Species richness estimation of bird communities: how to control for sampling effort?

Since estimates of total species richness increase with sampling effort, methods to control for this sampling effect need to be tested and used. We present seven non-parametric and 12 accumulation curve methods that have been used recently in the ecological literature. To test their performance, we used data from bird communities in the Queen Charlotte Islands, Canada. The performance of each method was evaluated by calculating the bias and precision of its estimates against the known total species richness. For our data set, the two Chao estimators were the overall least biased and most precise estimation methods, followed by the two jackknife estimators, thus supporting results of previous studies. Nonparametric estimators tended to perform better than accumulation curve models. Most estimation methods had the problem that they tended to underestimate species richness for early samples, but slightly overestimated it for late samples. We briefly discuss the practical use of these methods which may greatly increase our ability to answer ecological questions and to guide conservation decisions, especially for species-rich tropical bird communities.     

Acanthamoeba Interaction with Extracellular Matrix Glycoproteins: Biological and Biochemical Characterization and Role in Cytotoxicity and Invasiveness

ABSTRACT. Acanthamoeba are free-living amoebae that are dispersed in most environments. Occasionally, Acanthamoeba cause serious human infections, such as keratitis and encephalitis. During the infection process, amoebic adhesion to, and degradation of, host cells and their extracellular matrix (ECM) appear to be important requirements. We examined the interaction of Acanthamoeba with the ECM, and related this event to host cell destruction and tissue invasion. Pathogenic Acanthamoeba culbertsoni differentially attached on the ECM glycoproteins laminin-1, collagen-I, and fibronectin, as compared with non-pathogenic Acanthamoeba astronyxis . Binding to collagen-I and laminin-1 induced A. culbertsoni to become flattened and elongated. Because attachment on laminin-1 was higher in A. culbertsoni , laminin-1 was chosen for further analysis. A 55-kDa laminin-binding protein was identified in pathogenic amoebae, but it was not found in non-pathogenic amoebae. No differential cytotoxicity against distinct cell types was observed between A. culbertsoni incubated with or without ECM. On the other hand, binding on collagen-I or matrigel scaffolds induced a differential effect where A. culbertsoni invaded collagen-I matrices more rapidly. These results indicate that ECM recognition, as an antecedent to tissue invasion, may be a trait characteristic of pathogenic Acanthamoeba .     

Molecular evidence for allopolyploid speciation and a single origin of the western Mediterranean orchid Dactylorhiza insularis (Orchidaceae)

The hybrid origin of the western Mediterranean orchid Dactylorhiza insularis was demonstrated by genetic markers. Allozyme data showed that throughout its range D. insularis has an allotriploid constitution and reproduces apomictically. The parental species of D. insularis were identified as D. romana andD. sambucina; they contributed 2 alleles and 1 allele, respectively, at the allozyme loci studied. The maternal species of D. insularis was D. romana , as inferred from cpDNA ( trn L(UAA) intron). High genetic similarities were found when comparing present populations of D. romana and D. sambucina with their respective genomes 'frozen' in D. insularis. Dactylorhiza insularis showed fixed (or nearly fixed) heterozygosity at 11 out of the 19 loci studied, and poor genetic variation: eight multilocus genotypes were detected at allozyme level. No multilocus genotype differs from the most similar one by more than one allele substitution. All D. insularis individuals showed the same cpDNA haplotype (I) , regardless of their geographic origin and multilocus genotype. The I haplotype is similar, but not identical to that found in D. romana (R). No recurrent formation of D. insularis was observed in hybrid zones between D. romana and D. sambucina , where diploid sexual hybrids (F_1; F_n, backcrosses) were detected. Available data agree with a single origin for D. insularis , which possibly occurred in the present postglacial, when D. romana and D. sambucina , expanding from their glacial refugia, came into contact. The genetic homogeneity found between D. romana and D. markusii , both from their locus classicus , indicates that the latter is a junior synonym of D. romana; on the other hand, D. romana and D. sambucina are well differentiated species ( D_Nei = 0.59).     

A fossil Cenozoic monoplacophoran

Taviani, M., Sabelli, B. & Candini, F. 1990 04 15: A fossil Cenozoic monoplacophoran. Lethaia , Vol. 23 , pp. 213–216. Oslo. ISSN 0024–1164.
A few shells of Micropilina (Mollusca, Monoplacophora) have been found in middle Pleistocene (Sicilian) epibathyal clays at Archi (Reggio Calabria, southern Italy). The species appears conchologically indistinguishable from the Recent Atlantic taxon Micropilina minuta Warén, 1989. This finding represents the first record of a Cenozoic fossil monoplacophoran.     

Morphological reinforcement,ancient introgressive hybridization and species delimitation in African stem‐borer species of the genus Sesamia Guenée (Lepidoptera: Noctuidae)

Species delimitation, an issue central to systematics and biodiversity studies, is addressed in the epunctifera group of the stem borer genus Sesamia Guenée (Lepidoptera: Noctuidae). This group is composed of four sub‐Saharan species: Sesamia poephaga Tams & Bowden; Sesamia epunctifera Hampson; Sesamia penniseti Tams & Bowden; and Sesamia poebora Tams & Bowden, the taxonomic status of which was unclear. The first species was considered a possible synonym of the second, and the third species was considered a possible synonym of the fourth. An analysis combining morphological, ecological and molecular data enables us to conclude that S. epunctifera and S. poephaga are different species, and that S. poebora is a synonym of S. penniseti. Two new species were discovered: Sesamia firmata sp.n. and Sesamia veronica sp.n. Sesamia firmata sp.n. has atypical genitalic morphology, suggesting a strong selection resulting in a reinforcement of pre‐zygotic isolation. Some specimens previously identified as S. penniseti on the basis of morphology are sisters to S. epunctifera on the mitochondrial tree, and are connected to S. penniseti on the nuclear tree. The mitochondrial distance from S. penniseti and S. epunctifera is 7.6% and 3.9%, respectively, suggesting an ancient mitochondrial introgression from S. epunctifera into S. penniseti. The possible causes of the reinforcement and introgressive hybridization are discussed. This case of mitochondrial introgression, uncommon in Lepidoptera, in which females are the heterogametic sex, may be an exception to Haldane's rule. The hybrid is assigned the rank of species and named Sesamia pennipuncta sp.n.     

Identification of candidate volatiles that affect the behavioural response of the malaria mosquito Anopheles gambiae sensu stricto to an active kairomone blend: laboratory and semi‐field assays

Anopheles gambiae Giles sensu stricto (Diptera: Culicidae) is the most important vector of human malaria in sub‐Saharan Africa, affecting the lives of millions of people. Existing tools such as insecticide‐treated nets and indoor‐residual sprays are not only effective, but also have limitations as a result of the development of resistance to insecticides and behavioural adaptations in biting time. Therefore, novel mosquito‐control tools are needed. Odour‐releasing traps have a potential for both trapping and surveillance purposes. Based on the outcome of ex vivo gene expression assays and in vivo electrophysiological assays on hundreds of volatile organic compounds, 29 ‘candidate behaviourally‐disruptive organic compounds' (cBDOCs) are selected, belonging to 10 chemical categories, to be assayed in the laboratory using dual‐choice olfactometers for the ability to modify the ‘attractiveness’ (i.e. significantly more insects being caught in the associated trap) of a basic volatile blend consisting of ammonia, lactic acid and tetradecanoic acid but without additional carbon dioxide. Compounds that either reduce or increase trap catches by the basic blend in the olfactometer experiments are tested under African conditions in choice experiments in a semi‐field facility in Kenya. The release rates of cBDOCs are determined gravimetrically to allow the calculation of aerial concentrations at the trap outlet. Aerial concentrations in the sub‐p.p.m. range are reported for the first time to influence mosquito behaviour. The results of the olfactometer and semi‐field assays generally correspond. Under semi‐field conditions, three compounds, 3‐heptanol (0.025 p.p.m.), 2‐methylpropanal (0.05 p.p.m.) and 4,5‐dimethylthiazole (0.73 p.p.m.), significantly increase trap catches relative to the basic blend consisting of ammonia, lactic acid, tetradecanoic acid and carbon dioxide. 2‐Acetylthiophene, 2‐nonanone and 2‐phenylethanol decrease the number of mosquitoes caught at all concentrations tested under semi‐field conditions. These compounds hold promise as attractants and spatial repellents to be applied in mosquito control programmes.