国内生产总值为1.81×1011元,历年平均增长速度最快可达到6.91%,第一、二、三产业结构调整为18.99:47.20:33.81。在总需水量阈值、经济总量、需水结构与产业结构调整优化和经济增长速度不低于7%、农业需水按0.61%的速度退水9.12×108m3、生态需水比例不低于13%等多重条件约束下,求得河西走廊未来30a能够达到的总人口为5.82×106人,城镇非农业人口可达到2.05×106人,城市化水平可达到35.14%,这一水平仅相当于中国2001年的平均城市化水平。在跨区调水1.31×109m3的条件下,城市化水平可望达到47.17%。进而采用总人口人均拥有的GDP、非农业人口人均拥有的第二、三产业增加值、农业人口人均拥有的第一产业增加值3项经济指标对水资源约束下经济发展总量对城市化水平的保障程度进行了验证分析。由于各城市的缺水状况、取水条件、发展性质、发展阶段与经济发展实力与前景等各不相同,致使不同城市之间对应的总需水量、经济总量、经济增长速度和城市化水平等均表现出较大的差异性。     

基于NGS的染色质测序在肿瘤研究中的应用

染色质是真核生物细胞核内由核酸和蛋白质组成的复合结构,有着精密且复杂的三维结构。染色质除基本的DNA序列外,内部还存在着不同化学修饰,DNA-蛋白质相互作用,DNA-DNA相互作用和DNA-RNA相互作用,以上这些若发生改变都可能在肿瘤发生发展过程中起到至关重要的作用。通过不同的染色质测序方法,可以解析出这些改变,并进一步加深研究者对肿瘤形成机制的理解,最终应用于肿瘤的治疗。本文对常见的染色质测序技术部分原理和应用进行综述。     

Changes in the Chlorophyll Content and Cytokinin Levels in the Top Three Leaves of New Plant Type Rice During Grain Filling

This paper reports the ways that the differences in leaf senescence are related to grain filling, grain yield, and the dynamics of cytokinins (CKs) in the top three leaves of four field-grown new plant type (NPT) rice, a tropical japonica developed at the International Rice Research Institute, Philippines, to increase the yield potential of rice. The chlorophyll content in leaves decreased from flowering to maturity in all the NPT lines, whereas the grain filling percentage was higher in the fast-senescing NPT line than in slow-senescing NPT line. Grain yield was positively correlated with senescence in the flag leaf. Rapid changes in the CK levels were recorded in the leaves of the fast-senescing line, whereas the CK levels were relatively stable in leaves of the slow-senescing line, suggesting that the dynamics of CKs in the fast-senescing line are vital for fast senescence. There were no significant changes in bioactive CKs, CK O-glucosides (storage CKs), and cis-zeatin derivatives in different leaves of the slow-senescing NPT line between 0 and 3 weeks after flowering, suggesting that the content of these CKs is relatively stable during grain filling. A progressive increase in levels of bioactive CKs was positively correlated with gradual accumulation of CK N-glucosides (inactive CKs) in the top three leaves of the slow-senescing NPT line, whereas the decrease of bioactive CKs in the flag leaf of the fast-senescing line was accompanied by accumulation of CK O-glucosides. These results suggest that there is a higher rate of biosynthesis and/or import of bioactive CKs as well as their turnover which may favor delay of leaf senescence in the slow-senescing NPT line.     

农田土壤紧实的发生、影响及其改良

土壤紧实是影响农田土壤质量和作物生长的关键障碍因子之一,是当前土壤功能及农田生态健康研究领域的重点。本文分析了近年来国内外关于土壤紧实的发生原因、影响因素、改良措施的研究进展。除农业机械以外,耕作制度和水肥管理对紧实的影响也不可忽视,此外,各因素的影响程度会随时空而变化。在综合分析已有研究的基础上,就目前土壤紧实研究中亟待解决的问题进行了探讨,认为今后应加强以下几方面的研究:1)从分子方面探讨抗紧实作物的遗传机理;2)田间可视化评价结合模型研究紧实下土壤-作物的变化过程;3)深入探讨土壤紧实的改良措施,为今后农田健康的相关研究提供参考。     

Molecular genetic characterization of rice seed lipoxygenase 3 and assessment of its effects on seed longevity

Lipoxygenases (LOXs) are enzymes involved in lipid peroxidation. Here we reported the identification, molecular and functional characterization of the gene encoding rice (Oryza sativa L.) seed LOX3 (sLOX3). Via a map-based cloning strategy we identified Os03g0700400 as the candidate gene encoding sLOX3. Further functional complementary test and biochemical characterization of the recombinant Os03g0700400 protein verified the identification. The sLOX3 gene was highly expressed in roots, moderately in embryos and very weakly in leaves, leaf sheaths and stems. Transient expression experiment (in rice protoplasts) and subsequent laser confocal microscopic analysis demonstrated that the sLOX3 protein was localized into the cytosol. We next showed that overexpression of sLOX3 in a japonica sLOX3-normal rice cultivar, Wuyunjing 7 accelerated the decrease of seed germination ability when the seeds were routinely stored, which demonstrated that sLOX3 had a negative effect on seed longevity (storability). Meanwhile, an increased occurrence of embryo decay was observed in the same transgenic seeds, suggesting that sLOX3 might negatively affect seed longevity by facilitating colonization of particular seed pathogens. Our result forwarded the understanding of the effects of 9-LOX on rice seed longevity.     

Variation in the significant environmental factors affecting larval abundance of four major Chinese carp species: fish spawning response to the Three Gorges Dam

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