Associations with habitat versus geographic cohesiveness: size and shape of Bembicium vittatum Philippi (Gastropoda: Littorinidae) in the Houtman Abrolhos Islands

In the Houtman Abrolhos Islands, Western Australia, the direct-developing littorine snail Bembicium vittatum occupies a wide range of habitats, which are replicated across the three major groups of islands. Earlier studies showed that allozyme similarities followed patterns related to gene flow, independent of habitat, providing an excellent opportunity to test for associations with habitat for traits more likely to be adaptively important. As the first test for adaptive divergence, we examined variation in size and shape of shells among 131 populations in the Abrolhos Islands. Two-fold variations were found in width of adults, the allometric coefficient of height with width, and shell height scaled to a standard width. Quantification of habitat characteristics was summarized by principal components analysis. In contrast with the patterns of divergence for allozymes, shell height, adjusted for width, was strongly associated with habitat: flatter shells are found on exposed, vertical shores, while domed, more globose shells predominate in sheltered sites. This association was stronger for shape of adult-sized snails than for height scaled to an arbitrary size, highlighting the importance of using biologically relevant measures. Even highly isolated and allozymically less variable populations in tidal ponds conformed to this association. Because differences in shape are highly heritable in B. vittatum , this association of shape with habitat, independent of patterns of gene flow, indicates local adaptation. Shell size also varied with habitat, but because growth rate is highly plastic, variation in size cannot be interpreted simply in terms of adaptation. Nevertheless, the pattern of variation indicates that, within realized limits, larger size is generally favourable, but may be constrained by local conditions. Thus, variation in size signals the potential for adaptive divergence of life histories among the many, isolated populations of this species.     

A conformational switch‐based aptasensor for the chemiluminescence detection of microRNA

A simple microRNA (miRNA) aptasensor has been developed combining the conformational switch of a streptavidin aptamer and isothermal strand displacement amplification. In the presence of its target miRNA, the allosteric molecular beacon (aMB) probe immobilized on the plate can be ‘switched on' and release the streptavidin aptamer. At the same time, Klenow fragment (3′→5′ exo‐) is utilized to initiate DNA‐strand displacement, which starts the target recycling process. Based on the aptamer' high binding affinity and subsequent catalytic chemiluminescence (CL) detection, this CL strategy is highly specific in distinguishing mature miRNAs in same family. It exhibits a dynamic range of four orders of magnitude with a detection limit of 50 fM, and shows great potential for miRNA‐related clinical practices and biochemical research.     

Assessment of antioxidant activities in roots of Miswak (Salvadora persica) plants grown at two different locations in Saudi Arabia

Traditionally, in Middle Eastern countries, many cultures use chewing sticks of arak for medicinal purposes especially, for oral cleanliness care. It was used by Muslims for treatment of teeth and highly recommended to be used by Muslims during the whole day. Therefore, the present work aimed to determine the total phenolic content and total flavonoids in two Miswak extracts obtained from arak roots collected from two different localities in Saudi Arabia. They were extracted with aqueous ethanol (80%) and used to estimate in vitro their antioxidative abilities. The new findings showed that the two tested extracts contained significantly different amounts of both total phenolic content and total flavonoids. According to the increase of total phenolic contents and total flavonoids obtained from the two extracts, Miswak collected from the southern region was found to contain more contents than those collected from the middle region. The results of antioxidant activities of Miswak root extract obtained by using different in vitro methods were varied depending on the technique used. According to the malondialdehyde (MDA) method, hydrogen peroxide (H₂O₂) scavenging ability and 1,1-diphenyl-2-picrylhydrazyl (DPPH) methods, the two Miswak extracts exhibited to have high to very high antioxidant activities. Mostly, the values of antioxidant activities of Southern region have been shown to be always the highest.     

Population structure and geographical subdivision of the Leishmania major vector Phlebotomus papatasi as revealed by microsatellite variation

Abstract Multi‐locus microsatellite typing (MLMT) has been employed to infer the population structure of Phlebotomus papatasi (Scopoli) (Diptera: Psychodidae) sandflies and assign individuals to populations. Phlebotomus papatasi sandflies were collected from 35 sites in 15 countries. A total of 188 P. papatasi individuals were typed using five microsatellite loci, resulting in 113 different genotypes. Unique microsatellite signatures were observed for some of the populations analysed. Comparable results were obtained when the data were analysed with Bayesian model and distance‐based methods. Bayesian statistic‐based analyses split the dataset into two distinct genetic clusters, A and B, with further substructuring within each. Population A consisted of five subpopulations representing large numbers of alleles that were correlated with the geographical origins of the sandflies. Cluster B comprised individuals collected in the Middle East and the northern Mediterranean area. The subpopulations B1 and B2 did not, however, show any further correlation to geographical origin. The genetic differentiation between subpopulations was supported by F statistics showing statistically significant (Bonferroni‐corrected P < 0.005) values of 0.221 between B2 and B1 and 0.816 between A5 and A4. Identification of the genetic structure of P. papatasi populations is important for understanding the patterns of dispersal of this species and to developing strategies for sandfly control.     

Morphometric and molecular differentiation of Phlebotomus (Phlebotomus) sandflies

The closely related sandfly species of the subgenus Phlebotomus namely, Phlebotomus papatasi (Scopoli, 1786), Phlebotomus duboscqi Neveu‐Lemair, 1906 and Phlebotomus bergeroti Parrot, 1934 (Diptera: Psychodidae), are major vectors of Leishmania major (Kinetoplastida: Trypanosomatidae), the causative agent of cutaneous leishmaniasis in the Old World. Although allopatric in most of their distribution, the three species exist sympatrically in many places in central and eastern Sudan. Males of the three species can be distinguished using morphological characters; however, females are much harder to identify, thus complicating epidemiological studies. We carried out a morphometric and a molecular study to determine reliable morphological features and develop a polymerase chain reaction (PCR) assay for distinguishing females of these species. Males and females from each species were collected from sites in Sudan, East Africa and from one site in Mali, West Africa. Males were analysed morphologically and 20 characters and 10 character ratios were used in a stepwise discriminant analysis. This led to the identification of four characters with high discriminant loading scores sufficient for accurate male species identification. Male DNA was then used for the development of a PCR‐based species diagnostic based on the second internal transcribed spacer (ITS2) of the ribosomal DNA. A set of four primers was developed to generate fragment sizes that are specific to each species and can reliably identify females as well as hybrid DNA. Both the morphometric and the molecular findings of this study have important applications for studies of the epidemiology of cutaneous leishmaniasis.     

Oxygen Transport in the Avian Egg at High Altitude

Oxygen transport to avian embryo tissues occurs by three steps,two of which are driven by diffusion. This results in a seriesof stepwise decrements in PO₂ between atmosphere and tissue.The PO₂ decrements for embryos of the domestic fowl incubatedat different altitudes are used here to examine potential adaptationsto hypobanc hypoxia. With exposure to moderate hypoxia embryosof the domestic fowl appear to maintain adequate tissue oxygenation.Adaptive adjustments in the shell, shell membranes and chorioallantoiscomplex were not observed. However, hemoglobin O₂ affinity wasincreased and preliminary evidence suggests a redistributionof blood flow to maintain adequate oxygenation in higher priorityareas of embryonic tissue. At severe hypoxia, embryos of thedomestic fowl show decreased O₂ consumption, embryo mass andlengthened incubition period. Thus at severe hypoxin the embryoof the domestic fowl does not appear to provide a realisticmodel. Evidence from avian embryos of species native to highaltitude suggest that they are able to maintain adequate tissueoxygenation even at severe hypoxia. Preliminary evidence suggeststhat some of the blood vascular system and tissue level adaptationspresent in the chicken embryo are also present in species nativeto high altitude. One of these, an increase in embryonic hemoglobin-O₂affinity which is physiologically mediated in the chicken embryois genetically-based in the embryo of the native high-altitudespecies.     

Winter and summer upwelling modes and their biological importance in the California Current Ecosystem

Analysis of monthly coastal upwelling intensities revealed two seasonal and biologically relevant upwelling ‘modes’ in the California Current Ecosystem (CCE). The first mode reflected upwelling during the summer months and was characterized by low‐frequency (multidecadal) processes, including significant (P<0.01) linear trends at some latitudes. In contrast, the second mode reflected wintertime upwelling and was defined by higher‐frequency variability associated with the North Pacific High and El Niño Southern Oscillation events. These modes were compared with multidecadal time series of splitnose rockfish (Sebastes diploproa) otolith growth, yelloweye rockfish (S. ruberrimus) otolith growth, Chinook salmon (Oncorhynchus tshawytscha) scale growth, and indices of Cassin's auklet (Ptychoramphus aleuticus) and common murre (Uria aalge) reproduction in the central‐northern CCE. In redundancy and correlation analyses, salmon growth and Cassin's auklet fledgling success associated with the summer upwelling mode while all other time series associated with the winter upwelling mode, indicating that CCE biology was differentially sensitive to these seasonal upwelling patterns. Thus, upwelling occurred in unrelated seasonal modes with contrasting trends, atmospheric forcing mechanisms, and impacts on the biology of the CCE, underscoring the importance of seasonality when evaluating ecosystem response to climate variability and change.     

Modeling to discern nitrogen fertilization impacts on carbon sequestration in a Pacific Northwest Douglas‐fir forest in the first‐postfertilization year

This study investigated how nitrogen (N) fertilization with 200 kg N ha^?1 of urea affected ecosystem carbon (C) sequestration in the first‐postfertilization year in a Pacific Northwest Douglas‐fir (Pseudotsuga menziesii) stand on the basis of multiyear eddy‐covariance (EC) and soil‐chamber measurements before and after fertilization in combination with ecosystem modeling. The approach uses a data‐model fusion technique which encompasses both model parameter optimization and data assimilation and minimizes the effects of interannual climatic perturbations and focuses on the biotic and abiotic factors controlling seasonal C fluxes using a prefertilization 9‐year‐long time series of EC data (1998–2006). A process‐based ecosystem model was optimized using the half‐hourly data measured during 1998–2005, and the optimized model was validated using measurements made in 2006 and further applied to predict C fluxes for 2007 assuming the stand was not fertilized. The N fertilization effects on C sequestration were then obtained as differences between modeled (unfertilized stand) and EC or soil‐chamber measured (fertilized stand) C component fluxes. Results indicate that annual net ecosystem productivity in the first‐post‐N fertilization year increased by～83%, from 302 ± 19 to 552 ± 36 g m^?2 yr^?1, which resulted primarily from an increase in annual gross primary productivity of～8%, from 1938 ± 22 to 2095 ± 29 g m^?2 yr^?1 concurrent with a decrease in annual ecosystem respiration (R_e) of～5.7%, from 1636 ± 17 to 1543 ± 31 g m^?2 yr^?1. Moreover, with respect to respiration, model results showed that the fertilizer‐induced reduction in R_e (～93 g m^?2 yr^?1) principally resulted from the decrease in soil respiration R_s (～62 g m^?2 yr^?1).