Immunological microenvironment gene expression in patients with diffuse large B cell non Hodgkin lymphoma

BackgroundNon Hodgkin lymphoma (NHL) is one of the immune system cancers. The occurrence and progression of malignant lymphomas depends on cellular pathways deregulation. Understanding the relationship between the immune system at the genetic level and malignant transformation is critical to reach its etiology.ObjectiveThe aim of this work is to evaluate the expression of five immune related genes (PD-1, FOXP3, GrA, GrB and CD11c) in patients with diffuse large B cell non Hodgkin lymphoma (DLBCL).Materials and methodsThis study was conducted on fifty patients with DLBCL and fifty sex and age matched apparently healthy subjects. The participants were subjected to these laboratory investigations: complete blood count, serum lactate dehydrogenase and β2microglobulin (β₂M) levels and determination of PD-1, FOXP3, GrA, GrB and CD11c gene expressions.ResultsThe results of this study revealed that PD-1, FOXP3, GrA, GrB and CD11c gene expressions were significantly increased in DLBCL patients.ConclusionPatients with DLBCL have variablePD-1, FOXP3,GrA, GrB and CD11cgene expressions levels, which are correlated with the overall survival (OS) indicating that they can be good predictors of outcome in these patients.     

A pilot study on the relation between irisin single-nucleotide polymorphism and risk of myocardial infarction

BackgroundMyocardial infarction (MI) is the major cause of death and disability worldwide. Many recent studies revealed the relationship between circulating irisin levels, endothelial dysfunctions and subclinical atherosclerosis in adult patients.ObjectivesThe aim of this study was to investigate the distribution of Irisin gene single nucleotide polymorphism in patients with MI and its association with other clinical and laboratory variables in these patients.Patients and methodsThis study was carried out in 100 patients with MI, and 100 healthy subjects served as controls. All studied subjects underwent laboratory investigations, including measurement of total cholesterol (TC), triglycerides (TG), low-density lipoprotein cholesterol (LDL-c) high-density lipoprotein cholesterol (HDL-c), creatinine kinase-MB (CK-MB), troponin I (TnI) and genotyping of rs 3480 and rs726344 of Irisin genes using the TaqMan Allelic Discrimination assay technique.ResultsThere was a significant difference of Irisin genotypes in patients when compared to controls. By estimating odd ratio (OR) an association was found between G allele of rs 3480 and A allele of rs726344with increase the risk of developing myocardial infarction by 4.03 and 3.47 fold respectively. GG of rs 3480 carriers had significantly increased Troponin I and triglyceride levels, while GA carriers of rs726344 had significantly increased CKMB, Total cholesterol, LDLc, HDLc, troponin I and triglyceride levels compared with other genotypes.ConclusionG allele of rs 3480 and A allele of rs726344can considered as genetic risk factors for MI; these findings could have an impact on preventive strategy for myocardial infarction.     

Mitochondrial mismatch analysis is insensitive to the mutational process

Mismatch distributions are histograms showing the pattern of nucleotide (or restriction) site differences between pairs of individuals in a sample. They can be used to test hypotheses about the history of population size and subdivision (if selective neutrality is assumed) or about selection (if a constant population size is assumed). Previous work has assumed that mutations never strike the same site twice, an assumption that is called the model of infinite sites. Fortunately, the results are surprisingly robust even when this assumption is violated. We show here that (1) confidence regions inferred using the infinite- sites model differ little from those inferred using a model of finite sites with uniform site-specific mutation rates, and (2) even when site- specific mutation rates follow a gamma distribution, confidence regions are little changed until the gamma shape parameter falls well below its plausible range, to roughly 0.01. In addition, we evaluate and reject the proposition that mismatch waves are produced by pooling data from several subdivisions of a structured population.      

Responses of net ecosystem CO2 exchange in managed grassland to long-term CO2 enrichment, N fertilization and plant species

The effects of elevated pCO₂ on net ecosystem CO₂ exchange were investigated in managed Lolium perenne (perennial ryegrass) and Trifolium repens (white clover) monocultures that had been exposed continuously to elevated pCO₂ (60 Pa) for nine growing seasons using Free Air CO₂ Enrichment (FACE) technology. Two levels of nitrogen (N) fertilization were applied. Midday net ecosystem CO₂ exchange (mNEE) and night-time ecosystem respiration (NER) were measured in three growing seasons using an open-flow chamber system. The annual net ecosystem carbon (C) input resulting from the net CO₂ fluxes was estimated for one growing season. In both monocultures and at both levels of N supply, elevated pCO₂ stimulated mNEE by up to 32%, the exact amount depending on intercepted PAR. The response of mNEE to elevated pCO₂ was larger than that of harvestable biomass. Elevated pCO₂ increased NER by up to 39% in both species at both levels of N supply. NER, which was affected by mNEE of the preceding day, was higher in T. repens than in L. perenne. High N increased NER compared to low N supply. According to treatment, the annual net ecosystem C input ranged between 210 and 631 g C m⁻² year⁻¹ and was not significantly affected by the level of pCO₂. Low N supply led to a higher net C input than high N supply. We demonstrated that at the ecosystem level, there was a long-term stimulation in the net C assimilation during daytime by elevated pCO₂. However, because NER was also stimulated, net ecosystem C input was not significantly increased at elevated pCO₂. The annual net ecosystem C input was primarily affected by the amount of N supplied.     

Structure and characterization of a novel chicken biotin-binding protein A (BBP-A)

Background  

The chicken genome contains a BBP-A gene showing similar characteristics to avidin family genes. In a previous study we reported that the BBP-A gene may encode a biotin-binding protein due to the high sequence similarity with chicken avidin, especially at regions encoding residues known to be located at the ligand-binding site of avidin.     

Exploiting Nonlinear Recurrence and Fractal Scaling Properties for Voice Disorder Detection

Background  

Voice disorders affect patients profoundly, and acoustic tools can potentially measure voice function objectively. Disordered sustained vowels exhibit wide-ranging phenomena, from nearly periodic to highly complex, aperiodic vibrations, and increased "breathiness". Modelling and surrogate data studies have shown significant nonlinear and non-Gaussian random properties in these sounds. Nonetheless, existing tools are limited to analysing voices displaying near periodicity, and do not account for this inherent biophysical nonlinearity and non-Gaussian randomness, often using linear signal processing methods insensitive to these properties. They do not directly measure the two main biophysical symptoms of disorder: complex nonlinear aperiodicity, and turbulent, aeroacoustic, non-Gaussian randomness. Often these tools cannot be applied to more severe disordered voices, limiting their clinical usefulness.     

The Effect of Heat Stress on Wheat Leaf and Ear Photosynthesis

The effect of heat-hardening on carbon exchange rate per unitarea (CER) of flag leaves, whole ears, and ears with the awnsremoved, was measured in hexaploid (Triticum aestivum L.) andtetraploid (T. turgidum L. and T. dicoccoides) wheat varieties.The CER for awns was calculated by the difference. For the non-hardened hexaploid cv. ‘H-895’ the CERfor the leaves and glumes had an optimum temperature of 25°C.By contrast, the CER for the awns increased from 25°C to32°C, indicating an optimum at 32°C or more. Heat-hardeningdecreased the CER of leaves and glumes at the optimum temperature,but increased the CER especially in leaves at supra-optimaltemperatures. Thus, leaf CER in hardened plants became essentiallyindependent of temperatures between 25°C and 32°C. AwnCER was little affected by heat-hardening. For all 12 varieties, leaf and ear CER was smaller in hardenedplants at 30°C than in non-hardened plants at 22°C.Leaf and ear CER measured at 30°C differed significantlybetween varieties within a species. Whole ear CER at 30°Cwas negative in most varieties although the calculated valuefor the awns was positive. Thus, the high temperature optimumfor CER of the awns was a major factor in the variation amongwheat varieties in tolerance of ear CER to heat. The biochemicalattributes of the photosynthetic mechanism in awns responsiblefor the high temperature optimum were already present in wildtetraploid wheat. There was a positive correlation across allvarieties between ear CER at 30°C and the percentage ofawns in total ear area (r = 0930, P = 0 This together with previousresults (Blum, 1985a), suggests that a large amount of awnsin the ear is a sensible selection index in wheat for improvedproduction in hot, dry environments. Key words: Carbon exchange rate, photosynthesis, awns, heat, stress, wheat, breeding     

Effect of Osmotic Stress on the Rate of Release of Acid Phosphatase by Leishmania donovani Promastigotes

ABSTRACT. The release of soluble acid phosphatase from Leishmania donovani promastigotes in axenic culture medium is altered by osmolarity changes: Hypoosmotic conditions increase its release whereas hyperosmotic ones decrease the release of acid phosphatase.     

Stomatal regulation in a changing climate: a field study using Free Air Temperature Increase (FATI) and Free Air CO2 Enrichment (FACE)

This study investigates effects of climate warming (+ 2.5°C ubove ambient) and elevated CO₂ concentration (600 μmol mol^?1) on the stomatal functioning and the water relations of Lolium perenne, using Free Air Temperature Increase (FATI) and Free Air CO₂ Enrichment (FACE). Compared to growth at ambient temperature, whole-season temperature increase reduced leaf stomatal conductance, but only at the top of the canopy (-14.6 and -8.8% at ambient and elevated CO₂, respectively). However, because higher canopy temperature raised the leaf-to-air vapour pressure difference, leaf transpiration rate increased (+28% at ambient and +48% at elevated CO₂) and instantaneous leaf water use efficiency, derived from short-term measurements of assimilation and transpiration rate, declined (-11% at ambient and -13% at elevated CO₂). Nevertheless, at the stand level, growth at + 2.5°C reduced transpiration due to fewer tillers per plant and a smaller leaf area per tiller. This sparser vegetation was also more closely coupled to the atmosphere and maintained a drier internal microclimate. To assess whether the stomatal behaviour observed in this experiment could be explained by prevailing concepts of stomatal functioning, three models were applied (Cowan 1977; Ball, Woodrow & Berry 1987; Leuning 1995). The latter model accounted for the highest proportion of variability in the data (58%) and was insensitive to CO₂ and temperature regime, which suggests that the principles of stomatal regulation are not affected by changes in CO₂ or climate.