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91.
This paper reports on the optimization of poly(gamma-glutamic acid) (PGA) production by Bacillus licheniformis NCIM 2324 using a statistical approach. One-factor-at-a-time method was used to investigate the effect of carbon sources, nitrogen sources and pH on PGA production. Plackett-Burman design was adopted to select the most important nutrients influencing the yield of PGA. After identifying effective nutrients, response surface methodology was used to develop a mathematical model to identify the optimum concentrations of the key nutrients for higher PGA production, and confirm its validity experimentally. PGA production increased significantly from 5.27 to 26.12 g/l when the strain was cultivated in the optimal medium developed by using statistical approach, as compared to basal medium. 相似文献
92.
Sangeeta R. Kashyap Dima L. Diab Allison R. Baker Lisa Yerian Harpreet Bajaj Courtney Gray‐McGuire Philip R. Schauer Manjula Gupta Ariel E. Feldstein Stanley L. Hazen Catherine M. Stein 《Obesity (Silver Spring, Md.)》2009,17(9):1696-1701
Although nonalcoholic fatty liver disease (NAFLD) is frequent in obesity, the metabolic determinants of advanced liver disease remain unclear. Adipokines reflect inflammation and insulin resistance associated with obesity and may identify advanced NAFLD. At the time of obesity surgery, 142 consecutive patients underwent liver biopsy and had their preoperative demographic and clinical data obtained. Liver histology was scored by the NAFLD activity score, and patients subdivided into four groups. Concentrations of retinol‐binding protein 4 (RBP4), adiponectin, tumor necrosis factor‐α (TNF‐α), and leptin were determined ~1 week prior to surgery and results were related to liver histology. The prevalence of no NAFLD was 30%, simple steatosis 23%, borderline nonalcoholic steatohepatitis (NASH) 28%, and definitive NASH 18%. Type 2 diabetes mellitus (T2DM) and metabolic syndrome (MS) prevalence were 39 and 75%, respectively, and did not differ across the four histological groups (P = NS). Triglyceride (TG) and alanine transaminase (ALT) levels, strongly associated with advanced stages of NAFLD and NASH (P = 0.04). TG levels >150 mg/dl, increased the likelihood of NASH 3.4‐fold, whereas high‐density lipoprotein (HDL) levels predicted no NAFLD (P < 0.01). Concentrations of TNF‐α, leptin, and RBP4 did not differ among histological groups and thus did not identify NASH; however, there was a trend for adiponectin to be lower in NASH vs. no NAFLD (P = 0.061). In summary, both TG and ALT levels assist in identification of NASH in an obesity surgery cohort. These findings underscore the importance of fatty acid delivery mechanisms to NASH development in severely obese individuals. 相似文献
93.
The effects of aeration and agitation on the production and molecular weight of poly (γ-glutamic acid) (PGA) were systematically
investigated in batch fermentor cultures of Bacillus licheniformis NCIM 2324. A high aeration rate and agitation speed enhanced the growth of B. licheniformis NCIM 2324, but did not always lead to high PGA production. Additionally, PGA production actually decreased at very high aeration
rates and agitation speeds. The maximum PGA concentration was obtained at 750 rpm and 1 vvm. Rheological studies revealed
that fermentation broth during production of PGA exhibited pseudoplastic behavior. The effects of aeration and agitation on
the molecular weight of PGA were also studied, and the rate and extent of the decrease in the molecular weight of PGA as a
function of time were found to be much greater at high aeration than low aeration. The PGA production of 46.34 g/L with a
specific productivity of 0.17 g-PGA/g-biomass/ h and a PGA yield of 0.48 with respect to total substrate observed in the present
study are much higher than the values reported in previously conducted studies. 相似文献
94.
Electron cryomicroscopy (cryoEM) is capable of imaging large macromolecular machines composed of multiple components. However, it is currently only possible to achieve moderate resolution at which it may be possible to computationally extract the individual components in the machine. In this work, we present application details of an automated method for detecting and segmenting the components of a large machine in an experimentally determined density map. This method is applicable to object with and without symmetry and takes advantage of global and local symmetry axes if present. We have applied this segmentation algorithm to several cryoEM data sets already deposited in EMDB with various complexities, symmetries and resolutions and validated the results using manually segmented density and available structures of the components in the PDB. As such, automated segmentation could become a useful tool for the analysis of the ever-increasing number of structures of macromolecular machines derived from cryoEM. 相似文献
95.
In four experiments, we examined the effects on the affiliative preferences of 'focal' female Japanese quail given the opportunity to watch a conspecific male interact with a 'model' female. Experiments were conducted in three, 10-min phases: (1) a pretest, during which a 'focal' female chose between two males; (2) an observation phase, when each focal female watched the male she had spent less time near during the pretest (her 'nonpreferred' male) interact with a 'model' quail; and (3) a post-test, during which each focal female again chose between her nonpreferred and preferred males. Focal females increased their preferences for nonpreferred males after seeing them together with a model female (but not a model male), even if the nonpreferred male and model female were separated by an opaque barrier that prevented them from interacting. A focal female's preference for the end of the enclosure containing her nonpreferred male was not increased when she either watched him court a concealed model female or watched a model female that was being courted by him. Taken together, the present results suggest that a simple tendency for females to approach areas where they have previously seen a male and female quail, in preference to locations where they have seen only a male quail, can explain some of the effect of watching a nonpreferred male mate on a female's tendency to affiliate with him. However, focal females also showed enhanced preferences for nonpreferred males they had seen mating after we both moved those males and controlled for effects of transposition. Thus, processes akin to both 'mate choice copying' and 'conspecific cueing' remain viable explanations for the increase in a focal female quail's tendency to affiliate with a male she watched mate with another female. Copyright 1999 The Association for the Study of Animal Behaviour. 相似文献
96.
Kumar A Bansal D Bajaj K Sharma S Archana Srivastava VK 《Bioorganic & medicinal chemistry》2003,11(23):5281-5291
Diazotization of N-benzylidene anthranilic acids 1a-1n at pH 9 yielded N-[alpha-(phenylazo) benzylidene] anthranilic acids 2a-2n and at pH 3 yielded N-benzylidene-5-(phenylazo) anthranilic acids 3a-3n. When compounds 3a-3n were treated with thioglycolic/thiolactic acid in the presence of anhydrous ZnCl(2), 2-(4-oxo-2-phenylthiazolidin-3-yl)-5-(phenylazo) benzoic acids 4a-4n were afforded. The newly synthesized compounds were screened for their anti-inflammatory and analgesic activities and were compared with standard drugs, aspirin and phenylbutazone. Out of the compounds studied, the most active compound 4n showed more potent activity than the standard drugs at all doses tested. 相似文献
97.
In growing Escherichia coli K12 cells, the cryptic bgl operon is activated
98% of the time by insertions of IS1 or IS5 into the control region,
designated bglR. The activated bgl operon permits utilization of the
beta-glucoside sugar arbutin as a sole carbon and energy source. The bgl
operon is also activated by late-occurring mutations during prolonged
selection on arbutin. The late-occurring mutations that occurred during
prolonged carbon starvation in the presence of arbutin were "adaptive
mutations" because they were specific to the presence of arbutin, and they
did not occur during prolonged starvation in the absence of arbutin. The
spectrum of late-arising mutations differed from that of early-arising,
growth-dependent mutations in that 20% of the late-arising mutants resulted
from mutations at the hns locus. This provides the first direct evidence
for adaptive mutagenesis mediated by the insertion of IS elements. Because
no special genetic background is required to select Bgl+ mutants, this
affords the opportunity to study IS-element-mediated adaptive mutagenesis
in a variety of genetic backgrounds, including the backgrounds of natural
isolates of E. coli.
相似文献
98.
Jain RK; Piskorz CF; Huang BG; Locke RD; Han HL; Koenig A; Varki A; Matta KL 《Glycobiology》1998,8(7):707-717
The selectins interact in important normal and pathological situations with
certain sialylated, fucosylated glycoconjugate ligands containing sialyl
Lewisx(Neu5Acalpha2-3Galbeta1-4(Fucalpha1-3)GlcN Ac). Much effort has gone
into the synthesis of sialylated and sulfated Lewisxanalogs as competitive
ligands for the selectins. Since the natural selectin ligands GlyCAM-1 and
PSGL-1 carry sialyl Lewisxas part of a branched Core 2 O-linked structure,
we recently synthesized Galbeta1-4(Fucalpha1-3)GlcNAcbeta1-6(SE-3Galbeta1++
+-3)GalNAc1alphaOMe and found it to be a moderately superior ligand for L
and P-selectin (Koenig et al. , Glycobiology 7, 79-93, 1997). Other studies
have shown that sulfate esters can replace sialic acid in some selectin
ligands (Yeun et al. , Biochemistry, 31, 9126-9131, 1992; Imai et al. ,
Nature, 361, 555, 1993). Based upon these observations, we hypothesized
that Neu5Acalpha2-3Galbeta1-3GalNAc might have the capability of
interacting with L- and P-selectin. To examine this hypothesis, we
synthesized Galbeta1-4(Fucalpha1-3)GlcNAcbeta1-6(Neu5Acalpha2++
+-3Galbeta1-3)- GalNAc alpha1-OB, which was found to be 2- to 3-fold better
than sialyl Lexfor P and L selectin, respectively. We also report the
synthesis of an unusual structure GalNAcbeta1-4(Fucalpha1-
3)GlcNAcbeta1-OMe (GalNAc- Lewisx-O-methyl glycoside), which also proved to
be a better inhibitor of L- and P-selectin than sialyl Lewisx-OMe.
Combining this with our knowledge of Core 2 branched structures, we have
synthesized a molecule that is 5- to 6-fold better at inhibiting L- and
P-selectin than sialyl Lewisx-OMe, By contrast to unbranched structures,
substitution of a sulfate ester group for a sialic acid residue in such a
molecule resulted in a considerable loss of inhibition ability. Thus, the
combination of a sialic acid residue on the primary (beta1-3) arm, and a
modified Lexunit on the branched (beta1-6) arm on an O-linked Core 2
structure generated a monovalent synthetic oliogosaccharide inhibitor
superior to SLexfor both L- and P-selectin.
相似文献
99.
Tomiko Oskotsky Ruchika Bajaj Jillian Burchard Taylor Cavazos Ina Chen William T. Connell Stephanie Eaneff Tianna Grant Ishan Kanungo Karla Lindquist Douglas Myers-Turnbull Zun Zar Chi Naing Alice Tang Bianca Vora Jon Wang Isha Karim Claire Swadling Janice Yang AIALL Student Cohort Bill Lindstaedt Marina Sirota 《PLoS computational biology》2022,18(1)
Artificial Intelligence (AI) has the power to improve our lives through a wide variety of applications, many of which fall into the healthcare space; however, a lack of diversity is contributing to limitations in how broadly AI can help people. The UCSF AI4ALL program was established in 2019 to address this issue by targeting high school students from underrepresented backgrounds in AI, giving them a chance to learn about AI with a focus on biomedicine, and promoting diversity and inclusion. In 2020, the UCSF AI4ALL three-week program was held entirely online due to the COVID-19 pandemic. Thus, students participated virtually to gain experience with AI, interact with diverse role models in AI, and learn about advancing health through AI. Specifically, they attended lectures in coding and AI, received an in-depth research experience through hands-on projects exploring COVID-19, and engaged in mentoring and personal development sessions with faculty, researchers, industry professionals, and undergraduate and graduate students, many of whom were women and from underrepresented racial and ethnic backgrounds. At the conclusion of the program, the students presented the results of their research projects at the final symposium. Comparison of pre- and post-program survey responses from students demonstrated that after the program, significantly more students were familiar with how to work with data and to evaluate and apply machine learning algorithms. There were also nominally significant increases in the students’ knowing people in AI from historically underrepresented groups, feeling confident in discussing AI, and being aware of careers in AI. We found that we were able to engage young students in AI via our online training program and nurture greater diversity in AI. This work can guide AI training programs aspiring to engage and educate students entirely online, and motivate people in AI to strive towards increasing diversity and inclusion in this field. 相似文献
100.
The role of a single N-linked glycosylation site for a functional epitope of herpes simplex virus type 1 envelope glycoprotein gC 总被引:4,自引:2,他引:2
Olofsson S; Bolmstedt A; Biller M; Mardberg K; Leckner J; Malmstrom BG; Trybala E; Bergstrom T 《Glycobiology》1999,9(1):73-81
A monoclonal antibody, B1C1, binding to an epitope of antigenic site II of
the herpes simplex virus type 1 (HSV-1) glycoprotein gC-1, is a potent
inhibitor of two important biological functions of gC-1: its binding to
cell surface heparan sulfate and its binding to the receptor for complement
factor C3b. Here, we have analyzed a B1C1-resistant HSV- 1 variant
(HSV-12762/B1C1B4.2), obtained after passage of wild type HSV- 1
(HSV-12762) in the presence of high concentrations of B1C1. The transport
of newly synthesized mutant gC-1 to the cell surface was comparable to that
of wild type glycoprotein, but no binding of surface- associated mutant
gC-1 to B1C1 was detected. However, mutant and wild type gC-1 bound equally
well to other site II Mabs. Attachment of wild type but not mutant virus
was inhibited by B1C1. Sequencing of the mutant gC-1 gene revealed only one
nucleotide change, resulting in replacement of Thr150 by an Ile, in turn
destroying an N-glycosylation site at Asn148. Loss of one complex type
N-linked glycan was confirmed by endoglycosidase digestion and subsequent
SDS-polyacrylamide gel electrophoresis. Circular dichroism analysis of
purified gC-1 from cells infected with mutant or wild type virus did not
reveal any difference in secondary structure between mutant and wild type
gC-1. It was not possible to obtain a B1C1-resistant phenotype by
nucleotide- directed mutagenesis of gC-1 where Asn148 was changed to a
glutamine. These data demonstrated that the threonine of the glycosylation
site and not the N-linked glycan in itself was essential for B1C1 binding
相似文献