The roles of Neogene geology and late Pleistocene lake levels in shaping the genetic structure of the Lahontan redside shiner Richardsonius egregius (Teleostei: Cyprinidae)

Shifting drainage patterns in western North America, shaped by geological activity and changing global climates, have influenced the evolution of many aquatic taxa. We investigated the role of late Pleistocene high stands in pluvial Lake Lahontan on the genetic structure of Richardsonius egregius, a minnow endemic to the Lahontan Basin of the western Great Basin. We used the mitochondrial cytochrome b gene to generate a phylogeny and assess intraspecific genetic diversity, to estimate divergence times between clades, and to evaluate whether gene flow currently occurs. The results obtained show that R. egregius exhibits genetic divergence between eastern and western Lahontan Basin populations. Divergence time estimates show that intraspecific genetic diversification began in the Pliocene or early Pleistocene, before the pluvial lake high stands associated with the last glacial maximum. These results imply that the fluctuating water levels in pluvial Lake Lahontan had a minimal effect on shaping the genetic architecture of R. egregius. Coalescent analyses using the immigration with migration model show that contemporary gene flow between eastern and western Lahontan Basin populations does not occur. © 2011 The Linnean Society of London, Biological Journal of the Linnean Society, 2011, 104 , 163–176.     

Context‐dependent effects of mycorrhizae on herbivore density and parasitism in a tritrophic coastal study system

1. Stressful abiotic conditions and mycorrhizal fungi have both been shown to influence plant quality significantly, yet the interactive effects of these factors on relationships among plants, herbivores, and natural enemies remain unclear. 2. In this study, the results of a factorial field experiment are reported in which the effects of plant stress and mycorrhizae on density and parasitism of three herbivores of Baccharis halimifolia L. were examined. 3. Plant stress was increased by adding salt to the soil, and association with mycorrhizal fungi was increased by inoculating plant roots. 4. Inoculation with mycorrhizal fungi resulted in increased density of all three herbivore species, but the effects of mycorrhizae on parasitism varied by species and with soil salinity levels. For the gall maker Neolasioptera lathami Gagne, mycorrhizae decreased parasitism regardless of soil salinity levels. For the leaf miners Amauromyza maculosa Malloch and Liriomyza trifolii Burgess, mycorrhizae effectively negated the decrease in parasitism resulting from increased salinity. 5. The results of this study show that the effects of mycorrhizae on parasitism may be context dependent, and can be positive or negative depending upon species and environmental conditions.     

INFLUENCE OF VEGETATION,TOPOGRAPHY, AND ROADS ON COUGAR MOVEMENT IN SOUTHERN CALIFORNIA

Abstract: Models of individual movement can help conserve wide-ranging carnivores on increasingly human-altered landscapes, and cannot be constructed solely by analyzing the daytime resting locations typically collected in carnivore studies. We examined the movements of 10 female and 7 male cougars (Puma concolor) at 15-min intervals during 44 nocturnal or diel periods of hunting or traveling in the Santa Ana Mountain Range of southern California, USA, between 1988 and 1992. Cougars tended to move in a meandering path (mean turning angle ∼54°), and distance moved (mean and mode ∼300 m) was not correlated with turning angle. Cougars used a broader range of habitats for nocturnal or diel movements than for previously described daybed locations for this same population. Riparian vegetation ranked highest in a compositional analysis of vegetation types selected during movement; grassland, woodland and urbanized sites were least selected. During periods of stasis (we presume many of these were stalking locations), patterns of selection were less marked. Cougars spent a disproportionate amount of time in highly ranked vegetation types, and traveled slowest through riparian habitats and fastest through human-dominated areas. Our results suggest that travel speed may provide an efficient index of habitat selection in concert with other types of analysis. Hunting or traveling individuals consistently used travel paths that were less rugged than their general surroundings. Traveling cougars avoided 2-lane paved roads, but dirt roads may have facilitated movement. Maintenance and restoration of corridors between large wildlands is essential to conserving cougars in southern California. Our results indicate that riparian vegetation, and other vegetation types that provide horizontal cover, are desirable features in such corridors, that dirt roads should not impede cougar use of corridors, and that corridors should lie along routes with relatively gentle topography. Our results suggest that cougars do not key in on highway-crossing structures in a way that creates a prey trap. Our empirical frequency distributions of distances and turning angles, along with cougar responses to vegetation, topography, and roads can help parameterize an individually-based movement model for cougars in human-altered landscapes.     

Associations Among Breeding Birds and Gambel Oak in Southwestern Ponderosa Pine Forests

Abstract: Ponderosa pine (Pinus ponderosa) forests with Gambel oak (Quercus gambelii) are associated with higher bird abundance and diversity than are ponderosa pine forests lacking Gambel oak. Little is known, however, about specific structural characteristics of Gambel oak trees, clumps, and stands that may be important to birds in ponderosa pine-Gambel oak (hereafter pine-oak) forests. We examined associations among breeding birds and structural characteristics of Gambel oak at a scale similar in size to individual bird territories in pine-oak forests in northern Arizona and western New Mexico, USA. Avian species richness and occurrence of some bird species were associated with specific growth forms of Gambel oak. Estimated probability of Virginia's warblers (Vermivora virginiae), black-headed grosbeaks (Pheucticus melanocephalus), and red-faced warblers (Cardellina rubrifrons) occurring at points increased with increasing density of pole-sized Gambel oak 7–15 cm in diameter at breast height. We also found evidence that large Gambel oak trees (≥23 cm dbh) were associated with increased occurrence of yellow-rumped warblers (Dendroica coronata) at points. Some avian associations with oak were influenced by characteristics of ponderosa pines. For example, bird species richness was positively associated with the abundance of large Gambel oak when density of large pine trees ≥23 cm in diameter at breast height was low. Because large oak trees are rare and their numbers are thought to be declining, efforts should be made to retain and promote growth of additional oaks in this size class. Forest management practices that maintain forest openings, such as prescribed burning, could promote growth of pole-sized Gambel oak, which appears important to some bird species in pine-oak forests.     

Clustered trilobite assemblages in the Middle Devonian Hamilton Group

Clusters of well-preserved trilobites occur throughout lower and middle Paleozoic strata. This phenomenon, however, remains poorly understood. Several thin, regionally persistent beds in the Middle Devonian (Givetian) Hamilton Group of New York State display taphonomic and sedimentary features which indicate rapid burial by storm-generated clouds of fine-grained sediment. Furthermore, components in these units display little or no post-mortem disturbance and, therefore, reflect in faunal associations. These beds contain two types of clustered assemblages of the trilobites Phacops (Green), Greenops boothi (Green) and Dechenella rowi (Green). Body clusters comprise dense assemblages of three or more complete trilobite corpses. Moult clusters , in contrast, are composed of three more moult ensembles; i.e., articulated thoracopygidia in close proximity to corresponding cephala. Clusters are species-segregated and contain only a small portion of the total size range exhibited by trilobite species. Moreover, body clusters and moult clusters are morphometrically undifferentiated indicating that these two cluster modes represent related phenomena. Analogy with modern marine arthropods suggests that trilobites assembled into monospecific, age-segregated clusters and moulted prior to en masse copulation.     

Illumination of cryptic species boundaries in long-tailed shrew tenrecs (Mammalia: Tenrecidae; Microgale), with new insights into geographic variation and distributional constraints

The increasing use of mitochondrial DNA (mtDNA) to explore and test species limits among morphologically similar species is potentially compromised by phenomena poorly reflective of organismal history and speciation, including (but not limited to) stochastic lineage sorting and gene flow. In situations where molecular data are only available from a single gene or linkage partition (e.g. mtDNA), corroboration of suspected species boundaries should be sought from independent lines of evidence, such as morphology. Recent attempts to delimit species using mtDNA and morphology have either implicitly or explicitly ignored the possibility that distinct species can occur in direct sympatry throughout much of their range, presumably because such situations are believed to be rare. We examined phylogenetic relationships within the long‐tailed shrew tenrecs (Mammalia: Tenrecidae; Microgale spp.) from Madagascar. Current taxonomy recognizes two broadly sympatric species, though as many as six have been described. Given that alpha taxonomy within shrew tenrecs has been controversial, and that patterns of morphological variation can be especially difficult to assess for this group, some authors have suggested that additional cryptic species may exist. To examine this possibility, we conducted a phylogenetic study using the mitochondrial NADH dehydrogenase subunit 2 gene and a morphometric analysis of 29 craniodental, postcranial, and external measurements from a broad geographical sample of long‐tailed shrew tenrecs. The two data sets were nearly perfectly congruent in identifying four groups that can be classified as species, thereby doubling the currently recognized number of species. We present previously unrecognized distributional evidence consistent with our conclusions and provide an empirical example of how a revised understanding of species limits alters inferences of geographic variation and species coexistence, particularly with respect to fine‐scale habitat partitioning. The results of this study suggest that certain species pairs, previously assumed to be single species occupying broad elevational ranges, are actually reproductively isolated units that are partitioning their environment along elevational lines. © 2004 The Linnean Society of London, Biological Journal of the Linnean Society, 2004, 83 , 1–22.     

Variation in Nitrate Reductase Activity in Lolium

Nitrate reductase activity was studied in the leaves and rootsof Lolium perenne. Growth temperatures of 8, 15, or 20 °Cdid not affect activity, but the same temperatures during assayhad differential effects on the nitroso couple used to measureenzyme activity. Activity increased with increasing light intensity,reaching a high plateau value at around 40 W m^–2. Nitratecontent of leaves, also measured in this experiment, did notvary significantly with different light intensities. Increasingnitrate in the nutrient solution up to 0.5 mM N also increasedactivity. Adding ammonium chloride at similar levels to thenitrate caused no marked repression of activity. Removal ofnitrate from the nutrient solution decreased enzyme activitywithin 24 h. Marked diurnal fluctuations occurred in activity,apparently in response to light intensity, since the nitratelevel in the plant varied little. The enzyme activity of rootswas much less than that of leaves. In the parents and progeny from a half diallel cross, the parentalgenotypes differed significantly in activity, but the numberof families involved was too small for the regression of progenyon parents (b = 1.74) and the correlation coefficient (r = 0.44NS) to achieve significance. In this experiment a significantpositive regression was obtained between nitrate reductase activityand dry matter yield.     

Genetically and geographically isolated lineages of a tropical bat (Chiroptera: Molossidae) show demographic stability over the late Pleistocene

The newly described molossid bat, Chaerephon atsinanana Goodman et al., 2010, endemic to eastern Madagascar, shows notably high levels of phylogeographic and genetic structure compared with allopatric Chaerephon leucogaster Grandidier, 1869 from western Madagascar. Such highly significant structuring of haplotypes among altitudinally and latitudinally stratified population groups is contrary to the expected panmixia in strong flying bats. The null model of concordance in historical demographic patterns across these two Chaerephon species was not supported. Mismatch and Bayesian skyline analyses indicated ancient stable C. atsinanana populations of constant size during the last two major Pleistocene glacial periods, making retreat into and expansion from glacial refugia an unlikely explanation for such high levels of structure, in accordance with expectations for tropical bats. Analyses were consistent with post‐refugial population expansion in the less diverse and structured C. leucogaster during the end of the last Pleistocene glacial period. We hypothesise that the pronounced genetic structuring in C. atsinanana may result from female philopatry. Furthermore, differing demographic histories of the two species may have been shaped by differing climate or habitat preferences, consistent with evidence from MaxEnt ecological niche modelling, which shows differences in variables influencing the current predicted distributions. Fossil Quaternary pollen deposits further indicate greater stability in past climatic patterns in eastern versus western Madagascar. © 2012 The Linnean Society of London, Biological Journal of the Linnean Society, 2012, 106 , 18–40.