A comparison of two methods for constructing evolutionary distances from a weighted contribution of transition and transversion differences

Since the initial work of Jukes and Cantor (1969), a number of procedures have been developed to estimate the expected number of nucleotide substitutions corresponding to a given observed level of nucleotide differentiation assuming particular evolutionary models. Unlike the proportion of different sites, the expected number of substitutions that would have occurred grows linearly with time and therefore has had great appeal as an evolutionary distance. Recently, however, a number of authors have tried to develop improved statistical approaches for generating and evaluating evolutionary distances (Schoniger and von Haeseler 1993; Goldstein and Polock 1994; Tajima and Takezaki 1994). These studies clearly show that the estimated number of nucleotide substitutions is generally not the best estimator for use in reconstruction of phylogenetic relationships. The reason for this is that there is often a large error associated with the estimation of this number. Therefore, even though its expectation is correct (i.e., on average the expected number of substitutions is proportional to time- -but see Tajima 1993), it is not expected to be as useful as estimators designed to have a lower variance.      

Thirsty sea snakes forsake refuge during rainfall

Abstract Vertebrates living in dry or salty habitats spend significant amounts of time and energy maintaining their hydro‐mineral balance; any opportunity to drink fresh water should reduce such expenses. However, to find fresh water, individuals are generally forced to leave the safe and buffered conditions that prevail in their refuges. Therefore, they must face harsh environmental conditions and increased predation risks. We examined this trade‐off in the field, using a very large dataset gathered on amphibious sea snakes that confront periodic droughts. The study was carried out on different islets in the lagoon of New Caledonia. As expected, sea kraits remain concealed most of the time under rocks or within burrows during dry weather. They select precise time windows to move rapidly between the sea and the land, thereby minimizing the time spent in the open. Rainfall triggered massive disruptions of this rhythm: many snakes quickly forsook their shelter to drink in the open, and remained almost motionless until satiety. Interestingly, they adopted specific and unusual postures to drink. They perched on the top of rocks that were benefiting from running and less salty water during downpours. They also drank the droplets attached to vegetation during drizzle.     

Differential Orientation of 10T1/2 Mesenchymal Cells on Non-Uniform Stretch Environments

Non-uniform stress and strain fields are prevalent in many tissues in vivo, and often exacerbated by disease or injury. These mechanical gradients potentially play a role in contributing to pathological conditions, presenting a need for experimental tools to allow investigation of cell behavior within non-uniformly stimulated environments. Herein, we employ two in vitro cell-stretching devices (one previously published; one newly presented) capable of subjecting cells to cyclic, non-uniform stretches upon the surface of either a circular elastomeric membrane or a cylindrical PDMS tube. After 24 hours of cyclic stretch, 10T1/2 cells on both devices showed marked changes in long-axis orientation, with tendencies to align parallel to the direction of minimal deformation. The degree of this response varied depending on location within the stretch gradients. These results demonstrated the feasibility of conducting cell mechanobiology investigations with the two novel devices, while also highlighting the experimental capabilities of non-uniform mechanical environments for these types of studies. Such capabilities include robust data collection for developing mechanobiological dose-response curves, signal threshold identification, and potential spatial targeting for drug delivery.     

Which proximate factor determines sexual size dimorphism in tiger snakes?

Diverse interactions between factors that influence body size complicate the identification of the primary determinants of sexual size dimorphism. Using data from a long‐term field study (1997–2009), we examined the contributions of the main proximate factors potentially influencing sexual size dimorphism from birth to adulthood in tiger snakes (Notechis scutatus). Data on body size, body mass and body condition of neonates, juveniles and adults were obtained by mark–recapture. Frequent recaptures allowed us to monitor reproductive status, diet and food intake, and to estimate survival and growth rates in age and sex classes. Additional data from females held briefly in captivity enabled us to assess reproductive output and the body mass lost at parturition (proxies for reproductive effort). From birth to maturity, individuals of both sexes experienced similar growth and mortality rates. We found no difference in diet, feeding and survival rates between the sexes, nor between juveniles and adults. On maturity, despite comparable diet and food intake by both sexes, the high energy requirements of vitellogenesis and gestation were responsible for a depletion of body reserves and probably resulted in a marked decrease in growth rates. Males were largely exempt from such costs of reproduction, and so could grow faster than females and attain larger body sizes. The absence of niche divergence between the sexes (uniformity of habitat, lack of predators) suggests that the impact of differential energetic investment for reproduction on growth rate is probably the main proximate factor influencing sexual size dimorphism in this species. © 2011 The Linnean Society of London, Biological Journal of the Linnean Society, 2011, 103 , 668–680.     

What,if anything,is a ‘typical’ viper? Biological attributes of basal viperid snakes (genus Causus Wagler, 1830)

For many major phylogenetic radiations of organisms, the available ecological knowledge is disproportionately derived from a small minority of taxa, and sometimes from organisms that are highly atypical. Viperid snakes provide a good example of this situation; high-latitude cold-climate taxa in northern Europe (vipers) and North America (rattlesnakes) have been studied intensively, but more speciose radiations in tropical Africa, Asia, and Central America remain poorly known. We dissected > 500 specimens (six species) of night adders (genus Causus ), mostly from Cameroon (68%) in equatorial Africa, to quantify morphology, diets, and reproductive biology. By contrast to the 'slow' life-histories of cold-climate viperids, night adders feed frequently on frogs (rather than infrequently on mammals), and produce frequent large clutches of relatively small eggs (rather than infrequent small litters of relatively large live young). Thus, putatively 'typical' viperid attributes such as low fecundity, viviparity, and predation on mammals reflect adaptations to the invasion of cold environments by a small and perhaps atypical subset of viperid taxa. Our data on prey size suggest that one of the critical innovations of early viperids may have been an ability to subdue and ingest relatively large prey.  © 2006 The Linnean Society of London, Biological Journal of the Linnean Society , 2006, 89 , 575–588.