Warming Reduces Carbon Losses from Grassland Exposed to Elevated Atmospheric Carbon Dioxide

The flux of carbon dioxide (CO₂) between terrestrial ecosystems and the atmosphere may ameliorate or exacerbate climate change, depending on the relative responses of ecosystem photosynthesis and respiration to warming temperatures, rising atmospheric CO₂, and altered precipitation. The combined effect of these global change factors is especially uncertain because of their potential for interactions and indirectly mediated conditions such as soil moisture. Here, we present observations of CO₂ fluxes from a multi-factor experiment in semi-arid grassland that suggests a potentially strong climate – carbon cycle feedback under combined elevated [CO₂] and warming. Elevated [CO₂] alone, and in combination with warming, enhanced ecosystem respiration to a greater extent than photosynthesis, resulting in net C loss over four years. The effect of warming was to reduce respiration especially during years of below-average precipitation, by partially offsetting the effect of elevated [CO₂] on soil moisture and C cycling. Carbon losses were explained partly by stimulated decomposition of soil organic matter with elevated [CO₂]. The climate – carbon cycle feedback observed in this semiarid grassland was mediated by soil water content, which was reduced by warming and increased by elevated [CO₂]. Ecosystem models should incorporate direct and indirect effects of climate change on soil water content in order to accurately predict terrestrial feedbacks and long-term storage of C in soil.     

A Comprehensive Census of Microbial Diversity in Hot Springs of Tengchong,Yunnan Province China Using 16S rRNA Gene Pyrosequencing

The Rehai and Ruidian geothermal fields, located in Tengchong County, Yunnan Province, China, host a variety of geochemically distinct hot springs. In this study, we report a comprehensive, cultivation-independent census of microbial communities in 37 samples collected from these geothermal fields, encompassing sites ranging in temperature from 55.1 to 93.6°C, in pH from 2.5 to 9.4, and in mineralogy from silicates in Rehai to carbonates in Ruidian. Richness was low in all samples, with 21–123 species-level OTUs detected. The bacterial phylum Aquificae or archaeal phylum Crenarchaeota were dominant in Rehai samples, yet the dominant taxa within those phyla depended on temperature, pH, and geochemistry. Rehai springs with low pH (2.5–2.6), high temperature (85.1–89.1°C), and high sulfur contents favored the crenarchaeal order Sulfolobales, whereas those with low pH (2.6–4.8) and cooler temperature (55.1–64.5°C) favored the Aquificae genus Hydrogenobaculum. Rehai springs with neutral-alkaline pH (7.2–9.4) and high temperature (>80°C) with high concentrations of silica and salt ions (Na, K, and Cl) favored the Aquificae genus Hydrogenobacter and crenarchaeal orders Desulfurococcales and Thermoproteales. Desulfurococcales and Thermoproteales became predominant in springs with pH much higher than the optimum and even the maximum pH known for these orders. Ruidian water samples harbored a single Aquificae genus Hydrogenobacter, whereas microbial communities in Ruidian sediment samples were more diverse at the phylum level and distinctly different from those in Rehai and Ruidian water samples, with a higher abundance of uncultivated lineages, close relatives of the ammonia-oxidizing archaeon “Candidatus Nitrosocaldus yellowstonii”, and candidate division O1aA90 and OP1. These differences between Ruidian sediments and Rehai samples were likely caused by temperature, pH, and sediment mineralogy. The results of this study significantly expand the current understanding of the microbiology in Tengchong hot springs and provide a basis for comparison with other geothermal systems around the world.     

Quantification Assays for Total and Polyglutamine-Expanded Huntingtin Proteins

The expansion of a CAG trinucleotide repeat in the huntingtin gene, which produces huntingtin protein with an expanded polyglutamine tract, is the cause of Huntington''s disease (HD). Recent studies have reported that RNAi suppression of polyglutamine-expanded huntingtin (mutant HTT) in HD animal models can ameliorate disease phenotypes. A key requirement for such preclinical studies, as well as eventual clinical trials, aimed to reduce mutant HTT exposure is a robust method to measure HTT protein levels in select tissues. We have developed several sensitive and selective assays that measure either total human HTT or polyglutamine-expanded human HTT proteins on the electrochemiluminescence Meso Scale Discovery detection platform with an increased dynamic range over other methods. In addition, we have developed an assay to detect endogenous mouse and rat HTT proteins in pre-clinical models of HD to monitor effects on the wild type protein of both allele selective and non-selective interventions. We demonstrate the application of these assays to measure HTT protein in several HD in vitro cellular and in vivo animal model systems as well as in HD patient biosamples. Furthermore, we used purified recombinant HTT proteins as standards to quantitate the absolute amount of HTT protein in such biosamples.     

Nestling telomere shortening,but not telomere length,reflects developmental stress and predicts survival in wild birds

Developmental stressors often have long-term fitness consequences, but linking offspring traits to fitness prospects has remained a challenge. Telomere length predicts mortality in adult birds, and may provide a link between developmental conditions and fitness prospects. Here, we examine the effects of manipulated brood size on growth, telomere dynamics and post-fledging survival in free-living jackdaws. Nestlings in enlarged broods achieved lower mass and lost 21% more telomere repeats relative to nestlings in reduced broods, showing that developmental stress accelerates telomere shortening. Adult telomere length was positively correlated with their telomere length as nestling (r = 0.83). Thus, an advantage of long telomeres in nestlings is carried through to adulthood. Nestling telomere shortening predicted post-fledging survival and recruitment independent of manipulation and fledgling mass. This effect was strong, with a threefold difference in recruitment probability over the telomere shortening range. By contrast, absolute telomere length was neither affected by brood size manipulation nor related to survival. We conclude that telomere loss, but not absolute telomere length, links developmental conditions to subsequent survival and suggest that telomere shortening may provide a key to unravelling the physiological causes of developmental effects on fitness.     

Response of Terrestrial CH4 Uptake to Interactive Changes in Precipitation and Temperature Along a Climatic Gradient

We determined the response of terrestrial methane (CH₄) uptake to 4 years of full-factorial manipulations of precipitation and temperature in four ecosystems along a 50 km warm and dry to cold and wet climatic gradient (desert grassland, pinyon-juniper woodland, ponderosa pine forest, and mixed conifer forest). Our goals were to determine whether ecosystem-specific, intraannual, and interactive responses to altered precipitation and warming are quantitatively important. Passive collectors and interceptors increased (+50% per event) and reduced (−30% per event) the quantity of precipitation delivered to experimental plant–soil mesocosms, and downward transfer along the elevation gradient warmed mesocosms by 1.8°C on average. Methane uptake in the colder and wetter ecosystems along the gradient decreased with increasing precipitation, especially during the wet season. The warmer and drier ecosystems, however, responded more strongly to warming, exhibiting less CH₄ uptake with increasing temperature. We found no interaction between altered precipitation and warming in any ecosystem. Soil CH₄ consumption in the laboratory was a strong predictor of ecosystem differences in field CH₄ consumption, but was a poor predictor of the effects of climatic change observed in the field. Based on our results, future climate scenarios that are wet and warm will cause the largest reduction in terrestrial CH₄ uptake across ecosystem types.     

Calcium/calmodulin-regulated receptor-like kinase CRLK1 interacts with MEKK1 in plants

Recently we reported that CRLK1, a novel calcium/calmodulin-regulated receptor-like kinase plays an important role in regulating plant cold tolerance. Calcium/calmodulin binds to CRLK1 and upregulates its activity. Gene knockout and complementation studies revealed that CRLK1 is a positive regulator of plant response to chilling and freezing temperatures. Here we show that MEKK1, a member of MAP kinase kinase kinase family, interacts with CRLK1 both in vitro and in planta. The cold triggered MAP kinase activation in wild-type plants was abolished in crlk1 knockout mutants. Similarly, the cold induced expression levels of genes involved in MAP kinase signaling are also altered in crlk1 mutants. These results suggest that calcium/calmodulinregulated CRLK1 modulates cold acclimation through MAP kinase cascade in plants.Key words: calcium, calmodulin, cold stress, MAPK, Arabidopsis, protein phosphorylationCalcium, a universal second messenger in eukaryotic cells, mediates changes in external and internal signals leading to the physiological responses.^1–4 Calcium/calmodulin (Ca²⁺/CaM)-dependent protein kinases (CaMKs) are very important players in calcium/calmodulin mediated signaling in mammalian cells.⁵ In plants, Ca²⁺/CaM-dependent protein phosphorylation was observed more than 25 years ago.⁶ Several calmodulin-regulated protein kinases have been identified and characterized.^7,8 For example, plants have a unique chimeric Ca²⁺/CaM-dependent protein kinase (CCaMK), which exhibits Ca²⁺-dependent autophosphorylation and Ca²⁺/CaM-dependent substrate phosphorylation.⁹ CCaMK is required for bacterial and fungal symbioses in plants.^10–12 Recently, we characterized a novel plant-specific calcium/CaM-regulated receptor-like kinase, CRLK1.¹³ Ca²⁺/CaM binds to CRLK1 and stimulates its kinase activity. Functional studies with CRLK1 indicate that CRLK1 acts as a positive regulator in plant response to chilling and freezing temperatures. To further define the CRLK1-mediated signal pathway, we isolated CRLK1 interacting proteins by co-immunoprecipitation using an anti-CRLK1 antibody. Since cold increases the amount of CRLK1 protein, wildtype plants (WT) were treated at 4°C for 1 hr before co-immunoprecipitation. The resulting CRLK1 immunocomplex was separated by SDS-PAGE. We observed several bands of different sizes only in the wild-type but not in the crlk1 knockout mutant plants (Fig. 1A). Furthermore, the intensity of these bands increased upon cold treatment, suggesting that they are the putative partners or associated proteins of the CRLK1 immunocomplex.Open in a separate windowFigure 1CRLK1 Interacts with MEKK1. (A) One-dimension SDS-PAGE of anti-CRLK1 immunocomplexes from 3-week-old WT or crlk1 plants with or without cold treatment. One mg of total protein was used for immunoprecipitation. (B) A list of putative CRLK1-interacting proteins determined by MALDI-TOF-MS analysis. (C) CRLK1 interacts with MEKK1 as shown by GST pull-down assay. (D) BiFC analysis show that CR LK associates with MEKK1 in vivo. Upper row shows that CRLK and MEKK1 associate both on cell membrane and in endosomes. The middle and last rows are controls. Bar = 10 µm.To determine the identities of these proteins, mass spectrometric analysis was performed with the total immunocomplex.¹⁴ In addition to CRLK1, there were 12 other proteins which matched the Arabidopsis database. Several of them appeared in the pull-down complex from WT, but not from crlk1 mutants. These putative interacting proteins included MEKK1, another unknown protein kinase, a type 2C phosphatase and CaM (Fig. 1B). MEKK1 is one of the 60 putative MAPKKKs in the Arabidopsis genome, and sits on the top of mitogen-activated protein kinase (MAPK) cascade. The MAPK signaling consists of a cascade of three consecutively acting protein kinases, a MAP kinase kinase kinase (MAPKKK), a MAP kinase kinase (MAPKK) and a MAP kinase (MAPK). Plants possess multiple MAPKKKs, MAPKKs and MAPKs, which respond to different upstream signals and activate distinct downstream pathways.^15–17 The specific MAPK module responding to lower temperature has been determined in Arabidopsis.^18,19 MEKK1, a member of MAPKKKs, specifically interacts and phosphorylates MKK2 and regulates COR genes expression in response to cold stress.¹⁹ MEKK1 has been shown to play a role in mediating reactive oxygen species homeostasis.^20,21 Therefore we selected MEKK1 from the putative CRLK1 partners for further studies.     

Tree Patches Show Greater N Losses but Maintain Higher Soil N Availability than Grassland Patches in a Frequently Burned Oak Savanna

Long-term prescribed fires have increased woody canopy openness and reduced nitrogen (N) cycling (that is, net N mineralization) in an oak savanna in Minnesota, USA. It is unclear how fire-induced shifts from oak-dominated to C4 grass-dominated vegetation contribute to this decline in N cycling compared to direct effects of increasing fire frequency promoting greater N losses. We determined (1) the magnitude of decline in net N mineralization in oak versus grass-dominated patches with increasing fire frequency and (2) if differences in net N mineralization between oak and grass patches in frequently burned oak savanna (burned 8 out of 10 years on average during the last 40 years) could be attributed to differences in N losses through volatilization and leaching or to plant traits affecting decomposition and mineralization. In situ net N mineralization declined with increasing fire frequency overall, but this decline was less in oak- than in grass-dominated patches, with oak-dominated patches having more than two times higher net N mineralization than grass-dominated patches. Greater net N mineralization in oak-dominated patches occurred despite greater N losses through volatilization and leaching (on average 1.8 and 1.4 g m⁻² y⁻¹ for oak- and grass-dominated patches, respectively), likely because of higher plant litter N concentration in the oak-dominated patches. As total soil N pools in the first 15 cm did not differ between oak- and grass-dominated patches (on average 83 g N m⁻²), N inputs from atmospheric deposition and uptake from deep soil layers may offset higher N losses. Our results further show that net N mineralization rates decline within 5 years after tree death and subsequent colonization by C4 grasses to levels observed in grass-dominated patches. Although long-term prescribed fires often directly reduce N stocks and cycling because of increased N losses, this study has shown that fire-induced shifts in vegetation composition can strongly contribute to the declines in N cycling in systems that are frequently disturbed by fires with potential feedbacks to plant productivity.     

Are workers of Atta leafcutter ants capable of reproduction?

Summary. Workers of most eusocial Hymenoptera can produce sons after queen loss, which (posthumously) benefits the queen and increases worker inclusive fitness. However, the evolutionary loss of worker ovaries has occurred in several lineages, while workers in other taxa may be infertile despite having ovaries. Workers of Atta leafcutter ants only lay trophic eggs in queenright colonies. Although Atta colonies are commonly kept at universities, museums, and zoos, no reports of worker sons in orphaned colonies exist, suggesting that Atta workers are infertile. To explicitly test this, we created eleven orphaned laboratory nests of Atta cephalotes, A. sexdens, and A. colombica, and maintained them for 3–6 months after queen loss. Eight colonies did not produce any brood, but three nests produced 1–4 worker-derived male larvae and pupae. Microsatellite genotyping indicated that these were worker sons. However, all males were tiny (3.5–9 mm long) compared to normal queen sons (16 mm long), and would almost certainly be unable to mate. We also found reproductive eggs, but most of these had no yolk and were thus inviable. We conclude that Atta workers are not completely infertile, but that worker fertility is low compared to the sister genus Acromyrmex, where workers routinely produce normally-size males after queen loss in the laboratory. We hypothesize that worker reproduction in orphaned Atta field colonies is almost never successful because the last workers die before their sons can be raised to adulthood, but that the importance of worker-laid trophic eggs for queen feeding has precluded the evolutionary loss of worker ovaries. Received 17 January 2005; revised 12 September 2005; accepted 3 October 2005.     

Rhizosphere priming effects of soybean and cottonwood: do they vary with latitude?

Plant and Soil - Soil seed banks are an important source of seedling recruits in grassland ecosystems, particularly following large-scale disturbance. Nonetheless, the relative importance of...