Surface morphology of immunocompetent cells isolated from spleen of Bufo himalayanus (Günther)

Immunocompetent cells were isolated from spleen of B. himalayanus and studied surface morphology of the three different cell types--(i) plastic adherent; (ii) nylon wool adherent; and (iii) nylon wool non-adherent cells. As revealed by scanning electron microscopy, they resembled the macrophages, B and T cells, respectively. Presence of such cell types indicated that Bufo himalayanus possessed a well-organized immune system. Further work is needed to characterize the functional efficacy of these immunocompetent cells found in B. himalayanus.     

Differential DNA Endoreduplication and Protein Profile during Cotyledon Ontogeny of Vigna radiata

Differential regeneration response of the two cotyledon types. ‘Cot E’ (attached to the embryo) and ‘Cot’, of Vigna radiata have been reported earlier. The present preliminary study addresses V. radiata cotyledon development with respect to patterns of endoreduplication and protein accumulation. In this communication two distinct types of cotyledon (in relation to their attachment with the embryonal axis), differing in regeneration responses, were characterized in terms of polyploidy levels and profiles, and extent of protein synthesis/accumulation. The embryo development was studied histologically from the first day after fertilization till seed coat formation and divided into 8 different stages to determine stages of cotyledon development. Early cotyledonary stage of embryo was recorded on the 6 DAF, at this stage ‘Cot’ and ‘Cot E’ were inseparable and referred to as stage VI. ‘Cot’ and ‘Cot E’ could be distinguished from 9 DAF onwards. Two major events, endoreduplication of DNA and protein synthesis/accumulation that occur during the cotyledon development of grain-legumes, were analysed to probe the differential status, if any, in these two cotyledon types. The cell division phase of cotyledon development continues upto stage VII, while cell expansion phase starts at the stage VIII. The cotyledonary cells began to undergo the endoreduplicating cell cycle (ECC) from stage VII and continue until seed maturity. During the cell division phase the mitotic cycle and ECC occur simultaneously; whereas, only ECC continues in the cell expansion phase. Analysis of protein content indicated that ‘Cot E’ always contained comparatively higher amount during in vivo development than that of ‘Cot’. Similarity indices between ‘Cot’/’Cot E’ were 46.15%,82.35% and 90.9% at stage VII, stage VIII and at maturity, respectively, as computed from the presence oftotal polypeptides. The differential temporal pattern of DNA-endoreduplication and storage protein accumulation clearly dictates the influence of differential gene expression and regulation control in the developmental- type determination of the two cotyledons.     

Surveillance of vibriophages reveals their role as biomonitoring agents in Kolkata

Cholera is a public health threat in all developing countries. Kolkata, a city in eastern India, is an endemic zone for cholera. During the course of a comprehensive investigation on the distribution of phages of Vibrio cholerae O1 and O139 in freshwater bodies in Kolkata, we were able to isolate the phages of V. cholerae O1 and O139. Vibrio cholerae O1 phages were found at all the sites and exhibited a distinct seasonal cycle, with a primary peak (13.6–17.2 PFU mL⁻¹) during monsoon (June to August) in both 2006 and 2007. Vibrio cholerae O139 phages were present in the environment and were predominant during monsoon in the year 2006, except for late winter and early summer from February to April. In contrast, in the year 2007, the O139 phages could be isolated only during July to December, with the highest counts of 12.0 PFU mL⁻¹ determined in August. The multiplex PCR results showed that 90 samples were positive for wbe of V. cholerae O1, 32 samples for O139 ( wbf ) and 18 samples for both. This study shows that surveillance of vibriophages indicates the presence of V. cholerae O1 and O139 in water bodies in and around Kolkata and could therefore serve as a powerful biomonitoring agent.     

Conjugative Type 4 Secretion System of a Novel Large Plasmid from the Chemoautotroph Tetrathiobacter kashmirensis and Construction of Shuttle Vectors for Alcaligenaceae

Tetrathiobacter spp. and other members of the Alcaligenaceae are metabolically versatile and environmentally significant. A novel, ∼60-kb conjugative plasmid, pBTK445, from the sulfur chemolithoautotroph Tetrathiobacter kashmirensis, was identified and characterized. This plasmid exists at a low copy number of 2 to 3 per host chromosome. The portion of pBTK445 sequenced so far (∼25 kb) harbors genes putatively involved in replication, transfer functions, partition, and UV damage repair. A 1,373-bp region was identified as the minimal replicon. This region contains a repA gene encoding a protein belonging to the RPA (replication protein A) superfamily and an upstream, iteron-based oriV. A contiguous 11-gene cluster homologous to various type 4 secretion systems (T4SSs) was identified. Insertional inactivation demonstrated that this cluster is involved in the conjugative transfer functions of pBTK445, and thus, it was named the tagB (transfer-associated gene homologous to virB) locus. The core and peripheral TagB components show different phylogenetic affinities, suggesting that this system has evolved by assembling components from evolutionarily divergent T4SSs. A virD4 homolog, putatively involved in nucleoprotein transfer, is also present downstream of the tagB locus. Although pBTK445 resembles IncP plasmids in terms of its genomic organization and the presence of an IncP-specific trbM homolog, it also shows several unique features. Unlike that of IncP, the oriT of pBTK445 is located in close proximity to the oriV, and a traL homolog, which is generally present in the TraI locus of IncP, is present in pBTK445 in isolation, upstream of the tagB locus. A significant outcome of this study is the construction of conjugative shuttle vectors for Tetrathiobacter and related members of the Alkaligenaceae.The genus Tetrathiobacter includes environmentally important betaproteobacteria belonging to the family Alcaligenaceae. Members of this family inhabit diverse habitats, ranging from animals and humans to soil, sewage, and sludge. They are also metabolically diverse and include facultative chemolithotrophs, versatile heterotrophs, xenobiotic degraders, fastidious parasites, and pathogens (15). While the type species, Tetrathiobacter kashmirensis, isolated from a temperate orchard soil, has been recognized as a thiosulfate- and tetrathionate-oxidizing facultative chemolithoautotroph (11, 15), Tetrathiobacter mimigardefordensis, isolated from compost, can utilize the organic disulfide 3,3′-dithiodipropionic acid for growth (42). More recently isolated soil-dwelling strains of T. kashmirensis can detoxify selenite by reducing it to insoluble elemental red selenium (18). Strains identified as T. kashmirensis on the basis of 16S rRNA gene sequence similarity (GenBank accession number {"type":"entrez-nucleotide","attrs":{"text":"EU523111","term_id":"170674436","term_text":"EU523111"}}EU523111) are allegedly involved in the biodegradation of thiodiglycol, the hydrolysis product of yperite, a highly hazardous derivative of mustard gas used in chemical weapons. In addition, bacteria isolated from a deep-sea environment and phylogenetically identified as T. kashmirensis (GenBank accession number {"type":"entrez-nucleotide","attrs":{"text":"EF619402","term_id":"148751435","term_text":"EF619402"}}EF619402) have been observed to degrade alkanes.Species of Alcaligenaceae possess a wide repertoire of plasmids (21, 32), a feature pertinent to their biodegradative and biogeochemical roles in the environment. Many of these plasmids are well known for harboring genes involved in biodegradation (14, 39, 44). However, not many of them have been studied at the molecular level. In the present study, we have identified, partially sequenced, and characterized a large (∼60-kb), low-copy-number, self-transmissible, novel plasmid, designated pBTK445, from T. kashmirensis strain WGT. We have characterized the minimal replication region of this plasmid and have subsequently constructed shuttle vectors that could be used for diverse members of the Alcaligenaceae, including Tetrathiobacter. A major part of the sequenced region was found to be occupied by genes homologous to constituents of various type 4 secretion systems (T4SSs) (5-7, 9). This locus was found to be involved in the conjugal transfer function of the new plasmid. Many features of pBTK445 resemble those of IncP plasmids, but the new plasmid also possesses several characteristics distinct from those of IncP plasmids. We discuss in detail those characteristics of pBTK445 that make it an interesting model for the study of the diversity and evolution of large plasmids.     

Preservation of boar semen at 18 degrees C induces lipid peroxidation and apoptosis like changes in spermatozoa

Boar sperm functions, lipid peroxidation status, mitochondrial membrane potential (DeltaPsi(m)) and membrane permeability (apoptosis like features) were assessed during liquid preservation. Four ejaculates each from four Hampshire boars were extended with Beltsville Thawing Solution and preserved at 18 degrees C. At 0, 24, 48, 72 and 96 h of storage, each ejaculate was examined for sperm functions, lipid peroxidation, DeltaPsi(m), and membrane permeability. The lipid peroxidation status of the sperm was assessed based on the malonaldehyde (MDA) levels. Detection of DeltaPsi(m) was done using 3,3'-dihexyloxacarbocyanine iodide [DiOC(6)(3)]/propidium iodide (PI) assay and Yo-pro-1/PI assay was used to detect change in plasma membrane permeability. The sperm motility, viability and acrosomal integrity declined significantly (p<0.05) from 0 to 96 h of preservation. At the start of the preservation, the MDA levels (nM/10(9) sperm) were low in sperm (99.83+/-2.69) and seminal plasma (191.98+/-11.58), which gradually increased up to the 96 h of storage. Highest negative correlation (r value) was observed between MDA levels and sperm motility (-0.97), live percent (-0.97), acrosomal integrity (-0.97) and hypo-osmotic sperm swelling test (HOSST) positive sperm percentage (-0.98). Strong positive correlation was observed between HOSST positive sperm percentage and intact acrosome percentage (r=0.98). There was a significant (p<0.05) increase in the sperm cells with low DeltaPsi(m) from 0 to 96 h of preservation. Before preservation, 14.85+/-4.66% of sperm cells of the ejaculate showed low mitochondrial membrane potential, whereas after 96 h of preservation, this proposition of cells increased up to 32.00+/-6.25%. The apoptotic sperm population was 8.33+/-2.31% in fresh semen, while this population was 25.19+/-4.25% at 96 h of preservation and the difference was significant (p<0.05). The findings of the present study revealed that liquid preservation of boar semen at 18 degrees C induces lipid peroxidation, decrease mitochondrial membrane potential and increase the plasma membrane permeability.     

Mechanical unfolding pathway and origin of mechanical stability of proteins of ubiquitin family: An investigation by steered molecular dynamics simulation

Like the muscle protein Titin, proteins of the ubiquitin family exhibit a parallel strand arrangement, but otherwise having a distinctly different fold and not involved in an obvious load‐bearing function, exhibit high resistance to mechanical unfolding. We have applied all‐atom molecular dynamics simulation technique in implicit solvent to present a deep insight into the force‐induced unfolding pathway of three proteins—ubiquitin, NEDD8, and SUMO‐2—all having almost similar structural features. Two intermediates evolve in the unfolding pathway of each of the three proteins. The first intermediate, which has already been identified in case of ubiquitin by earlier simulation results, is similar for ubiquitin and NEDD8, but different in SUMO‐2. We have found a new intermediate with β3–β4 hairpin and some residual α‐helical character; and this intermediate is common for all the three proteins. Thus, proteins of the ubiquitin family pass through a well‐defined conformation in their force‐induced unfolding pathway. Reason behind the higher mechanical stability of the proteins with parallel strand structures like Titin has also been identified. Proteins 2009. © 2008 Wiley‐Liss, Inc.     

Stringent response in Vibrio cholerae: genetic analysis of spoT gene function and identification of a novel (p)ppGpp synthetase gene

RelA and SpoT of Gram-negative organisms critically regulate cellular levels of (p)ppGpp. Here, we have dissected the spoT gene function of the cholera pathogen Vibrio cholerae by extensive genetic analysis. Unlike Escherichia coli , V. cholerae Δ relA Δ spoT cells accumulated (p)ppGpp upon fatty acid or glucose starvation. The result strongly suggests RelA-SpoT-independent (p)ppGpp synthesis in V. cholerae . By repeated subculturing of a V. cholerae Δ relA Δ spoT mutant, a suppressor strain with (p)ppGpp⁰ phenotype was isolated. Bioinformatics analysis of V. cholerae whole genome sequence allowed identification of a hypothetical gene ( VC1224 ), which codes for a small protein (∼29 kDa) with a (p)ppGpp synthetase domain and the gene is highly conserved in vibrios; hence it has been named relV . Using E. coli Δ relA or Δ relA Δ spoT mutant we showed that relV indeed codes for a novel (p)ppGpp synthetase. Further analysis indicated that relV gene of the suppressor strain carries a point mutation at nucleotide position 676 of its coding region (Δ relA Δ spoT relV676 ), which seems to be responsible for the (p)ppGpp⁰ phenotype. Analysis of a V. cholerae Δ relA Δ spoT Δ relV triple mutant confirmed that apart from canonical relA and spoT genes, relV is a novel gene in V. cholerae responsible for (p)ppGpp synthesis.     

Novel role of Wag31 in protection of mycobacteria under oxidative stress

Wag31 of Mycobacterium tuberculosis belongs to the DivIVA family of proteins known to regulate cell morphology in Gram-positive bacteria. Here we demonstrate an unrecognized, novel role of Wag31 in oxidatively stressed mycobacteria. We report the cleavage of penicillin-binding protein 3 (PBP3) by the intramembrane metalloprotease Rv2869c (MSMEG_2579) in oxidatively stressed cells. Amino acids ¹⁰²A and ¹⁰³A of PBP3 are required for Rv2869c-mediated cleavage. Wag31_MTB, by virtue of its interaction with PBP3 through amino acid residues ⁴⁶NSD⁴⁸, protects it from oxidative stress-induced cleavage. PBP3 undergoes cleavage in Mycobacterium smegmatis (strain PM2) harbouring wag31 (Δ⁴⁶NSD⁴⁸) instead of the wild type, with concomitant reduction in ability to withstand oxidative stress. Overexpression of Wag31(Δ⁴⁶NSD⁴⁸) attenuates the survival of M. tuberculosis in macrophages with concomitant cleavage of PBP3, and renders the organism more susceptible towards hydrogen peroxide as well as drugs which generate reactive oxygen species, namely isoniazid and ofloxacin. We propose that targeting Wag31 could enhance the activity of mycobactericidal drugs which are known to generate reactive oxygen species.     

Biosurfactant of marine origin exhibiting heavy metal remediation properties

The present study was aimed at elucidating the role of biosurfactant product isolated from a marine bacterium in removing heavy metals from heavy metal containing solutions. In this study, metal removal was biosurfactant-mediated. Efficiency of metal removal depended on the concentration of the metal as well as that of the biosurfactant. At a concentration 5×, the critical micelle concentration (CMC), almost complete removal of 100 ppm of lead and cadmium occurred. Atomic absorption spectroscopy (AAS) studies also showed metal removal at a concentration less than the CMC in contrast to earlier findings that only micelles are involved in metal removal. Fourier transform infrared spectroscopy (FTIR) and transmission electron microscopy (TEM) equipped with energy dispersive X-ray spectroscopy (EDS) further substantiated these findings.