A microbial metabolite remodels the gut-liver axis following bariatric surgery

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Focusing on the ethnobotanical uses of plants in Mersin and Adana provinces (Turkey)

This paper presents the result of a study on the herbal drugs in the herbal markets in Mersin and Adana. The data were collected through direct interviews with herbalists and customers between 2002–2005 and the popular medicinal plants were investigated. A total of 107 species belonging to 56 families were investigated and the samples were listedwith their local and Latin names. The investigation includes cross-checking the disorders and their herbal cures and their recommended use stated by the local herbalists, by the parts used, and by the preparations. The cultivated species and their ethno botanical uses, are documented and extensive inventory is presented. As a result, we observed that these plants are used especially for intestinal digestive disorders of the gastrointestinal tract, (21.68%), respiratory tract system disorders (10.43%), heart-blood circulatory system disorders (8.48%), urinary tract system disorders (7.70%), skin disorders (6.48%) and others.     

Gender biased neuroprotective effect of Transferrin Receptor 2 deletion in multiple models of Parkinson’s disease

Alterations in the metabolism of iron and its accumulation in the substantia nigra pars compacta accompany the pathogenesis of Parkinson’s disease (PD). Changes in iron homeostasis also occur during aging, which constitutes a PD major risk factor. As such, mitigation of iron overload via chelation strategies has been considered a plausible disease modifying approach. Iron chelation, however, is imperfect because of general undesired side effects and lack of specificity; more effective approaches would rely on targeting distinctive pathways responsible for iron overload in brain regions relevant to PD and, in particular, the substantia nigra. We have previously demonstrated that the Transferrin/Transferrin Receptor 2 (TfR2) iron import mechanism functions in nigral dopaminergic neurons, is perturbed in PD models and patients, and therefore constitutes a potential therapeutic target to halt iron accumulation. To validate this hypothesis, we generated mice with targeted deletion of TfR2 in dopaminergic neurons. In these animals, we modeled PD with multiple approaches, based either on neurotoxin exposure or alpha-synuclein proteotoxic mechanisms. We found that TfR2 deletion can provide neuroprotection against dopaminergic degeneration, and against PD- and aging-related iron overload. The effects, however, were significantly more pronounced in females rather than in males. Our data indicate that the TfR2 iron import pathway represents an amenable strategy to hamper PD progression. Data also suggest, however, that therapeutic strategies targeting TfR2 should consider a potential sexual dimorphism in neuroprotective response.Subject terms: Metals, Ageing, Neurological disorders     

Digital differential display tools for mining microsatellite containing organism,organ and tissue

Uniformly repeated DNA sequences in genomes known as tandem repeats are one of the most interesting features of many organisms analyzed so far. Among the tandem repeats, microsatellites have attracted many researchers since their associations in several human diseases. The discovery of tandem repeats in the expressed sequence tags (ESTs) or in the cDNA libraries contributed to new ideas and tools for evolutionary studies. With the advent of new biotechnological tools the number of ESTs deposited in databases is rapidly increasing. Therefore, new informative bioinformatics tools are needed to assist the analysis and interpretation of these tandem repeats in ESTs and in other type of DNAs. In the present study we report two new utility tools; Organism Miner and Keyword Finder. Organism Miner utility collects, sorts, splice and provides statistical overview on DNA data files. Keyword Finder analyses all the sequences in the input folder and extracts and collects keywords for each specific organism or the all the organisms, which have the DNA sequence and generates statistical overview. We are currently generating cotton and pepper cDNA libraries and often using the GenBank DNA sequences. Therefore, in this study we used cDNAs and ESTs of cotton and pepper for the demonstrating the use of these two tools. With help of these two utilities we observed that most of ESTs are useful for downstream applications such as mining microsatellites specific to an organ, tissue or development stage. The analyses of ESTs indicated that not only tandem repeats existed in ESTs but also tandem repeats differentially presented in different organ or tissue specific ESTs within and between the species. Utilities and the sample data sets are self-extracting files and freely available from or can be obtained upon request from the corresponding author.     

Predation and avoidance behaviour in aphid‐ladybird interactions of native and invasive ladybirds in Europe

1. While detrimental effects of invasive predators on native species are well documented, we often lack a mechanistic understanding of the invasion success. Lack of prey avoidance behaviour can lead to higher consumption rates by invasive predators compared to native predators. This competitive advantage is expected to contribute to the invasion success of non‐native predators.
2. We compared aphid consumption and cue avoidance behaviour of aphids between four native ladybird species (Coccinella septempunctata, Adalia bipunctata, Propylea quatuordecimpunctata, and Hippodamia variegata) and the invasive Asian ladybird Harmonia axyridis.
3. The invasive H. axyridis and the native C. septempunctata consumed more aphids than the three smaller native ladybird species. In line with our expectations, aphids avoided leaves bearing cues of most native ladybird species but not of the invasive H. axyridis.
4. Our results indicate that body size rather than ladybird origin determined aphid predation rates. The lack of aphid avoidance behaviour towards cues of H. axyridis indicates that they were not able to recognise the chemical cues of the invasive predator.
5. Relatively large body size and the absence of cue avoidance in aphids might benefit the invasive H. axyridis, particularly in comparison to smaller native ladybird species. The absence of avoidance behaviour in aphids might lead to even higher predation rates of H. axyridis under more natural conditions.