A simple procedure to determine the infectivity and host range of viruses infecting anaerobic and hyperthermophilic microorganisms

Plaque assay is the method traditionally used to isolate and purify lytic viruses, to determine the viral titer and host range. Whereas most bacterioviruses are either temperate or lytic, the majority of known archeoviruses are not lytic (i.e. they are temperate or chronic). In view of the widespread occurrence of such viruses in extreme environments, we designed an original method, called the inverted spot test, to determine the host range and infectivity of viruses isolated from anaerobic hyperthermophilic and sulfur-reducing microorganisms. Here, we used this approach to prove for the first time the infectivity of Pyrococcus abyssi virus 1 (PAV1) and to confirm the host range of Thermococcus prieurii virus 1 (TPV1), the only two viruses isolated so far from any of the described marine hyperthermophilic archaea (Euryarchaeota phylum, Thermococcales order).     

Histological study of karaurids,the oldest known (stem) urodeles

Little is known about the initial phases of lissamphibian history (before the Cretaceous), because their fossil record is quite scanty. Only the morphology of the earliest members has been investigated, although other sets of data, from bone microanatomy and histology, are known to yield valuable paleobiological information. In the present study, we provide the first histological and microanatomical data on the oldest known stem-urodeles, the karaurids, from the Middle Jurassic. Three humeri from the Upper Bathonian, Oxfordshire, referred to juvenile or subadult individuals of Marmorerpeton and to an unnamed caudate of undetermined (but obviously non-larval) ontogenetic stage, were sampled in order to shed new light on the habitat and ontogeny of these basal caudates. The great compactness of the three humeri suggests that these salamanders were aquatic. The presence of extensive amounts of calcified cartilage in the humeri greatly strengthens the case for the presence of neoteny in these taxa, a suggestion that had initially been made on the basis of a few morphological characters. This constitutes the oldest known occurrence of neoteny in lissamphibians. Finally, bone histology reveals that the growth of Marmorerpeton and the related unnamed caudate was fairly slow and cyclic, a characteristic of extant lissamphibians.     

Three founding ancestral genomes involved in the origin of sugarcane

Background and AimsModern sugarcane cultivars (Saccharum spp.) are high polyploids, aneuploids (2n = ~12x = ~120) derived from interspecific hybridizations between the domesticated sweet species Saccharum officinarum and the wild species S. spontaneum.MethodsTo analyse the architecture and origin of such a complex genome, we analysed the sequences of all 12 hom(oe)ologous haplotypes (BAC clones) from two distinct genomic regions of a typical modern cultivar, as well as the corresponding sequence in Miscanthus sinense and Sorghum bicolor, and monitored their distribution among representatives of the Saccharum genus.Key ResultsThe diversity observed among haplotypes suggested the existence of three founding genomes (A, B, C) in modern cultivars, which diverged between 0.8 and 1.3 Mya. Two genomes (A, B) were contributed by S. officinarum; these were also found in its wild presumed ancestor S. robustum, and one genome (C) was contributed by S. spontaneum. These results suggest that S. officinarum and S. robustum are derived from interspecific hybridization between two unknown ancestors (A and B genomes). The A genome contributed most haplotypes (nine or ten) while the B and C genomes contributed one or two haplotypes in the regions analysed of this typical modern cultivar. Interspecific hybridizations likely involved accessions or gametes with distinct ploidy levels and/or were followed by a series of backcrosses with the A genome. The three founding genomes were found in all S. barberi, S. sinense and modern cultivars analysed. None of the analysed accessions contained only the A genome or the B genome, suggesting that representatives of these founding genomes remain to be discovered.ConclusionsThis evolutionary model, which combines interspecificity and high polyploidy, can explain the variable chromosome pairing affinity observed in Saccharum. It represents a major revision of the understanding of Saccharum diversity.     

Individual recognition is associated with holistic face processing in Polistes paper wasps in a species-specific way

Most recognition is based on identifying features, but specialization for face recognition in primates relies on a different mechanism, termed ‘holistic processing’ where facial features are bound together into a gestalt which is more than the sum of its parts. Here, we test whether individual face recognition in paper wasps also involved holistic processing using a modification of the classic part-whole test in two related paper wasp species: Polistes fuscatus, which use facial patterns to individually identify conspecifics, and Polistes dominula, which lacks individual recognition. We show that P. fuscatus use holistic processing to discriminate between P. fuscatus face images but not P. dominula face images. By contrast, P. dominula do not rely on holistic processing to discriminate between conspecific or heterospecific face images. Therefore, P. fuscatus wasps have evolved holistic face processing, but this ability is highly specific and shaped by species-specific and stimulus-specific selective pressures. Convergence towards holistic face processing in distant taxa (primates, wasps) as well as divergence among closely related taxa with different recognition behaviour (P. dominula, P. fuscatus) suggests that holistic processing may be a universal adaptive strategy to facilitate expertise in face recognition.     

Threatened fish species in the Northeast Atlantic are functionally rare

Aim

The criteria used to define the International Union for Conservation of Nature (IUCN) Red List categories are essentially based on demographic parameters at the species level, but they do not integrate species' traits or their roles in ecosystems. Consequently, current IUCN-based protection measures may not be sufficient to conserve ecosystem functioning and services. Some species may have a singular combination of traits associated with unique functions. Such functionally distinct species are increasingly recognized as a key facet of biodiversity since they are, by definition, functionally irreplaceable. The aim of this study is to investigate whether threatened species are also functionally rare and to identify which traits determine extinction risk.

Location

European continental shelf seas.

Time period

1984–2020.

Major taxa studied

Marine fish.

Methods

Using newly compiled trait information of 425 marine fish species in European waters, and more than 30 years of scientific bottom trawl surveys, we estimated the functional distinctiveness, restrictedness and scarcity of each species and cross-referenced it with their IUCN conservation status.

Results

In European continental shelf seas, 38% of the species threatened with extinction (9 out of 24 species) were identified as the most functionally distinct. By mapping extinction risk in the multidimensional species trait space, we showed that species with the greatest risk of extinction are long-lived and of high trophic level. We also identified that the most functionally distinct species are sparsely distributed (4% of the total area on average) and have scarce abundances (<1% of the relative mean abundance of common species).

Main Conclusions

Because a substantial proportion of threatened species are functionally distinct and thus may play unique roles in ecosystem functioning, we stress that species traits—especially functional rarity—should become an indispensable step in the development of conservation management plans.     

Differential Influence of Life Cycle on Growth and Toxin Production of three Pseudo‐nitzschia Species (Bacillariophyceae)

We used a multistrain approach to study the intra‐ and interspecific variability of the growth rates of three Pseudo‐nitzschia species – P. australis, P. fraudulenta, and P. pungens – and of their domoic acid (DA) production. We carried out mating and batch experiments to investigate the respective effects of strain age and cell size, and thus the influence of their life cycle on the physiology of these species. The cell size – life cycle relationship was characteristic of each species. The influence of age and cell size on the intraspecific variability of growth rates suggests that these characteristics should be considered cautiously for the strains used in physiological studies on Pseudo‐nitzschia species. The results from all three species do not support the hypothesis of a decrease in DA production with time since isolation from natural populations. In P. australis, the cellular DA content was rather a function of cell size. More particularly, cells at the gametangia stage of their life cycle contained up to six times more DA than smaller or larger cells incapable of sexual reproduction. These findings reveal a link between P. australis life cycle and cell toxicity. This suggest that life cycle dynamics in Pseudo‐nitzschia natural populations may influence bloom toxicity.