Revealing biases inherent in recombination protocols

Background  

The recombination of homologous genes is an effective protein engineering tool to evolve proteins. DNA shuffling by gene fragmentation and reassembly has dominated the literature since its first publication, but this fragmentation-based method is labor intensive. Recently, a fragmentation-free PCR based protocol has been published, termed recombination-dependent PCR, which is easy to perform. However, a detailed comparison of both methods is still missing.     

Directness of resource use metrics affects predictions of bear body fat gain

Many North American ursids rely on an annual hyperphagic period to obtain fat reserves necessary for winter survival and reproduction. Identifying causes of variation in body fat gain may improve understanding of how bear resource use affects body condition. We used data from southcentral Alaska to model changes in percentage body fat of adult female American black bears (Ursus americanus) in 1998 and 2000 and brown bears (Ursus arctos) in 2000. We used year, proportion of radio locations in different habitats, distance to streams containing salmon (Onchorynchus spp.), and degree of radio location clustering as predictors for black bears and elevation, distance to streams containing salmon, and degree of radio location clustering as predictors for brown bears. Degree of location clustering was the only predictor variable supported by parameter coefficients in black bear models, supporting our hypothesis that metrics of energetics perform better as predictors of body condition than habitat use. With every unit increase in location clustering black bear body fat increased 2 %. No predictor variables influenced variation in brown bear change in body fat. Some variables previously found useful for predicting bear presence (e.g., habitat) were not useful in predicting changes in body fat, an important biological outcome for these species. Rather than assuming fitness benefits of habitat-level selection, we recommend including metrics of energetics that might more directly influence biological outcomes.     

Need-based transfer systems are more vulnerable to cheating when resources are hidden

Need-based transfer systems pool risk among interdependent individuals. Such arrangements are bound by two simple rules: Ask for help only when in need and, if you are able, give help to others who ask. But there may be a temptation for individuals to break these rules for short-term personal profit. Here, we study one factor that may enforce honesty in need-based transfer relationships: the visibility of resources. Across three experiments employing a novel experimental economic game, breaking of both need-based transfer rules increased when resources were hidden rather than visible (Experiment 1: n = 82, online convenience sample from the US; Experiment 2: n = 80, student sample from the US; Experiment 3: n = 42, online convenience sample from the US). Participants with hidden resources were (1) more likely to request help when not actually in need (greediness), and (2) more likely to not fulfill requests from others for help, even when they had sufficient resources available to help (stinginess). These findings highlight the visibility of resources as one potential limitation of cooperative risk pooling systems.     

Effects of Crop Rotation and Nonfumigant Nematicides on Peanut and Corn Yields in Fields Infested with Criconemella Species

The effects of nematicide treatments and corn-peanut cropping sequences on the population development of Criconemella ornata, and C. sphaerocephala and the related impact on crop yields were investigated at two North Carolina locations. Criconemella ornata and C. sphaerocephala were present at the Norman Perry farm, Bertie County (BERTIE); however, only C. ornata was found at the Central Crops Research Station, Johnston County (CCRS). An untreated control was compared to aldicarb 15G, carbofuran 15G, ethoprop 10G, and terbufos 15G granular formulations applied at a rate of 2.2 kg a.i./ha. The cropping sequences were monocuhured corn (C-C-C); monocultured peanut (P-P-P); and two corn-peanut (C-P-C; P-C-P) rotations. Nematicides were inconsistent in controlling C. sphaerocephala and C. ornata. Nematicide treatments enhanced corn yields in the monoculture-cropping cycle in the final year of the experiment at CCRS. Peanut yields were greater in the rotated cropping sequence than under monoculture at BERTIE, but rotation had less effect on peanut yields at CCRS. Declining yields were correlated with an increase in numbers of nematodes. Corn was an intermediate host for C. sphaerocephala and a moderate to poor host for C. ornata. Peanut was an excellent host for C. ornata and a poor host for C. sphaerocephala.