EDAS, databases of alternatively spliced human genes

EDAS, a database of alternatively spliced human genes, contains data on the alignment of proteins, mRNAs, and EST. It contains information on all exons and introns observed, as well as elementary alternatives formed from them. The database makes it possible to filter the output data by changing the cut-off threshold by the significance level. The database is accessible at http://www.gene-bee.msu.ru/edas/.     

The in vitro motility assay to study the calcium-mechanical relationship in skeletal and cardiac muscles

In a series of experiments on regulated contractile systems (i.e., in vitro mobile systems with reconstructed thin filaments), the velocities of the movement of a thin filament on the surface covered by either rabbit skeletal or rat cardiac myosin at various concentrations of calcium ions in solution (in the pCa range from 4 to 8) were assessed. The corresponding "pCa-velocity" relationships were plotted, which proved to be of the sigmoid form. It was found that, at a saturating calcium concentration (pCa 4), the velocity of regulated thin filaments was 65% higher than for unregulated ones in the case of skeletal myosin and 87% higher than for unregulated thin filaments in the case of cardiac myosin. It was also found that the Hill coefficient was 1.95 and 2.5 for skeletal and cardiac myosins, respectively. The difference in the Hill coefficients for skeletal and cardiac myosins is discussed in terms of the difference in contribution of cooperativity mechanisms of contractile and regulatory proteins in the regulation of contraction in these types of muscles.     

Transient currents and Ca2+ gradient relaxation in characean algae cells: theory and experiment

Transient Ca2+ and Ca2+-dependent Cl- currents of plasmatic membranes of voltage-clamped Chara corallina freshwater alga cells were studied. Our earlier described method was used for rapid (approximately 10 ms) injection of Ca2+ ions into the cell during the deactivation period of calcium channels following their activation by a positive voltage pulse (injection by "tail" Ca2+ current). This procedure allowed one to determine the amplitude of the Ca2+ component, as well as the amplitude and kinetics of the submembrane Ca2+ concentration-dependent Cl- component for the transient current. Calculations based on the cell model allowing for Ca2+ diffusion, the Ca2+-buffering properties of the cytoplasm, and the nonlinear dependency of iCl on [Ca2+]cyt, as well as the presence of chloroplasts agreed well with the experimentally observed behavior of the transient current. The slow stage of the [Ca2+]cyt relaxation to the resting level (approximately 10(-7) M), related to the functioning of Ca2+-ATPases, was shown to take approximately 10(2) s. We assume this stage to determine the duration of the refractory period after the generation of action potential.     

A study of the inhomogeneity of bilayer lipid membranes by measurements of higher harmonics of transmembrane current

Higher harmonics of alternating current in bilayer lipid membranes caused by sinusoidal voltage applied to the membrane were measured. The bilayer lipid membranes were prepared from diphytanoylphosphatidylcholine in n-decane and n-tetradecane, and measurements were conducted with the aid of an analog-to-digital converter of 16th category. Sinusoidal voltage was formed using a digital-to-analog converter of the 16th category. The dynamic region of measurements was up 90 dB. The results of measurements were used to determine the alpha and beta coefficients of the expansion of membrane capacity C in terms of membrane voltage U C = C0 (1 + alphaU2 + betaU4). We showed in the framework of the electrostriction model that the relation between the alpha and beta coefficients characterizes the inhomogeneity of bilayer lipid membrane with respect to its thickness and Young modulus of elasticity.     

Mechanosensitivity of gramicidin A channels in semispherical bilayer membranes at constant tension

Mechanoelectrical transduction in gramicidin A channels was studied in macroscopic planar lipid bilayer membranes bulged at constant tension. We found a supralinear increase in the single channel activity, which was proportional to the square of membrane radius but could not be accounted for by the increase in membrane surface area or by recruitment of new channels. When being extrapolated to biological membranes, these observations may suggest that the activity of permeability of ion channels can be influenced simply by changing the shape of the membrane, with or without stretching.     

Biological structures as photonic objects

Samples of the material of mollusks bowls, peacock wing elements, and human horn skin have been investigated using the methods of spectroscopy, atomic-force microscopy, X-ray diffraction analysis, and thermoconductance. Ordered superstructures were revealed in these objects. Evidence for effective interactions of both electromagnetic and electronic waves with these structures was obtained. It was shown that the interaction with electromagnetic waves reveals photonic properties and the interaction with electronic waves, the semiconducting properties of biological objects.     

Effect of the epimutagen 5-azacytidine on the structure of floral-stalk metameres in sugar beet (Beta vulgaris L)

This study is dedicated to the effect of the epimutagen 5-azacytidine on the structure of floral-stalk metameres in sugar beet Beta vulgaris L. Simple phytomeres consist of separate flowers (unianthous plants; UA phenotype), while complex metameres occur in synanthous plants (SA phenotype). Treatment of the synanthous line mcSOAN-5 dramatically reduced the number of flowers on phytomeres as early as in generation zero (A0Az0). For the first time, plants with simple phytomeres were found in this line. The proportion of plants with the SA phenotype in generation A0Az0 was 7.7%. In generation A1Az1, the tendency for reduction of the number of flowers on phytomeres persisted. The proportion of plants with simple phytomeres reached 77%; i.e., the frequency of SA phenotypes in the progeny (A1Az1) increased tenfold in comparison with the parents A0Az0. The high frequency of morphogenetic changes in the floral stalk structure under the influence of the epimutagen suggests that the variability of the UA--SA character in beet populations is of epigenetic rather than mutational nature.     

Population genetic study of Russian cosmonauts and test subjects: genetic demographic parameters and immunogenetic markers

Genetic demographic characteristics and immunogenetic markers (blood groups ABO, Rhesus, MNSs, P, Duffy, Kidd, and Kell) have been studied in a group of 132 Russian cosmonauts and test subjects (CTSG). Analysis of pedigrees has shown a high exogamy in the preceding generations: almost half of the subjects have mixed ethnic background. According to the results of genetic demographic analysis, a sample from the Moscow population was used as control group (CG). Comparison between the CTSG and CG has demonstrated significant differences in genotype frequencies for several blood group systems. The CTSG is characterized by a decreased proportion of rare interlocus genotypic combinations and an increased man heterozygosity. Analysis of the distributions of individual heterozygosity for loci with codominant expression of alleles has shown that highly heterozygous loci are more frequent in the CTSG. Taking into account that the CTSG has been thoroughly selected from the general population, it is concluded that heterozygosity is related to successful adaptation to a space flight.     

Blood parameters as consistent predictors of nestling performance in great tits (Parus major) in the wild

Fourteen blood profile variables were analysed in 12-day-old nestlings of great tits (Parus major) in the wild. Except for plateletocrit and platelet distribution width, the traits showed a consistent pattern of variation, with significant intra-brood repeatabilities; they were shown to be significant predictors of nestling performance as measured by survival from hatching to fledging. It is concluded that all blood characteristics that show consistent within-brood variation may be useful as indicators of some aspects of nestling condition/health status in wild birds.