Amplification of sequence tagged sites in five avian species using heterologous oligonucleotides

Short of a complete genomic DNA sequence, sequence tagged sites (STSs) have emerged as major genomic reagents for the genetic analysis of little-studied ecologically and agriculturally important organisms. Here, we report STS developed for the turkey (Meleagris gallopavo), guinea fowl (Numidea meleagris), Japanese quail (Coturnix coturnix) and pigeon using primers specific for reference DNA sequences of two chicken (Gallus gallus) genes, aggrecan (agc1) and type X collagen (col10). Additional STSs were also developed for turkey, quail and chicken using primers specific for the human apobec-1 gene. The total length of the STSs developed was 5990, 2522, 4127, 1539 and 6600 bp for the turkey, guinea fowl, Japanese quail, pigeon and chicken, respectively. Based on splice site consensus GT and AG sequences, four of the seven agc1-based chicken STS appear to contain introns. The human gene-based STSs showed no significant sequence identity with the reference GenBank sequences. Maximum likelihood, maximum parsimony and neighbour-joining analysis of an agc1-based STS that was common to all five species showed phylogenetic relationships consistent with those previously defined using mitochondria DNA sequences and nuclear gene restriction maps. Additionally, several putative single nucleotide polymorphisms (SNPs) were detected within the STSs, including eight in the turkey, two in the quail, and two in the chicken when multiple sequences were evaluated from each species. This report describes new STSs that are resources for genetic and physical mapping and genome analysis within and among avian species. These resources should further aid in our understanding of the biology of agriculturally important but little-studied guinea fowl and turkey. This revised version was published online in July 2006 with corrections to the Cover Date.     

不同方式处理牛粪对大豆生长和品质的影响

大型养殖场粪便堆积造成严重的环境污染,对这类废弃物开展资源化利用研究具有重要生态学和经济学意义。以不施肥料处理(CK)为对照,研究了生态养殖场牛粪经腐熟(DD)和蚯蚓处理(RD)后对大豆生长与品质的影响。研究表明:生态养殖场牛粪经过两种处理后,在一定施用量范围(DD≤30 t/hm2,RD≤45 t/hm2)内,可显著增加大豆株高、分株数、干物质积累,促进植株生长,增加单株荚数、籽粒数、籽粒重,提高大豆产量(P<0.01)。施入腐熟牛粪30 t/hm2株高和单株结荚数比CK分别增加24.2 cm、63%;经蚯蚓处理后,可以提高牛粪施用量的上限,施入蚯蚓处理过的牛粪45 t/hm2时产量最高、单株结荚数最多,比CK分别增加72%和75%(P<0.01);施入蚯蚓处理过的牛粪15 t/hm2时,粗蛋白含量、蛋脂总量最高,比CK分别增加7%和6%(P<0.01)。本研究可为大型养殖场牛粪资源化利用提供科学依据。     

基于景观生态学的城市人居环境代谢研究范式与研究框架建构

人居环境建设已经成为中国城市发展和当代生态学研究的新兴命题,基于物质代谢研究成果,系统剖析城市人居环境问题,提升城市化过程的生态文明水准成为推动新型城市化发展的重要路径选择。通过对人居环境视角和社会代谢视角的城市研究进行简要回顾,认为两种视角的有机整合可以弥补各自的理论和方法论缺陷,进而凝练出新的城市生态学研究思路。利用景观生态学理论和概念体系,建构了多层次、多维度的城市人居环境代谢研究范式和基本研究框架。这一范式可以从多尺度和多维度反映城市人居环境代谢的过程特征,厘清城市人为活动和各种资源环境问题的关联关系,整合多学科的知识和技术手段,解析城市人居环境的时空动态演化过程及其驱动机制,为城市人居环境研究学科的发展创造有利条件。通过建构基于景观生态学的城市人居环境物质能量代谢研究框架,还可以有效推进城市人居环境物质能量代谢中的格局-过程-尺度耦合问题,数据采集、储存与分析问题和效应调控与过程管理问题的研究,对于完善城市代谢研究方法,促进城市人居环境建设具有重要的参考和借鉴意义。     

放牧对鄂尔多斯高原油蒿草场生物量及植被-土壤碳密度的影响

以围封保护和自由放牧油蒿草场为研究对象,通过野外调查与室内分析,研究了围封和放牧条件下沙地草场生物量和植被-土壤碳密度。结果表明:(1)自由放牧使油蒿群落中植物种类增加,但降低了植物群落盖度。自由放牧不仅导致油蒿草场地上、地下总生物量降低,也使得油蒿地上、地下生物量占群落地上、地下总生物量的比例减小。生长季自由放牧样地凋落物生物量显著大于围封保护样地(P0.05);(2)围封保护样地植被碳密度大于自由放牧样地,土壤碳密度却小于自由放牧样地,但两个样地间差异不显著(P0.05);(3)油蒿草场90%以上的碳储存于土壤中,围封保护样地和自由放牧样地油蒿草场土壤碳密度占植被-土壤系统碳密度的91%、93%;(4)围封保护油蒿草场碳密度为2.29 kg/m2,自由放牧油蒿草场碳密度为2.68 kg/m2,两个样地间差异不显著,自由放牧对油蒿草场碳密度影响不大。     

SRAP、ISSR技术的优化及在甘蓝类植物种子鉴别中的应用

将SRAP与ISSR 2种分子标记技术应用于8种甘蓝类植物（Brassica oleracea L.）的种子鉴别中。先以甘蓝（Brassica oleracea var. capitata）基因组DNA为模板,通过对SRAP、ISSR反应体系中各影响因素的逐一筛选,优化了甘蓝类植物SRAP、ISSR反应体系。进而采用30个SRAP引物组合和15个ISSR引物对白甘蓝、皱叶甘蓝、红甘蓝、羽衣甘蓝、花椰菜、青花菜、抱子甘蓝、球茎甘蓝的基因组DNA进行了PCR扩增,结果表明：M3E5与M4E5两个SRAP引物组合可以在8种甘蓝类植物之间显示较高的多态性;844和888两个ISSR引物也可在8种甘蓝类植物之间产生很好的多态,特别是844引物单独应用即可区分所有材料。     

海草床育幼功能及其机理

海草床是近岸海域中生产力极高的生态系统,是许多海洋水生动物的重要育幼场所。从生物幼体的密度、生长率、存活率和生境迁移4个方面阐述海草床育幼功能,并从食源和捕食压力两个方面探讨海草床育幼功能机理。许多生物幼体在海草床都呈现出较高的密度、生长率和存活率,并且在个体发育到一定阶段从海草床向成体栖息环境迁移。丰富的食物来源或较低的捕食压力可能是海草床具有育幼功能的主要原因,但不同的生物幼体对海草床的利用有差异,海草床育幼功能的机理在不同环境条件下也存在差异。提出未来海草床育幼功能的重点研究方向:(1)量化海草床对成体栖息环境贡献量;(2)全球气候变化和人类活动对海草床育幼功能的影响;(3)海草床育幼功能对海草床斑块效应和边缘效应的响应,以期为促进我国海草床育幼研究和海草床生态系统保护提供依据。     

中国森林生态资产价值评估

森林资源是支撑人类社会发展的重要生态资产,探索森林生态资产价值的评估方法,对合理利用和有效保护森林资源具有重要意义。运用净现值法计算了中国森林生态资产总价值为698.5万亿元,其中直接价值为7.5万亿元,包括林木价值4.5万亿元和林下产品价值3.0万亿元;间接价值为691万亿元,其中,气候调节价值量最高,占间接价值的48%;水源涵养价值量次之,占间接价值的27%。从森林生态资产总价值的分布来看,广西省、广东省和云南省位于全国前列,分别占森林生态资产总价值的10%、9%和9%。单位面积森林生态资产价值表现为海南省、浙江省和广东省较高,分别为954万元/hm2,915万元/hm2和888万元/hm2。森林生态资产价值研究为我国编制自然资源资产负债表提供理论依据,因此全面的估算中国森林生态资产价值很有意义。     

离子交换层析结合反向色谱纯化聚二氨基丙酸

ε-聚赖氨酸生产菌株Streptomyces albulus PD-1可合成一种新型非蛋白质氨基酸均聚物聚二氨基丙酸,采用离子交换层析和反向色谱,对聚二氨基丙酸的分离纯化进行研究。离子交换层析柱选用DEAE-Sepharose Fast Flow填料,50 mmol/L磷酸盐缓冲液(p H 7.5)平衡上样,含0.5 mol/L Na Cl的磷酸盐缓冲液(p H 7.5)洗脱,收集洗脱液用分子筛Sephadex G-25除去磷酸盐缓冲液。然后用C18反相色谱进一步纯化,流动相为V(甲醇)/V(0.1%磷酸)=5/95。经过离子交换层析和反向色谱,纯化得到聚二氨基丙酸纯品,回收率为39.8%,样品纯度达98.4%,为后续的聚二氨基丙酸的深入研究奠定基础。     

Shoot organogenesis from cultured seed explants of peanut (Arachis hypogaea L.) using thidiazuron

Summary Thidiazuron (TDZ) was utilized to induce adventitious shoot formation from the hypocotyl region of cultured seed explants of peanut (Arachis hypogaea L.). Excision of the radicle from seed explants was more stimulatory to shoot initiation than removal of the epicotyl alone. Removal of both the radicle and the epicotyl from seeds resulted in a 37-fold increase in the frequency of shoot production when compared to intact seeds. Half seed explants with epicotyl and radicle removed produced the greatest number of shoots per explant. Explants from mature seeds were more responsive to TDZ than immature seed-derived explants. A 1-wk exposure to 10 μM TDZ was sufficient to stimulate the initiation of adventitious shoots that subsequently developed into plants. High frequency of shoot initiation was readily induced in a variety of genotypes ofA. hypogaea and a wild peanut (A. glabrata). Plants regenerated from shoots induced by TDZ were phenotypically normal and fertile.