Formation of spatial structure of RNA molecules

In this review we consider several experimental and theoretical approaches for investigation of RNA folding and determination of nucleotides that play an important role upon folding of such molecules as tRNA and several classes of ribozymes. It has been shown that nucleotides in the D- and T-loop regions are the last to be involved in tRNA structure or they are not included in the folding nucleus of tRNA. Using the specially elaborated method SHAPE it has been demonstrated that the model of hierarchical folding which was recognized for a long time is not correct for tRNA folding. In the second part of the given review the algorithms and programs used for the prediction of secondary structures of RNA as well as for modeling of RNA folding are considered.     

Influence of Electroporation Conditions on Transfection of Muscle Fibers in Vivo

This study is a survey of in vivo experiments on transfection of laboratory mouse muscle fibers by electoporation using an original device generating electric impulses. Transfection efficiency proved to depend on DNA dose and the number of electric impulses. It can be increased significantly by electroporation at varying pulse burst polarity. At both direct electrode application to muscles and electroporation through the skin, the muscle fiber transfection was more efficient under electroporation conditions much milder than those usually reported. The use of electroporation method for gene therapy of Duchenne muscular dystrophy is discussed.     

Molecular Genetic Analysis of Y-Chromosome Microdeletions in Men with Severe Spermatogenetic Defects

Microdeletions of the Y-chromosomal AZF loci were revealed in 10 (12%) of 82 patients with severe idiopathic spermatogenetic defects. Deletions involved AZFc in six patients, AZFa in one patient, AZFb+c in two patients, and AZFa+b+c in one patient. Microdeletion analysis employed multiplex PCR with 22 pairs of primers directed to Y-specific STS of deletion intervals 5, 6, and 7 (Yq11). Spermatogenesis in men with AZF microdeletions was assessed with semen analysis, microscopic examination of testicular aspirate, and quantitative karyotypic analysis of immature germline cells in ejaculate or aspirate. The character of spermatogenetic defects was correlated with the size and location of microdeletions in order to study the genotype–phenotype relationship.     

Low-current moderate-pressure RF discharge with secondary electron photoemission

A model is proposed for a low-current RF discharge with secondary electron photoemission from the electrode surface caused by photons originating in the electrode sheath. The low-current state of RF discharges at moderate pressures is peculiar in that the electrons and ions produced during the preceding periods of the RF field promote the development of the discharge during subsequent periods. Since the ion space charge is induced during many periods of the RF field, even comparatively moderate fields in the electrode sheath are sufficient to ensure the conditions under which the current is self-sustaining, in which case the electron photoemission dominates over the remaining secondary processes at the electrode surface. In a low-current RF discharge, the ion-electron emission has essentially no impact on the formation of the electrode sheath because the half-period of the RF field is much shorter than the ion transit time through the sheath. The sheath results from the overlap of the secondary electron avalanches triggered by electron photoemission from the electrode surface. The sheath parameters are determined by the conditions under which the current in the sheath is selfsustaining due to the secondary electron photoemission from the electrode surface. The capacitive susceptance of the electrode sheath is substantially higher than its electrical conductance. Low-current RF discharges can only exist when the time required for the ions to drift through the sheath and reach the electrode is much longer than the half-period of the RF field.     

The Current State and Prospects of the Gene Therapy of Duchenne Muscular Dystrophy Worldwide and in Russia

Failure of drug therapy of Duchenne muscular dystrophy (DMD) stimulated intense search for adequate methods of gene therapy (GT) which would ensure effective delivery of the dystrophin (D) gene, its long-term persistence in transfected cells, and its expression in muscle fibers. The main results of the experimental GT of DMD with the use of viral and nonviral delivery of the D gene into muscles of biological models are discussed. Delivery of a mini-gene of D with a specific muscle promoter using a modified adenoassociated virus is currently the most promising method, which will soon be available for clinical trials. The main results of the studies on the DMD GT in Russia are summarized. The results of experiments on genetic transfection of mdx mice with marker genes and various constructions with the D gene are outlined. The genes are delivered into muscles by means of gene gun, electroporation, viral oligopeptides, liposomes, microspheres, lactoferine, and other nonviral vehicles. It is emphasized that consolidation of funds and efforts of all Russian laboratories dealing with gene and cell therapy of DMD are necessary to complete the experiments and start clinical trials.     

Population and Family Studies of the CAG Repeats in the IT-15Gene

A simple and effective method for typing of CAG repeats in the IT-15gene has been suggested. This method was applied for examination of the CAG allele distribution in Huntington's disease (HD) patients in five different populations from the Commonwealth of Independent States. A total of 21 normal alleles with the sizes ranging from 9 to 32 triplet repeats units were revealed. Moreover, alleles with the sizes ranging from 16 to 20 repeats predominated constituting from 54.4 to 74.6% of all alleles in different populations. The number of repeats in one allele in HD patients exceeded 38 units (43 triplets on average). In two families an increase in the CAG repeat units number in the mutant allele upon its paternal transmission was recorded.     

Fast direct method of obtaining metaphase and prometaphase chromosomes from chorion biopsy cells and human embryos during the lst semester of pregnancy]

Samples of chorionic villi and embryonic tissues (brain, brain--sheaths) are thoroughly washed with Hank's solution, immediately subjected to hypotonic treatment (0.9% sodium citrate plus few drops of 0.01% colchicine) 37 degrees C, 30 min, prefixed 20 min with equal amount of standard fixative mixture, twice fixed in standard fixative solution (1 hour, -10 degrees C), hydrated with equal volume of distilled water (5-10 min), dried, macerated directly on the slide with 60% acetic acid. The cell suspension is then evenly spread on the slide surface, dried, postfixed and stained. The method provides sufficient amount of metaphase and prometaphase mitotic plates suitable for differentiating staining in 1.5-2 hours after sampling and might be recommended for routine chromosomal analysis in prenatal diagnosis of inherited diseases during early pregnancy.     

New Atrypids (Brachiopoda) from the Lower Devonian of Northeast Russia

New atrypids are described from the Lower Devonian of Northeast Russia: Musalitinispira, gen. nov. with type species M. dogdensis, sp. nov. (subfamily Atrypinae), Spinatrypina (Spinatrypina) krivensis, sp. nov., and Datnella, gen. nov. with type species D. datnensis (Baranov, 1995) (subfamily Spinatrypinae).     

The Role of C2-Substituents in the Imidazolone Ring in the Degradation of GFP Chromophore Derivatives

The role of C2-substituents in the imidazolone ring of borated GFP chromophore derivatives (4-(2-(difluoroboryl)benzylidene)-1H-imidazol-5(4H)-ones) in the degradation process was studied. It was found that the nature of this substituent hardly affected their photostability, whereas their sensitivity toward nucleophilic reagents decreased with an increase in size and donating properties of the substituent. The results supported an assumption that the introduction of C2 substituents was not a rate-limiting step of the degradation process of these derivatives and complex C2 substituents were not effective tools for the improvement of their stability.