Spatial and temporal variations and assemblage structure of fish species in Beymelek Lagoon,Turkey

Spatial and temporal variations and assemblage structure of fish species were investigated in Beymelek Lagoon, on the south‐western Mediterranean coast of Turkey. A total of 3956 fish, mainly juveniles, from 24 species representing 11 families were sampled by gillnets and trammel nets from February 2006 to January 2007. Twelve of the species were marine straddlers, 11 were marine‐estuarine‐dependent and one was catadromous. Numerical contribution of marine‐estuarine‐dependent species to the total fish abundance was 86.2%, while marine straddlers contributed only 13.8%. Despite the higher number of species, the numerical abundance of marine straddlers was lower than the abundance of marine‐estuarine‐dependent species. The contribution of catadromous species by number was only 0.02%. The assemblage was taxonomically dominated by Sparidae (seven species, 51.3%), Mugilidae (five species, 36.0%), and Clupeidae (one species, 10.3%). Among sparids, Sparus aurata, Diplodus sargus and Lithognathus mormyrus contributed 38.0, 7.2 and 4.6% to the total catch, respectively. The most abundant mugilid species was Liza saliens with 25.2%, followed by Chelon labrosus 5.2%, and Liza aurata 4.0%. Contribution by the other mugilid species to total catch was quite low. The Clupeidae (10.3%) were represented by Sardinella maderensis with 9.1% of the total catch. While the upper reaches of Beymelek Lagoon were dominated by Sparus aurata and Liza saliens, dominant in the lower reaches were Sardinella maderensis, Sparus aurata, Diplodus sargus, Lithognathus mormyrus and Liza saliens. Sparids were generally caught from mid‐summer to mid‐winter while mugilids were caught throughout the year. Clupeids occurred mainly from autumn to spring.     

Karyotypic analysis of two algae species Scenedesmus incrassatulus Bohl and Scenedesmus antennatus Bréb (Chlorophyta, Chlorococcales)

The karyotypes (number, morphology and size of the chromosomes) of two algae species of Scenedesmus genus, S. incrassatulus and S. antennatus, were studied. The karyotype of S. incrassatulus (n=4) was asymmetric, characterized by two large metacentric, one large submetacentric and one small metacentric chromosomes. The karyotype assembly of S. antennatus (n=6) reveals two metacentrics and four submetacentrics. This karyotype was symmetric. The general chromosomal formulae of both species, as well as the total average metaphase length of their haploid set are presented. The results of chromosomal studies of other related species are compared and discussed. Data from the karyotypic analysis showed that S. incrassatulus, S. antennatus and S. obliquus are separate biological species from taxonomical point of view.     

A transient post-translationally modified form of cartilage type II collagen is ignored by self-reactive T cells

Lysine residues in type II collagen (CII) are normally hydroxylated and subsequently glycosylated in the chondrocyte. The immunodominant T cell epitope of CII involves such post-translationally modified lysine at position 264 that has been shown to be critical in the pathogenesis of murine collagen-induced arthritis and also in human rheumatoid arthritis. In this study we identified a line of transgenic mice expressing a TCR specific for hydroxylated rat CII epitope. They were crossed with transgenic mice expressing the rat CII epitope, either specifically in cartilage (MMC mice) or systemically (TSC mice), to analyze T cell tolerance to a post-translationally modified form of self-CII. The mechanism of T cell tolerance to the hydroxylated CII epitope in TSC mice was found to involve intrathymic deletion and induction of peripheral tolerance. In contrast, we did not observe T cell tolerance in the MMC mice. Analysis of CII prepared from rat or human joint cartilage revealed that most of the lysine 264 is glycosylated rather than remaining hydroxylated. Therefore, we conclude that the transient post-translationally modified form of cartilage CII does not induce T cell tolerance. This lack of T cell tolerance could increase the risk of developing autoimmune arthritis.     

An alternative supporting electrolyte for enzyme immobilization in conducting polymers

In this study an alternative supporting electrolyte was used in enzyme immobilization. Invertase was studied to observe the effect of the supporting electrolyte. Sulfonated poly(arylene ether sulfone) was used as the supporting electrolyte during the electrolysis of pyrrole. The results show that the polymeric supporting electrolyte can be used instead of sodium dodecyl sulfate.     

Ligand binding to the human MT2 melatonin receptor: the role of residues in transmembrane domains 3, 6, and 7

To better understand the mechanism of interactions between G-protein-coupled melatonin receptors and their ligands, our previously reported homology model of human MT2 receptor with docked 2-iodomelatonin was further refined and used to select residues within TM3, TM6, and TM7 potentially important for receptor-ligand interactions. Selected residues were mutated and radioligand-binding assay was used to test the binding affinities of hMT2 receptors transiently expressed in HEK293 cells. Our data demonstrate that residues N268 and A275 in TM6 as well as residues V291 and L295 in TM7 are essential for 2-iodomelatonin binding to the hMT2 receptor, while TM3 residues M120, G121, V124, and I125 may participate in binding of other receptor agonists and/or antagonists. Presented data also hint at possible specific interaction between the side-chain of Y188 in second extracellular loop and N-acetyl group of 2-iodomelatonin.     

Structure and stability of columnar cyclomaltooctaose (gamma-cyclodextrin) hydrate

Rapid recrystallization of cyclomaltooctaose (gamma-cyclodextrin, gamma-CD) from aqueous solution resulted in formation of a columnar structure with only water as the guest molecule. Upon vacuum drying at 90 degrees C for 15 h, gamma-CD, which was initially in the columnar structure, became amorphous. Complementary water vapor sorption and wide-angle X-ray diffractometry experiments were performed on columnar gamma-CD in its vacuum dried and as-precipitated states to elucidate its stability in humid environments and the crystal structure present at varying sorption levels. These experiments show that both types of gamma-CD transform to the cage crystal structure upon exposure to water vapor at 40 degrees C and with an activity of 1.0. Sorption equilibrium is reached long before the crystal structure transformation is complete, indicating that a significant amount of molecular mobility exists in the various hydrated gamma-CD crystal structures.     

Animal-Driven Nutrient Supply Declines Relative to Ecosystem Nutrient Demand Along a Pond Hydroperiod Gradient

Ecosystems - In many lentic ecosystems, hydroperiod, or the duration of inundation, controls animal community composition and biomass. Although hydroperiod-imposed differences in wetland animal...     

Visualization and phenotyping of proinflammatory antigen-specific T cells during collagen-induced arthritis in a mouse with a fixed collagen type II-specific transgenic T-cell receptor β-chain

Introduction  

The Vβ12-transgenic mouse was previously generated to investigate the role of antigen-specific T cells in collagen-induced arthritis (CIA), an animal model for rheumatoid arthritis. This mouse expresses a transgenic collagen type II (CII)-specific T-cell receptor (TCR) β-chain and consequently displays an increased immunity to CII and increased susceptibility to CIA. However, while the transgenic Vβ12 chain recombines with endogenous α-chains, the frequency and distribution of CII-specific T cells in the Vβ12-transgenic mouse has not been determined. The aim of the present report was to establish a system enabling identification of CII-specific T cells in the Vβ12-transgenic mouse in order to determine to what extent the transgenic expression of the CII-specific β-chain would skew the response towards the immunodominant galactosylated T-cell epitope and to use this system to monitor these cells throughout development of CIA.