Remarkable similarity in genome nucleotide sequences between the Schwarz FF-8 and AIK-C measles virus vaccine strains and apparent nucleotide differences in the phosphoprotein gene

The Schwarz FF-8 (FF-8) and AIK-C measles virus vaccine strains are currently used for vaccination in Japan. Here, the complete genome nucleotide sequence of the FF-8 strain has been determined and its genome sequence found to be remarkably similar to that of the AIK-C strain. These two strains are differentiated only by two nucleotide differences in the phosphoprotein gene. Since the FF-8 strain does not possess the amino acid substitutions in the phospho- and fusion proteins which are responsible for the temperature-sensitivity and small syncytium formation phenotypes of the AIK-C strain, respectively, other unidentified common mechanisms likely attenuate both the FF-8 and AIK-C strains.     

Molecular systematics of caeciliid caecilians (Amphibia: Gymnophiona) of the Western Ghats, India

Together, Indian plus Seychelles caeciliid caecilian amphibians (Gymnophiona) constitute approximately 10% of the extant species of this order. A molecular phylogenetic analysis of all but one (or two) nominal species (16, in five genera) is presented based on mitochondrial (12S, 16S, cytb, cox1) and nuclear (RAG1) sequence data. Results strongly support monophyly of both Seychelles and peninsular Indian caeciliids, and their sister-group status. Within the Indian caeciliids, Indotyphlus and Gegeneophis are monophyletic sister genera. The phylogenetic position of Gegeneophis ramaswamii, Gegeneophis seshachari, and Gegeneophis carnosus are not well resolved, but all lie outside a well-supported clade of most northern Western Ghats Gegeneophis (madhavai, mhadeiensis, goaensis, danieli/nadkarnii). Most nominal species of Indian caeciliid are diagnosed by robust haplotype clades, though the systematics of G. carnosus-like forms in northern Kerala and southern Karnataka requires substantial further investigation. For the most part, Indian caeciliid species comprise narrowly distributed, allopatric taxa with low genetic diversity. Much greater geographic genetic diversity exists among populations referred to G. seshachari, such that some populations likely represent undescribed species. This, the first phylogenetic analysis of Indian caeciliids, generally provides additional support for recent increases in described species (eight since 1999), and a framework for ongoing taxonomic revision.     

A field guide to the caecilians of the Western Ghats, India

Caecilians are legless amphibians quite characteristic of the Western Ghats. Fourteen out of 16 Indian species occur in the Western Ghats and all are endemic. The present paper deals with the biology of caecilians with reference to external morphology and general breeding behaviour. It consolidates information on 26 morphological parameters which are used in caecilian identification. Metric multidimensional scaling of 16 species of caecilians using pair-wise euclidian distances calculated on the basis of 11 important morphometric parameters clearly depicts morphological distances between different species and more so the genera, thereby validating the classification. A field guide has been developed for the identification of caecilians based on a survey made all over the Western Ghats, observation of holotypes at the Natural History Museum, London and review of the literature. The study also reveals the microhabitat requirements of the caecilians. Further, the localities of caecilian distribution in the Western Ghats are mapped. The taxonomy of Indian caecilians is discussed.     

Characterization of yeast strains by fluorescence lifetime imaging microscopy

The results of fluorescence lifetime imaging microscopy of selected yeast strains were presented and the fact that the lifetime distributions can be successfully used for strain characterization and differentiation was demonstrated. Four strains of industrially relevant yeast Saccharomyces were excited at 405 nm and the autofluorescence observed within 440-540 nm. Using statistical tools such as empirical cumulative distribution functions with Kolmogorov-Smirnov testing, the four studied strains were categorized into three different groups for normal sample size of 70 cells slide(-1) at a significance level of 5%. The differentiation of all of the examined strains from one another was shown to be possible by increasing the sample size to 420 cells, which is achievable by taking the lifetime data at six different positions in the slide.     

Patterning limnological characteristics of the Chilika lagoon (India) using a self-organizing map

In this study, a self-organizing map (SOM) was utilized to classify habitats in the Chilika lagoon located in India, the largest lagoon ecosystem in Asia (maximum length, 64.3 km; mean width, 20.1 km). The lagoon was marginally eutrophic (nitrate, 0.25 ± 0.22 mg L⁻¹; orthophosphate, 0.26 ± 0.22 mg L⁻¹; n = 1,980, respectively) for six years (1999–2004), and it used to be warm, shallow, turbid and predominantly brackish. The SOM model successfully identified the changing patterns of limnology in the lagoon using the monthly limnological dataset from 30 study sites (July 1999–December 2004). Comparative re-sectoring evaluation of current monitoring sites was accomplished based on the outcome of the modeling. The new site clustering that emerged from the model was similar to conventional ones, and several sites were reorganized. Water physicochemistry was affected by freshwater inflow during monsoon and the new lagoon mouth constructed in September 2000, which resulted in variations in site characteristics in terms of limnology. The results of this study may provide information on the limnological patterns in Chilika lagoon, and they leave room for further study into functional changes in the lagoon ecology with respect to changes in climatic factor, freshwater flow and lagoon morphology.     

EspJ of enteropathogenic and enterohaemorrhagic Escherichia coli inhibits opsono-phagocytosis

A key strategy in microbial pathogenesis is the subversion of the first line of cellular immune defences presented by professional phagocytes. Enteropathogenic and enterohaemorrhagic Escherichia coli (EPEC and EHEC respectively) remain extracellular while colonizing the gut mucosa by attaching and effacing mechanism. EPEC use the type three secretion system effector protein EspF to prevent their own uptake into macrophages. EPEC can also block in trans the internalization of IgG-opsonized particles. In this study, we show that EspJ is the type three secretion system effector protein responsible for trans -inhibition of macrophage opsono-phagocytosis by both EPEC and EHEC. While EspF plays no role in trans -inhibition of opsono-phagocytosis, espJ mutants of EPEC or EHEC are unable to block uptake of opsonized sheep red blood cells (RBC), a phenotype that is rescued upon complementation with the espJ gene. Importantly, ectopic expression of EspJ^EHEC in phagocytes is sufficient to inhibit internalization of both IgG- and C3bi-opsonized RBC. These results suggest that EspJ targets a basic mechanism common to these two unrelated phagocytic receptors. Moreover, EspF and EspJ target independent aspects of the phagocytic function of mammalian macrophages in vitro .     

Effect of tamarind (Tamarindus indica) seed husk tannins on in vitro rumen fermentation

This study was conducted to determine the effect of tamarind seed husk (TSH) as a source of tannin on various parameters of rumen fermentation in vitro. The TSH contained 14% tannin (DM basis). The biological interference of TSH tannin on rumen fermentation was assessed using polyethylene glycol (PEG) 6000 as an indicator. Three compound feed mixtures (CFM) were prepared either without TSH (CFM-I), with 2.5% TSH (CFM-II) and with 7.5% TSH (CFM-III). Parameters studied were in vitro gas production with PEG, rate of substrate degradation, and microbial protein synthesis. Addition of PEG to TSH resulted in an increase in gas production from 5.5 to 16.5 ml per 200 mg DM. Presence of TSH tannin depressed cumulative gas production by 16.8% in CFM-II, and by 29.2% in CFM-III during initial stages of fermentation (i.e. at 8 h). Rate of substrate disappearance (T^1/2) was 14.4, 17.6 and 20.5 h in CFM-I, CFM-II and CFM-III, respectively. Irrespective of the carbohydrate source, presence of TSH tannin improved the efficiency of microbial protein synthesis in vitro. Thus, TSH is a natural source of tannin that can be used to beneficially manipulate rumen fermentation.     

Fisheries enhancement and biodiversity assessment of fish,prawn and mud crab in Chilika lagoon through hydrological intervention

The degraded state of the fragile ecosystem of Chilika lagoon on the east coast of India caused by natural changes and anthropogenic pressure was in the process of restoration through an effective hydrological intervention during 2000 after thorough scientific investigation including EIA study. The rich fisheries of Chilika lagoon that support livelihood of 0.2 million local fisherfolk was in dwindling state during the eco-degradation phase. Studies on fisheries and fish biodiversity of the lagoon for 4 years before and 4 years after the intervention showed the stark and rapid recovery of fishery immediately after opening of the new mouth with sixfold increase in average annual landing. The average productivity (11.3 t km⁻²) and CPUE (6.2 kg boat-day⁻¹) during post intervention phase registered 528 and 464% increase, as compared to Pre-intervention years. In total, 277 species of fish and shell fish were documented as occurring in Chilika lagoon before the hydrological intervention. Inventory survey for fish and shell fish species diversity during and after hydrological intervention documented 68 and 97 species, respectively. New records of 56 species of fish and shell fish (7 freshwater, 20 brackishwater and 29 marine) were documented from Chilika lagoon after the hydrological intervention. Analysis of commercial catches showed that the migratory species contributed to the bulk of catches (75% by species and 68% by catch weight). Fish yield and biodiversity seemed to be very sensitive to salinity and hydrologic dynamics of the lagoon. Correlation analysis indicated inverse relationship between water transparency and fish catch (R ² = 0.715; d.f. = 25; P < 0.01). Positive correlation between salinity and prawn landing (R ² = 0.542; d.f. = 25; P < 0.01) and salinity and mud crab landing (R ² = 0.628; d.f. = 25; P < 0.001). Average salinity for the whole lagoon was significantly increased by 42.7% (P < 0.007) as compared to pre-intervention situation. Maintenance of estuarine character of Chilika’s ecosystem particularly the salinity gradient, un-hindered auto-recruitment of fish and shell fish and prevention of destructive fishing are the key factors for fisheries enhancement. Unless carefully planned conservation and regulation measures are ensured with the active participation of local communities during the early phase of restoration, the present scenario of fisheries enhancement may not sustain for longer time.