Preliminary genetic linkage maps of Chinese herb Dendrobium nobile and D. moniliforme

Dendrobium is an endangered genus in the orchid family with medicinal and horticultural value. Two preliminary genetic linkage maps were constructed using 90 F₁ progeny individuals derived from an interspecific cross between D. nobile and D. moniliforme (both, 2n?=?38), using random amplified polymorphic DNA (RAPD) and intersimple sequence repeat (ISSR). A total of 286 RAPD loci and 68 ISSR loci were identified and used for genetic linkage analysis. Maps were constructed by double pseudo-testcross mapping strategy using the software Mapmaker/EXP ver. 3.0, and Kosambi map distances were constructed using a LOD score ≥ 4 and a recombination threshold of 0.4. The resulting frame map of D. nobile was 1474 cM in total length with 116 loci distributed in 15 linkage groups; and the D. moniliforme linkage map had 117 loci placed in 16 linkage groups spanning 1326.5 cM. Both maps showed 76.91% and 73.59% genome coverage for D. nobile and D. moniliforme, respectively. These primary maps provide an important basis for genetic studies and further medicinal and horticultural traits mapping and marker-assisted selection in Dendrobium breeding programmes.     

不同生境及采样部位对南方红豆杉活性成分含量的影响

采用HPLC法,对采自浙江、福建和江西7个产地以及不同坡向(阴坡和阳坡)、不同坡位(高、中、低坡位)的野生南方红豆杉[Taxus wallichiana var.mairei (Lemée et Lévl.)L.K.Fu et Nan Li]枝叶中紫杉醇、7-木糖紫杉醇和三尖杉宁碱含量进行了分析,并比较了南方红豆杉不同部位(茎皮和枝叶)和不同冠层中3种成分的含量;在此基础上对3种成分含量与环境因子(包括地理、气候及土壤因子)的相关性进行了分析.结果表明:采自阳坡的枝叶中3种成分的含量明显高于阴坡,不同坡向间紫杉醇和7-木糖紫杉醇含量差异显著(P＜0.05).采自不同坡位的枝叶中3种成分的含量均有一定差异,其中采自低坡位的枝叶中3种成分的含量均最高.不同产地间紫杉醇含量有极显著差异(P＜0.01)、7-木糖紫杉醇和三尖杉宁碱含量则有显著差异(P＜0.05);总体上看,采自福建建阳和江西景德镇的枝叶中3种成分的含量相对较高.南方红豆杉茎皮中3种成分的含量显著高于其枝叶;高冠层枝叶中3种成分的含量均高于低冠层枝叶,不同冠层间紫杉醇和7-木糖紫杉醇含量差异显著(P＜0.05).相关性分析结果表明:南方红豆杉中三尖杉宁碱含量与土壤中全N和土壤有机质含量呈极显著或显著的负相关性,与其他因子的相关性均不显著;而紫杉醇和7-木糖紫杉醇含量与所有因子均无显著的相关性;海拔与3种成分的含量均呈不显著的负相关性,提示低海拔可能有利于南方红豆杉中3种成分的合成及积累.     

Validation and dissection of quantitative trait loci for leaf traits in interval RM4923-RM402 on the short arm of rice chromosome 6

Validation and dissection of a QTL region for leaf traits in rice which has been reported in a number of independent studies were conducted. Three sets of near isogenic lines (NILs) were originated from a residual heterozygous line derived the indica cross Zhenshan 97B/Milyang 46. They were overlapping and totally covered a 4.2-Mb heterogenous region extending from RM4923 to RM402 on the short arm of rice chromosome 6. Each NIL set consisted of 10 maternal lines and 10 paternal lines. They were measured for the length, width, perimeter and area of the top three leaves and the number of spikelets per panicle, number of grains per panicle and grain weight per panicle. In NIL sets 6-4 and 6-7, differing in intervals RM4923-RM225 and RM19410-RM6119, respectively, significant variations with the enhancing alleles from the female parent ZS97 were shown for the length, perimeter and area except for the area of the third leaf from top in 6-4, but the effects were lower in 6-4 than in 6-7. No significant effects were detected for the three traits in the remaining NIL set. It was shown that flag leaf length (FLL) is the primary target of the QTLs detected. Two QTLs for FLL linked in repulsion phase were resolved, of which qFLL6.2 located in the 1.19-Mb interval RM3414-RM6917 had a major effect with the enhancing allele from Zhenshan 97B, and qFLL6.1 located in the 946.8-kb interval RM19350-RM19410 had a smaller effect with the enhancing allele from Milyang 46. The two QTLs also exerted pleiotropic effects on the yield traits.     

药物重定位的计算分析方法

全新结构药物的研发存在周期长、耗资大、风险高的问题.通过各种技术预测已有药物的新适应症,即药物重定位,可以缩短药物研发时间、降低研发成本和风险.由于疾病种类和已知药物的数量繁多,完全通过实验筛选已知药物的新用途仍然具有很高的成本.随着组学和药物信息学数据的积累,药物重定位进入到了理性设计和实验筛选相结合的阶段,药物重定位的计算预测已经成为计算生物学和系统生物学的重要研究方向.本文将目前药物重定位计算分析的策略归纳为药物-靶标关系分析、药物-药物关系分析和药物-疾病关系分析,对已报道的技术方法及其成功应用实例进行了综述.     

流感病毒抗原性变异研究进展

简要概述了流感病毒的结构特征和HA1区的功能,并着重介绍了国内外有关流感病毒HA基因抗原变异性学说及其研究进展.     

在家兔“孤立脑”制备上刺激颈迷走神经的致眠作用

在家兔半慢性“孤立脑”制备上刺激颈迷走神经,可诱发睡眠。这一诱发睡眠具有慢波睡眠的特点。定量分析的结果表明:在刺激期睡眠总量增加了34%;睡眠持续时间增加了106％;δ指数增加了89%。刺激减压神经或膈下迷走神经,则无诱发睡眠的作用,据此探讨了家兔迷走神经内具有诱发睡眠作用的传入纤维的起源。     

SARS冠状病毒实时荧光RT-PCR定量检测

为建立一种快速、准确、特异的SARS病毒RNA定量检测方法,根据复合探针荧光定量分析原理,对SARS病毒核酸进行实时荧光定量RT-PCR检测.借助计算机辅助,对SARS病毒基因靶序列以及检测引物和探针进行了优化筛选;利用体外转录SARS病毒RNA靶序列,对RT-PCR反应的镁离子浓度参数进行了优化;比较Trizol法、磁珠法、Qiagen法、煮沸法等4种方法提取RNA的检测效果,建立了样本处理方法;通过对构建的体外转录靶序列模型的检测,对本方法的灵敏度、特异性、定量线性关系、精确度等进行了评价,并通过对42例临床标本的检测对本方法的检测效果进行了评估. 通过克隆SARS病毒核酸靶序列并进行体外转录,获得了长度约1.2 kb的体外转录RNA靶序列;经优化,荧光RT-PCR反应液中的Mg²⁺浓度以4.0 mmol/L为最好;RNA提取方法采用磁珠法效果较好;本方法的检测灵敏度最低可达5个拷贝的体外转录RNA分子,特异性100%,C_t值的CV值小于5%.对临床确诊的42份SARS病人血清和漱口水标本的检测结果表明,该方法的检出率为79%,与荧光抗体检测法的符合率为70%.上述结果表明,该方法建立的荧光定量RT-PCR技术能够快速准确、特异、敏感地对SARS病毒核酸进行定量分析,为临床SARS冠状病毒RNA的检测提供了新的,更为有效的检测方法.     

基于组合探针识别的大规模细菌分类16 S rRNA基因芯片设计

随着16 S rRNA序列资源的不断丰富,以及寡核苷酸微阵列基因芯片技术的不断进步,检测复杂微生物菌落中的微生物种群构成成为可能．现有的序列特异性探针设计算法缺乏足够的覆盖度、灵活性以及效率,不能满足大规模细菌检测基因芯片的设计要求．很多组特异性探针设计算法的思路多局限于针对某个目标序列组设计唯一的组特异性探针．在很多应用场合,设计单个探针检测组内所有目标序列的目标是很难达到的．因此,设计多个探针通过组合方式进行检测是很有必要的．每个探针能特异性地检测组内一部分目标序列,通过组合就能提高覆盖率．然而,在所有可能的探针组合中找到一个优化的探针组合是很耗时的．提出了一个可行的基于相对熵和遗传算法的组合探针设计算法．     

绵羊生殖道抗菌肽

以屠宰场收集的新鲜、健康、雌性绵羊生殖器官为原材料．采用乙酸浸提、透析、Sephadex G-50凝胶过滤层析和反相高效液相色谱(RP-HPLC)等方法分离纯化绵羊生殖道抗菌肽．以G+、G-和真菌为抗菌活性检测指示菌株,利用薄层琼脂糖孔穴扩散法、微量肉汤稀释法进行抗菌活性检测．对分离纯化所得纯品进行分子质量质谱测定、纯度鉴定、N端测序,并对其性质进行研究．结果表明：分离纯化所得两个绵羊生殖道抗菌肽分子质量分别为4820.47 u和4012.5 u,N端部分氨基 酸序列分别为AYVLDEPKP和YDSGA．对G+细菌(S. aureus ATCC2592、Streptococcu ATCC55121)、G-细菌(E． coli ATCC25922)、真菌(C． albicans ATCC2002)均具有良好的抑菌活性．对家兔红细胞无溶血活性,对人血液凝固无影响．目前未见有从绵羊生殖道分离纯化得到抗菌肽的报道,并且这一研究结果进一步证实抗菌肽在多种动物生殖道天然免疫防御方面起着重要作用．