MetaTM - a consensus method for transmembrane protein topology prediction

Background  

Transmembrane (TM) proteins are proteins that span a biological membrane one or more times. As their 3-D structures are hard to determine, experiments focus on identifying their topology (i. e. which parts of the amino acid sequence are buried in the membrane and which are located on either side of the membrane), but only a few topologies are known. Consequently, various computational TM topology predictors have been developed, but their accuracies are far from perfect. The prediction quality can be improved by applying a consensus approach, which combines results of several predictors to yield a more reliable result.     

Cloning and characterization of 29 tetranucleotide and two dinucleotide polymorphic microsatellite loci from the endangered marbled murrelet (Brachyramphus marmoratus)

We developed 31 novel, polymorphic microsatellite loci in the marbled murrelet (Brachyramphus marmoratus), a critically endangered seabird. Variability was tested on 15 individuals from the Santa Cruz, California population, with each locus characterized by two to 12 alleles. Observed levels of heterozygosity ranged from 0.13 to 0.93. These loci provide a valuable means of assessing the population structure and demographic parameters of this species, which may be critical to its conservation across a fragmented habitat.     

PRESENCE AND DIVERSITY OF ALGAL TOXINS IN SUBTROPICAL PEATLAND PERIPHYTON: THE FLORIDA EVERGLADES,USA1

Production of toxic secondary metabolites by cyanobacteria, collectively referred to as cyanotoxins, has been well described for eutrophied water bodies around the world. However, cohesive cyanobacterial mats also comprise a significant amount of biomass in subtropical oligotrophic wetlands. As these habitats generally do not support much secondary production, cyanotoxins, coupled with other physiological attributes of cyanobacteria, may be contributing to the minimized consumer biomass. Periphyton from the Florida Everglades has a diverse and abundant cyanobacterial assemblage whose species produce toxic metabolites; therefore, by screening periphyton representative of the greater Everglades ecosystem, six different cyanotoxins and one toxin (domoic acid) produced by diatoms were identified, ranging in content from 3 × 10^?9 to 1.3 × 10^?6 (g · g^?1), with saxitoxin, microcystin, and anatoxin‐a being the most common. While content of toxins were generally low, when coupled with the tremendous periphyton biomass (3–3,000 g · m^?2), a significant amount of cyanotoxins may be present. While the direct effects of the toxins identified here on the local grazing community need to be determined, the screening process utilized proved effective in showing the broad potential of periphyton to produce a variety of toxins.