Assessment of UK hops for the occurrence of hop latent and hop stunt viroids

The occurrences and distributions of hop stunt (HSVd) and hop latent (HLVd) viroids were assessed by a nucleic acid hybridisation assay, using samples from 476 commercial hop plantings in the UK. These samples represented about half of the UK production.
HLVd was detected in c. 17% of the samples, with infection in different cultivars ranging from 0% to 89%. This viroid was found in all cultivars sensitive to Verticillium wilt except cv. Sunshine, an old cultivar grown on only one farm in the UK. Two minor wilt-tolerant cultivars were also found to be infected at low frequencies, but the main commercially-important wilt-tolerant cultivars were all uninfected. A high proportion of the nuclear stock mother plants in the "A +" house at the Institute of Horticultural Research Dept of Hops Research, Wye College were infected. Circumstantial evidence, based on the planting dates of infected gardens, suggests that infection became established in the hop propagation system during the late 1970s and that there was a major increase in the prevalence of HLVd as a result. Whether this contamination of propagating material arose because of spread from long-standing infections or because the viroid was newly introduced into the UK, is not known.
All samples were also tested for HSVd but this viroid was not detected in any UK hop material.     

Human Health Risk Assessment at a Depleted Uranium Site

Human health risk assessments for depleted uranium are common for Department of Defense (DOD) sites since the metal has various military uses. At a training and experimental site, DU was evaluated in soil in order to make decisions regarding cleanup and future use of the site. At this site, concentrations were found to be protective of human health; DU is less toxic than uranium. Other data important to this decision were the type of receptors likely to be exposed, the amount of time spent by the receptor on-site, the acceptable yearly radiation dose, and other non-radiation associated effects to the kidney. Total uranium concentrations in soil were calculated for the 90th percentile and the 50th percentile. The highest soil concentration used as an exposure point was 3500 ug/g (90th percentile). Short exposure timeframes contributed to the risk results.     

Characterization of dinucleotide microsatellite loci in the living fossil tadpole shrimp Triops cancriformis (Crustacea Branchiopoda Notostrace)

Five dinucleotide markers were obtained from a microsatellite genomic library of the tadpole shrimp Triops cancriformis. The number of alleles at each locus was low (maximum three alleles) but all loci were polymorphic. The presence of null alleles could not be disregarded. Heterozygosity levels were indicative of selfing in the studied populations whose real sexuality will be further tested using these markers.     

Somatic mutations as a useful tool for studying clonal dynamics in trees

The seemingly eternal cycles of clonal growth in many tree species, with members of Populus (aspen, poplars, cottonwoods and the like) featuring most prominently, provoke a number of questions on the interface between ecology, genetics and forestry. In this issue, two groups present their approaches to clonal dynamics ( Ally et al. 2008 and Mock et al. 2008 ), using microsatellite (or simple sequence repeat, SSR) variation in P. tremuloides. Ally et al. developed and applied a model for using microsatellites to estimate clone age and infer other community characteristics. Mock et al. used fewer microsatellites but in more individuals, to examine clone size and distribution across the landscape.     

Habitat selection as a source of inter‐specific differences in recruitment of two diadromous fish species

• 1 For aquatic species with highly dispersive offspring, the addition of new individuals into an area (recruitment) is a key process in determining local population size so understanding the causes of recruitment variability is critical. While three general causative mechanisms have been identified (the supply of individuals, habitat selection and mortality), we have a limited understanding of how variation in each is generated, and the consequences this may have for the spatial and temporal distribution of recruits.
• 2 We examined whether active habitat selection during settlement could be the cause of variability in populations of two diadromous fish species using a field survey and laboratory‐based choice experiments. If larval behaviour is important, we predicted there would be inter‐specific differences in abundance between sites during the survey, and that larvae would prefer water collected from sites with higher conspecific abundances during the experiments.
• 3 During the field survey, significant differences were detected between two rivers (the Cumberland and Grey), with one species (Galaxias maculatus) found in higher abundances at one site (the Cumberland River) while comparable numbers of a closely related species (Galaxias brevipinnis) were caught at both sites. Laboratory choice experiments were conducted to determine whether larval preferences during settlement could be the cause of these differences. G. maculatus larvae showed a preference for freshwater over saltwater, indicating that the fish may be responding to reduced salinities around river mouths during settlement. The results of a second experiment were consistent with the notion that larval preferences could be the mechanism driving differences in the populations of the two rivers, with G. maculatus preferring water collected from the Cumberland River while G. brevipinnis did not prefer water from either river.
• 4 These results demonstrate that active habitat selection may be important in establishing spatial patterns of larvae at settlement, and that multiple cues are likely to be involved. This study also demonstrates that the behaviours exhibited by individuals can strongly influence the structure and dynamics of populations of aquatic species with complex life cycles.

     

Natural hybridization in Cardamine (Brassicaceae) in the Pyrenees: evidence from morphological and molecular data

While researching Cardamine (Brassicaceae) in the Pyrenees, putative hybrid plants were found at two natural sites. Pollen grain viability, AFLP, and multivariate morphometric analyses were performed in order to assess the plants' presumed hybrid origin, establishing that natural hybridization between the diploids C. crassifolia and C. amara ssp. pyrenaea had occurred. A new diploid nothospecies, C. × enriquei (2 n = 2x = 16), is described. Examination of 18 morphological characters showed the intermediacy of the hybrid between the parental taxa in most characters. AFLP analyses of C. amara ssp. amara , ssp. austriaca , ssp. olotensis and C. raphanifolia , demonstrated the close position of the hybrid to C. crassifolia , and revealed that the highest number of markers were shared with the parents. Polymorphism found in the AFLP pattern of the hybrid suggested recurrent origin, segregation and/or backcrosses, although assessment of pollen viability indicated high male sterility. The hybridization event reported here represents the second documented case between the C. pratensis group and C. amara . An account of the nomenclature of C. crassifolia is also presented, including lectotypification of relevant names.  © 2002 The Linnean Society of London, Botanical Journal of the Linnean Society , 2002, 139 , 275–294.     

The influence of predatory fish on mayfly drift: extrapolating from experiments to nature

1. A knowledge of how individual behaviour affects populations in nature is needed to understand many ecologically important processes, such as the dispersal of larval insects in streams. The influence of chemical cues from drift‐feeding fish on the drift dispersal of mayflies has been documented in small experimental channels (i.e. < 3 m), but their influence on dispersal in natural systems (e.g. 30 m stream reaches) is unclear. 2. Using surveys in 10 Rocky Mountain streams in Western Colorado we examined whether the effects of predatory brook trout (Salvelinus fontinalis) on mayfly drift, that were apparent in stream‐side channels, could also be detected in natural streams. 3. In channel experiments, the drift of Baetis bicaudatus (Baetidae) was more responsive to variation in the concentration of chemical cues from brook trout than that of another mayfly, Epeorus deceptivus (Heptageniidae). The rate of brook trout predation on drifting mayflies of both species in a 2‐m long observation tank was higher during the day (60–75%) but still measurable at night (5–10%). Epeorus individuals released into the water column were more vulnerable to trout predation by both day and night than were Baetis larvae treated similarly. 4. Drift of all mayfly taxa in five fishless streams was aperiodic, whereas their drift was nocturnal in five trout streams. The propensity of mayflies to drift was decreased during the day and increased during the night in trout streams compared with fishless streams. In contrast to the channel experiments, fish biomass and density did not alter the nocturnal nature nor magnitude of mayfly drift in natural streams. 5. In combination, these results indicate that mayflies respond to subtle differences in concentration of fish cues in experimental channels. However, temporal and spatial variation in fish cues available to mayflies in natural streams may have obscured our ability to detect responses at larger scales.     

Assembly rules operate only in equilibrium communities: Is it true?

Very little is known of how disturbance affects community assembly rules. We examine this in three disturbance states in each of two ski areas on southern New Zealand mountains. Theory suggests that a community will become progressively more spatially organized during recovery from disturbance. Firstly, different patches of the community should become more similar through time, but this was seen in only one of the two areas and even then only examining species presence/absence. Secondly, it has been suggested that spatial autocorrelation will be stronger in less‐disturbed conditions, that is, there will be a stronger pattern of more distant patches being more dissimilar in species composition. This was generally borne out. However, the method indicated more point randomness in less‐disturbed sites. Assembly rules might be seen in species abundances. Previous work has found maximum evenness of abundances in later successional communities, but the pattern here was the opposite: high evenness in the most disturbed communities. The literature suggests that in undisturbed communities the distribution of species abundances (relative abundance distribution) will be general lognormal, and we further argue that the identity of the species across occupying rank positions in that distribution should be more consistent (rank consistency). Both predictions were borne out in one area, but neither in the other. Many workers suggest that niche‐based assembly rules will be stronger in undisturbed communities. However, there was only weak evidence of constancy in species richness. Local species assemblages tended to contain a relatively constant representation from different morphological/taxonomic guilds (guild proportionality) and this was significant in some tests, but contrary to theory this effect occurred mainly in the most disturbed sites. It is concluded that there is only limited truth in the frequent assumption that community structure is stronger in undisturbed, equilibrium communities.