Net changes of soil C stocks in two grassland soils 26 months after simulated pasture renovation including biochar addition

The use of deep‐rooting pasture species as a management practice can increase the allocation of plant carbon (C) below ground and enhance C storage. A 2‐year lysimeter trial was set up to compare changes in C stocks of soils under either deep‐ or shallow‐rooting pastures and investigate whether biochar addition below the top 10 cm could promote root growth at depth. For this i) soil ploughing at cultivation was simulated in a silt loam soil and in a sandy soil by inverting the 0 to 10 and 10‐ to 20‐cm‐depth soil layers, and a distinctive biochar (selected for each soil to overcome soil‐specific plant growth limitations) was mixed at 10 Mg ha^?1 in the buried layer, where appropriate and ii) three pasture types with contrasting root systems were grown. In the silt loam, soil inversion resulted in a general loss of C (2.0–8.1 Mg ha^?1), particularly in the buried horizon, under shallow‐rooting pastures only. The addition of a C‐rich biochar (equivalent to 7.6 Mg C ha^?1) to this soil resulted in a net C gain (21–40% over the non‐biochar treatment, P < 0.10) in the buried layer under all pastures; this overcame the loss of C in this horizon under shallow‐rooting pastures. In the sandy soil, all pastures were able to maintain soil C stocks at 10–20 cm depth over time, with minor gains of C (1.6–5.1 Mg ha^?1) for the profile. In this soil, the exposure of a skeletal‐ and nutrient‐depleted soil layer at the surface may have fostered root growth at depth. The addition of a nutrient‐rich biochar (equivalent to 3.6 Mg C ha^?1) to this soil had no apparent effect on C stocks. More research is needed to understand the mechanisms through which soil C stocks at depth are preserved.     

Party size and early detection of predators in sumatran forest primates

Theoretical considerations suggest that the ability to detect the presence or approach of a predator when there is still enough time to flee (early detection) should improve with group size, if group living is to be advantageous for individual non-human primates. The hypothesis that the distance at which forest primates detect predators increases with the size of their party was confirmed by observation. It was found that in addition to party size height (vegetation density) could also influence detection distance. Because height relates not only to visibility but also to the number of potential predators, one would predict that small parties are found higher in the canopy to compensate for the increased risk of predation. This prediction was confirmed using data on long-tailed macaques (Macaca fascicularis). The correlation found between party size and predation risk demonstrates that forest monkeys can adjust their behaviour in response to changes in predation risk, and hence support the hypothesis that predation risk has been an important, perhaps even the only, selective force responsible for the evolution of group living in non-human primates.     

Neglected seed dispersers: endozoochory by Javan lutungs (Trachypithecus auratus) in Indonesia

Leaf monkeys are known to be leaf eaters, and thus, their potential role as seed dispersers has been neglected. However, they do also feed on fruits. To examine the role of leaf monkeys as endozoochorous seed dispersers, we studied the Javan lutung (Trachypithecus auratus) in Indonesia. We compared multiple aspects of seed dispersal processes (amount and diversity of seeds ingested, dispersal distance, and germination rate) of lutungs with that of the sympatric long‐tailed macaque (Macaca fascicularis). Over the study period, 54 percent of the lutung feces contained intact seeds, which was equivalent to the macaque feces contained seeds (62%). Seeds of at least six plant species were detected in the lutung feces, which was less than those found in the macaque feces (>19 plant species). The main species of seeds defecated by both lutungs and macaques was Ficus spp. (seed size: 0.7 mm). Seed shadow, estimated from travel distance (range: 1–299 m) and gut passage rate (24–96 h), had a unimodal‐distribution with a peak at 51–100 m, and was shorter than that reported in published accounts of macaques and other similar and smaller sized frugivores. Finally, germination rates of Ficus spp. seeds ingested by both lutungs and macaques were lower than that of the control seeds. These results imply that the dispersal effectiveness of lutungs would be lower than that of the sympatric primate frugivores. However, at a population level, lutungs could play a significant role as seed dispersers for the small‐seeded species, and therefore, more research into their frugivorous habits is warranted.     

Identification and characterization of a gene encoding drought-inducible protein localizing in the bundle sheath cell of sugarcane

We have identified a drought-inducible gene, designated as SoDip22, in sugarcane leaves. The cDNA encoded a hydrophilic protein with a calculated molecular mass of 15.9 kDa and the amino acid sequence was similar to that of ABA, stress and ripening-inducible protein from various plant species. ABA or mannitol-treatment of the detached leaves also induced SoDip22 expression. Stepwise homogenization of the stressed leaves showed that SoDip22 is localized in bundle sheath cells. These results suggest that SoDip22 functions to adapt to drought stress in the bundle sheath cell, and that the signaling pathway for the induction is, at least in a part, mediated by ABA.     

<Emphasis Type="Italic">Adrianichthys roseni</Emphasis> and <Emphasis Type="Italic">Oryzias nebulosus</Emphasis>, two new ricefishes (Atherinomorpha: Beloniformes: Adrianichthyidae) from Lake Poso,Sulawesi, Indonesia

Two new species of ricefishes or buntingi, Adrianichthys roseni and Oryzias nebulosus, are described from Lake Poso, Sulawesi Tengah, Indonesia, bringing to 12 the number of endemic ricefishes known from Sulawesi. Adrianichthys roseni and its sole congener, A. kruyti, are distinguished from other relatively large-bodied ricefishes, Xenopoecilus, in having orbits that project beyond the dorsal profile of the head; paired preethmoid cartilages (versus single or absent in Xenopoecilus); and 13–16 (versus 8–13) dorsal fin rays. Also, as in A. kruyti, the lower jaw of A. roseni is enclosed in the upper jaw when the mouth is closed; however, the upper jaw is not as large and broadly expanded as in A. kruyti. Adrianichthys roseni differs further from A. kruyti in having fewer scales in a lateral series (approximately 63–65 versus 70–75), attaining a smaller maximum recorded standard length (90mm versus 109mm), and having the lateral process of the pelvic bone in line with the fifth, rather than the eighth, pleural rib. Oryzias nebulosus shares with O. nigrimas, also from Lake Poso, a unique sexual dichromatism in preserved specimens: adult males are dark gray to black, whereas females are a lighter grayish-yellow to brown. Relative to O. nigrimas, O. nebulosus is a small species (maximum recorded SL 33mm versus 51mm), with pelvic fins relatively anterior (lateral process of pelvic bone is in line with the third, fourth, or fifth, modally fourth, rather than the fourth or fifth, modally fifth, pleural rib), dorsal fin relatively anterior (origin above the 12–14th anal fin ray as opposed to the 15–17th anal fin ray), precaudal vertebrae 11–13, modally 12 (versus 13–14, modally 13), and relatively straight, narrow and slender (as opposed to curved, broad, and robust) ossified and cartilaginous portions of the gill arches. Endemic buntingi are threatened by introduction of exotic species, overfishing, and pollution. A conservation plan includes rearing native fishes for local use as ornamental fishes and possible reintroduction.     

A viral dynamic model for treatment regimens with direct-acting antivirals for chronic hepatitis C infection

We propose an integrative, mechanistic model that integrates in vitro virology data, pharmacokinetics, and viral response to a combination regimen of a direct-acting antiviral (telaprevir, an HCV NS3-4A protease inhibitor) and peginterferon alfa-2a/ribavirin (PR) in patients with genotype 1 chronic hepatitis C (CHC). This model, which was parameterized with on-treatment data from early phase clinical studies in treatment-naïve patients, prospectively predicted sustained virologic response (SVR) rates that were comparable to observed rates in subsequent clinical trials of regimens with different treatment durations in treatment-naïve and treatment-experienced populations. The model explains the clinically-observed responses, taking into account the IC50, fitness, and prevalence prior to treatment of viral resistant variants and patient diversity in treatment responses, which result in different eradication times of each variant. The proposed model provides a framework to optimize treatment strategies and to integrate multifaceted mechanistic information and give insight into novel CHC treatments that include direct-acting antiviral agents.     

Human-Specific SNP in Obesity Genes, Adrenergic Receptor Beta2 (ADRB2), Beta3 (ADRB3), and PPAR γ2 (PPARG), during Primate Evolution

Adrenergic-receptor beta2 (ADRB2) and beta3 (ADRB3) are obesity genes that play a key role in the regulation of energy balance by increasing lipolysis and thermogenesis. The Glu27 allele in ADRB2 and the Arg64 allele in ADRB3 are associated with abdominal obesity and early onset of non-insulin-dependent diabetes mellitus (NIDDM) in many ethnic groups. Peroxisome proliferator-activated receptor γ (PPARG) is required for adipocyte differentiation. Pro12Ala mutation decreases PPARG activity and resistance to NIDDM. In humans, energy-expense alleles, Gln27 in ADRB2 and Trp64 in ADRB3, are at higher frequencies than Glu27 and Arg64, respectively, but Ala12 in PPARG is at lower frequency than Pro12. Adaptation of humans for lipolysis, thermogenesis, and reduction of fat accumulation could be considered by examining which alleles in these genes are dominant in non-human primates (NHP). All NHP (P. troglodytes, G. gorilla, P. pygmaeus, H. agilis and macaques) had energy-thrifty alleles, Gly16 and Glu27 in ADRB2, and Arg64 in ADRB3, but did not have energy-expense alleles, Arg16, Gln27 and Trp64 alleles. In PPARG gene, all NHP had large adipocyte accumulating type, the Pro12 allele. CONCLUSIONS: These results indicate that a tendency to produce much more heat through the energy-expense alleles developed only in humans, who left tropical rainforests for savanna and developed new features in their heat-regulation systems, such as reduction of body hair and increased evaporation of water, and might have helped the protection of entrails from cold at night, especially in glacial periods.     

Permeable Boundaries: Outsiders and Access to Fishing Grounds in the Berau Marine Protected Area

The designation of Marine Protected Areas (MPAs) in Indonesia has been accelerated over the past two decades in line with international biodiversity conservation commitments and to secure a basis for decentralised fisheries resources management. The Berau MPA of northeast Kalimantan is one of them. This paper shows how the establishment of the park boundaries and zoning affects local fishers' livelihoods. Particular attention is paid to the position of outsider fishers or andon, who have a legal right to access the resource rich fishing grounds. Decentralised district government legitimises outsider fisheries activities because andon fishing permits bring in fees as a contribution to the regional income (PAD or pendapatan asli daerah), while international environmental organisations and local fishers regard the outsider fishers as illegitimately entering the MPA to access resources they regard as their own. Thus, MPA boundaries appear to be highly permeable, with both local fishers and environmental NGOs seeing the presence of andon as illegitimate and illicit, despite being legal.     

Shaping the social and welfare security in Indonesia through implementing macro-ergonomics

Ergonomics as a scientific method was familiar in industrial regimes. Its trajectories have rapidly grown up to multiple dimensions in which the socio-technical aspects are inherent. Since ergonomics has promoted a new perspective in view of the relationships among the man-machine-systems, it has brought the remarkable progress compared with mono-spectrum in a mechanistic perspective. In the case of Indonesia, the functioning of ergonomics is urgent as the national productivity level is still less optimal. Since Indonesia has no established policies in societal life quality empowerment, it is important to overcome the insecurity on social welfare for securing sustainability. Since the ergonomics philosophy has promoted a humanity perspective in the country, it is necessary to use it as a means of enhancing productivity in order to achieve societal prosperity. Nevertheless, shaping the social prosperity by counting on ergonomics is insufficient, the development of policies and strategic plans should be addressed by identifying existing mapping of the roles of stakeholders in multiple perspectives. This paper is focused on describing ergonomics-based foresight and its prospectus for shaping the social and welfare security in Indonesia by analyzing its roles in social development.