Extraction of chlorophylls a and b from phytoplankton using standard extraction techniques *

SUMMARY. Pigments extracted in methanol, acetone and ethanol from three cultures of green algae and one blue-green alga revealed different extraction efficiencies depending on the species, the extraction solvent used and the extraction time. Chromatographic identification and quantitative measurements of chlorophylls a and b were made from six green algae. When extraction of pigments was incomplete, chlorophyll-b was extracted faster than chlorophyll-a. This effect was more pronounced for acetone extractions, whereas methanol extractions gave the stable ratios of chlorophyll b/a after about 6–10 h. When green algae are frequent, a 6–10 h methanol extraction, without any extra manipulations, is sufficient to ensure reliable ratios of chlorophyll b/a and extraction of the major proportion of the chlorophylls without risk of induced destruction of the chlorophylls.     

Incompatibility in Dendrobium (Orchidaceae)

JOHANSEN, B., 1990. Incompatibility in Dendrobium (Orchidaceae). A unique self-incompatibility system in Dendrobium is demonstrated by more than 1700 pollination experiments. The majority (72%) of the 61 species that were self-pollinated showed self-sterility. In contrast with many other orchid genera Dendrobium showed high incompatibility in interspecific pollinations. Self-and interspecific incompatibility is expressed by flower abscission and not by inhibition of pollen germination or pollen tube growth. The incompatibility system is gametophytic and complementary, and it is likely that the auxin content in the pollinia triggers the incompatibility reaction. Microscopical investigations on the detached cells of the stigma (here called eleutherocytes) after compatible and incompatible pollinations, suggest that the incompatibility response is probably controlled by these cells.     

Linnaean fish specimens in the Swedish Museum of Natural History, Stockholm

Specimens of fish in the Naturhistoriska riksmuseet, Stockholm, which are type specimens of species described by Linnaeus are listed. A total of 94 taxa is represented in the collection. The sources for the typification of each taxon are given and the existence of type material in other collections is noted. A short history of this collection of fishes is given as it relates to confirmation of the original nature of the specimens.
Most of the taxa represented came from the collection of King Adolf Fredrik (1710–1771) and were described by Linnaeus in the Museum Adolphi Friderici Volumes 1 and 2 (1754a, 1764) or from Fredrick Hasselqvist's (1722–1752) collections in North Africa and the Mediterranean borderlands.     

Scoring functions and enrichment: a case study on Hsp90

Background  

The need for fast and accurate scoring functions has been driven by the increased use of in silico virtual screening twinned with high-throughput screening as a method to rapidly identify potential candidates in the early stages of drug development. We examine the ability of some the most common scoring functions (GOLD, ChemScore, DOCK, PMF, BLEEP and Consensus) to discriminate correctly and efficiently between active and non-active compounds among a library of ~3,600 diverse decoy compounds in a virtual screening experiment against heat shock protein 90 (Hsp90).     

结直肠癌肝转移原代肿瘤组织的异种移植动物模型的研究进展

肝是结直肠癌转移主要的靶器官,结直肠癌肝转移也是结直肠癌患者死亡的主要原因。近年来研究显示,结直肠癌肝转移原代肿瘤组织的异种移植(patient-derived tumor xenograft,PDTX)动物模型能较好的复制临床肿瘤患者的特征,其建模方法主要分为异种原位与异种异位种植模型。本文综述结直肠癌肝转移PDTX动物模型造模方法及其应用范围,以期为实验建模提供参考。     

测序深度对RNA编辑识别算法的影响

RNA编辑是重要的转录后修饰过程,目前已有多种算法用于识别RNA编辑,本文主要研究小鼠中测序深度对RNA编辑识别算法的影响,从而为RNA编辑的研究给出建议的方法. 本文使用STAR比对软件将小鼠的RNA-seq数据进行序列比对,然后使用GATK识别SNV,并用Separate Method、GIREMI、RNAEditor 3种方法识别出RNA编辑位点. 最后对3种方法识别RNA编辑位点的共同部分、识别效率、识别稳定性、识别与测序深度的关系进行分析. 结果发现3种方法识别的编辑位点数目差异大,共有位点较少,随着测序深度的增加,识别的RNA编辑位点数也在增加. 结果表明RNA编辑识别算法在小鼠中的识别性能与测序深度呈正相关.     

In comparison with nitrate nutrition,ammonium nutrition increases growth of the frostbite1 Arabidopsis mutant

Ammonium nutrition inhibits the growth of many plant species, including Arabidopsis thaliana. The toxicity of ammonium is associated with changes in the cellular redox state. The cellular oxidant/antioxidant balance is controlled by mitochondrial electron transport chain. In this study, we analysed the redox metabolism of frostbite1 (fro1) plants, which lack mitochondrial respiratory chain complex I. Surprisingly, the growth of fro1 plants increased under ammonium nutrition. Ammonium nutrition increased the reduction level of pyridine nucleotides in the leaves of wild‐type plants, but not in the leaves of fro1 mutant plants. The observed higher activities of type II NADH dehydrogenases and cytochrome c oxidase in the mitochondrial electron transport chain may improve the energy metabolism of fro1 plants grown on ammonium. Additionally, the observed changes in reactive oxygen species (ROS) metabolism in the apoplast may be important for determining the growth of fro1 under ammonium nutrition. Moreover, bioinformatic analyses showed that the gene expression changes in fro1 plants significantly overlap with the changes previously observed in plants with a modified apoplastic pH. Overall, the results suggest a pronounced connection between the mitochondrial redox system and the apoplastic pH and ROS levels, which may modify cell wall plasticity and influence growth.     

基于Methylovorus sp.J1-1基因组尺度代谢网络优化吡咯喹啉醌合成

通过构建Methylovorus sp.J1-1基因组尺度代谢网络模型(genome scale of metabolic network model,GSMM),发掘能够提升吡咯喹啉醌(pyrroloquinoline quinone,PQQ)产量的发酵策略和相关靶基因.基于其注释的基因组和生化信息,构建J1-1的G...     

单股正链RNA病毒基因组3′非编码区的高级结构与功能研究进展

单股正链RNA病毒种类繁多,其宿主涉及人、动物、植物,对人畜健康和农业经济生产都有重大的影响.病毒基因组3′UTR内的序列形成茎环、假结、TLS等高级结构,既可以作为顺式元件,又可以结合蛋白质反式因子,对病毒的转录、复制、翻译都有调控作用.简要介绍了单股正链RNA病毒代表种属的3′UTR内高级结构与功能的研究方法、主要进展和存在的问题.