Genomics and embryology in amphibians

A report on the Eighth Biannual Xenopus Conference, Estes Park, Colorado, August 16-20, 2000.     

Oral toxicity and impact on fecundity of three insecticidal proteins on the gregarious ectoparasitoid Eulophus pennicornis (Hymenoptera: Eulophidae)

Abstract 1 The effects of three insecticidal transgene proteins on selected life parameters of the ectoparasitoid Eulophus pennicornis were investigated. 2 When incorporated into the diet of the adult wasp, the lectins GNA (snowdrop lectin) and Con A (jackbean lectin) significantly reduced longevity at doses of 0.1% w/v and above. At a dose rate of 0.1% w/v, GNA and Con A reduced mean longevity to approximately 13 and 10 days, respectively, compared with average control lifespans of approximately 20 days. The trypsin inhibitor from cowpeas, CpTI, had no marked effect on longevity. 3 Both lectins reduced reproductive fitness of parasitoids when dosed before exposure to hosts. The 1.0% dose reduced fecundity by over 35% for GNA and 70% for Con A. Although reduced fecundity may have been a function of shorter lifespans, smaller egg loads in female wasps provided evidence to suggest that higher lectin doses may have interfered with egg maturation processes. 4 Both lectins were readily detected in whole body extracts of the parasitoid and were seen to persist within their bodies for at least 24 h after cessation of feeding on lectin‐containing diets. 5 The results would indicate that the ingestion of the lectins, either through host feeding or through the consumption of nectar, may pose a hazard to parasitic wasps if present at sufficiently high concentrations.     

Effect of microsporidian infection in Lacanobia oleracea (Lep., Noctuidae) on prey selection and consumption by the spined soldier bug Podisus maculiventris (Het., Pentatomidae)

Abstract:  The predatory behaviour of Podisus maculiventris was investigated when this bug was presented with Lacanobia oleracea larvae infected with the microsporidian pathogen Vairimorpha necatrix . In choice tests, adult predatory bugs attacked V. necatrix -infected L. oleracea prey in similar numbers to uninfected larvae. Exposure to infected prey during nymphal development increased the rate at which adult bugs attacked diseased L. oleracea larvae. Fifth instar P. maculiventris nymphs, however, attacked infected prey in the majority of cases (>80% of occasions). Consumption of healthy and infected prey was measured for both adult and nymphal bugs. Over the course of 1 week, the mean number of V. necatrix -infected prey eaten by P. maculiventris adults (7.0 ± 0.82) was approximately twice the number of uninfected prey consumed (3.8 ± 0.42). Similarly, the number of prey larvae attacked by the bug over the course of the final nymphal stadium was also increased, with 2.9 ± 0.42 uninfected larvae eaten as opposed to 4.9 ± 0.27 V. necatrix -infected prey. However, small-scale investigations into the rate of P. maculiventris reduced small populations of L. oleracea indicated that the combination of the predator and pathogen would produce, at best, an additive effect.     

Multicellular group formation in response to predators in the alga Chlorella vulgaris

A key step in the evolution of multicellular organisms is the formation of cooperative multicellular groups. It has been suggested that predation pressure may promote multicellular group formation in some algae and bacteria, with cells forming groups to lower their chance of being eaten. We use the green alga Chlorella vulgaris and the protist Tetrahymena thermophila to test whether predation pressure can initiate the formation of colonies. We found that: (1) either predators or just predator exoproducts promote colony formation; (2) higher predator densities cause more colonies to form; and (3) colony formation in this system is facultative, with populations returning to being unicellular when the predation pressure is removed. These results provide empirical support for the hypothesis that predation pressure promotes multicellular group formation. The speed of the reversion of populations to unicellularity suggests that this response is due to phenotypic plasticity and not evolutionary change.     

Dealing with uncertainty in landscape genetic resistance models: a case of three co‐occurring marsupials

Landscape genetics lacks explicit methods for dealing with the uncertainty in landscape resistance estimation, which is particularly problematic when sample sizes of individuals are small. Unless uncertainty can be quantified, valuable but small data sets may be rendered unusable for conservation purposes. We offer a method to quantify uncertainty in landscape resistance estimates using multimodel inference as an improvement over single model‐based inference. We illustrate the approach empirically using co‐occurring, woodland‐preferring Australian marsupials within a common study area: two arboreal gliders (Petaurus breviceps, and Petaurus norfolcensis) and one ground‐dwelling antechinus (Antechinus flavipes). First, we use maximum‐likelihood and a bootstrap procedure to identify the best‐supported isolation‐by‐resistance model out of 56 models defined by linear and non‐linear resistance functions. We then quantify uncertainty in resistance estimates by examining parameter selection probabilities from the bootstrapped data. The selection probabilities provide estimates of uncertainty in the parameters that drive the relationships between landscape features and resistance. We then validate our method for quantifying uncertainty using simulated genetic and landscape data showing that for most parameter combinations it provides sensible estimates of uncertainty. We conclude that small data sets can be informative in landscape genetic analyses provided uncertainty can be explicitly quantified. Being explicit about uncertainty in landscape genetic models will make results more interpretable and useful for conservation decision‐making, where dealing with uncertainty is critical.     

Restoring habitat and cultural practice in Australia’s oldest and largest traditional aquaculture system

Lake Condah (Tae Rak) in south-western Victoria, Australia, is one of the world’s most ancient examples of traditional aquaculture, consisting of complex systems of traps and ponds used by Gunditjmara (Indigenous people) over millennia to collect short-finned eel (Anguilla australis) for consumption and trade. Artificial draining of the lake during the nineteenth century reduced surface water retention in the landscape and rendered most of the eel traps inoperable. In this paper, we describe the traditional eel fishery at Lake Condah and its historical and cultural significance to the Gunditjmara people. We document the impacts of European settlement on the traditional eel fishery, and describe the processes and events leading to eventual restoration of the lake and subsequent reactivation of major parts of the traditional aquaculture system. In addition to restoring an important ecological asset to the region, the restoration project provided significant benefits to the Gunditjmara people, including enhanced connection to country and culture, opportunities for economic development and employment, and increased capacity for traditional owners to progress and negotiate outcomes within regulatory and administrative frameworks. Aspects identified as critical to the ultimate success of the Lake Condah restoration project include: open and transparent lines of communication with stakeholders; building of trust and confidence with key individuals over sustained periods; use of strategic and business planning documents to guide activities; commissioning of high quality technical information to support and justify activities; representative leadership structures, and effective use of ‘two-way learning’ across western scientific and indigenous knowledge systems.     

Decolonizing conviviality and ‘becoming ordinary’: cross-cultural face-to-face encounters in Aotearoa New Zealand

This paper explores convivial culture in a settler society. The paper draws on interview data from ethnographic research exploring how Māori and Pākehā worked together on a building project in a rural community. Both Māori and Pākehā participants reported their pleasure in engagements with each other that centred on Māori tikanga (protocols). In these encounters, Māori ‘difference’ was the catalyst for the development of new, convivial relationships. The paper argues that such everyday conviviality contributes to the process of decolonizing Māori–Pākehā relations at the level of everyday life. Through decolonizing conviviality Pakehā ‘become ordinary’ in Māori cultural contexts, and are offered the opportunity to come to understand themselves as embedded in colonial relationalities. Crucial to the development of such conviviality is the opportunity for face-to-face, embodied encounters with Māori in contexts where Māori cultural difference matters.     

Modelling semantic transparency

We present models of semantic transparency in which the perceived transparency of English noun–noun compounds, and of their constituent words, is predicted on the basis of the expectedness of their semantic structure. We show that such compounds are perceived as more transparent when the first noun is more frequent, hence more expected, in the language generally; when the compound semantic relation is more frequent, hence more expected, in association with the first noun; and when the second noun is more productive, hence more expected, as the second element of a noun–noun compound. Taken together, our models of compound and constituent transparency lead us to two conclusions. Firstly, although compound transparency is a function of the transparencies of the constituents, the two constituents differ in the nature of their contribution. Secondly, since all the significant predictors in our models of compound transparency are also known predictors of processing speed, perceived transparency may itself be a reflex of ease of processing.     

Epigenetic Signatures at AQP3 and SOCS3 Engage in Low-Grade Inflammation across Different Tissues

BackgroundElevated levels of C-reactive protein (CRP, determined by a high-sensitivity assay) indicate low-grade inflammation which is implicated in many age-related disorders. Epigenetic studies on CRP might discover molecular mechanisms underlying CRP regulation. We aimed to identify DNA methylation sites related to CRP concentrations in cells and tissues regulating low-grade inflammation.ResultsGenome-wide DNA methylation was measured in peripheral blood in 1,741 participants of the KORA F4 study using Illumina HumanMethylation450 BeadChip arrays. Four CpG sites (located at BCL3, AQP3, SOCS3, and cg19821297 intergenic at chromosome 19p13.2, P ≤ 1.01E-07) were significantly hypomethylated at high CRP concentrations independent of various confounders including age, sex, BMI, smoking, and white blood cell composition. Findings were not sex-specific. CRP-related top genes were enriched in JAK/STAT pathways (Benjamini-Hochberg corrected P < 0.05). Results were followed-up in three studies using DNA from peripheral blood (EPICOR, n = 503) and adipose tissue (TwinsUK, n = 368) measured as described above and from liver tissue (LMU liver cohort, n = 286) measured by MALDI-TOF mass spectrometry using EpiTYPER. CpG sites at the AQP3 locus (significant p-values in peripheral blood = 1.72E-03 and liver tissue = 1.51E-03) and the SOCS3 locus (p-values in liver < 2.82E-05) were associated with CRP in the validation panels.ConclusionsEpigenetic modifications seem to engage in low-grade inflammation, possibly via JAK/STAT mediated pathways. Results suggest a shared relevance across different tissues at the AQP3 locus and highlight a role of DNA methylation for CRP regulation at the SOCS3 locus.