Localized contacts between hosts reduce pathogen diversity

We investigate the dynamics of a simple epidemiological model for the invasion by a pathogen strain of a population where another strain circulates. We assume that reinfection by the same strain is possible but occurs at a reduced rate due to acquired immunity. The rate of reinfection by a distinct strain is also reduced due to cross-immunity. Individual based simulations of this model on a 'small-world' network show that the proportion of local contacts in the host contact network structure significantly affects the outcome of such an invasion, and as a consequence will affect the patterns of pathogen evolution. In particular, hosts interacting through a 'small-world' network of contacts support lower prevalence of infection than well-mixed populations, and the region in parameter space for which an invading strain can become endemic and coexist with the circulating strain is smaller, reducing the potential to accommodate pathogen diversity. We discuss the underlying mechanisms for the reported effects, and we propose an effective mean-field model to account for the contact structure of the host population in 'small-world' networks.     

The effect of epibionts on the susceptibility of the red seaweed Cryptonemia seminervis to herbivory and fouling

Epibiosis or fouling on living organisms can have direct and indirect detrimental effects, in particular on photosynthetic organisms such as seaweeds. It thus seems reasonable to hypothesize that macroalgae have been selected for the presence or induction of antifouling (AF) defences. The red seaweed Cryptonemia seminervis is usually found in nature with an elevated cover of epibionts. To assess the effect of epibiosis on the susceptibility of this seaweed to herbivory and fouling, the abundance of fouling was evaluated and compared to herbivore consumption (by amphipods and sea urchins) of fouled (bryozoan and sponge) and non-fouled C. seminervis. Attachment of the mussel Perna perna to surfaces treated with extracts from seaweeds with and without epibionts was also assessed. Epibiosis corresponded to ca. 51% of the blade surface of C. seminervis, sometimes covering as much as 90% and up to 51% of the thallus weight, encompassing mainly the bryozoan Membranipora membranacea and an unidentified sponge. Algae colonized by M. membranacea were preferred compared to algae devoid of epibionts, a 'shared doom' effect, either by the amphipod Elasmopus brasiliensis or by the urchin Lytechinus variegatus (p < 0.01). Sponge epibiosis also increased consumption by both herbivores (p < 0.001), suggesting that epibionts may act as lures to herbivores, attracting consumers that otherwise would not feed significantly on the seaweed. Foods containing extracts from fouled C. seminervis were preferred by urchins over the alga devoid of epibionts. However, extracts from fouled alga inhibited mussel attachment when compared to epibiont-free alga. Differences might be a direct detrimental effect of the presence of epibionts. On the other hand, epibiosis may induce the production of AF defences in C. seminervis.     

The Inhibitory Effect of an RGD-Human Chitin-Binding Domain Fusion Protein on the Adhesion of Fibroblasts to Reacetylated Chitosan Films

Biomaterials used for tissue engineering applications must provide a structural support for the tissue development and also actively interact with cells, promoting adhesion, proliferation, and differentiation. To achieve this goal, adhesion molecules may be used, such as the tripeptide Arg-Gly-Asp (RGD). A method based on the use of a carbohydrate-binding module, with affinity for chitin, was tested as an alternative approach to the chemical grafting of bioactive peptides. This approach would simultaneously allow the production of recombinant peptides (alternatively to peptide synthesis) and provide a simple way for the specific and strong adsorption of the peptides to the biomaterial. A fusion recombinant protein, containing the RGD sequence fused to a human chitin-binding module (ChBM), was expressed in E. coli. The adhesion of fibroblasts to reacetylated chitosan (RC) films was the model system selected to analyze the properties of the obtained proteins. Thus, the evaluation of cell attachment and proliferation on polystyrene surfaces and reacetylated chitosan films, coated with the recombinant proteins, was performed using mouse embryo fibroblasts 3T3. The results show that the recombinant proteins affect negatively fibroblasts anchorage to the materials surface, inhibiting its adhesion and proliferation. We also conclude that this negative effect is fundamentally due to the human chitin-binding domain.     

The Functions of Song in the Serin

The function of song in the serin Serinus serinus was investigated by measuring variation in singing time and song flights by the male, and nest building by the female during the prelaying and laying period, and by correlating nest building, extra-pair copulation attempts and chasing of the female with male singing time and song flights between pairs. Both singing time and nest building varied in relation to the female fertile period, peaking at day −4. Moreover, nest-building activity correlated with singing time, but not song flights, between pairs. This suggests that song may have a function in stimulating the female to nest build or begin rapid yolk deposition. Pair copulations were not correlated with singing time or song flights either over days relative to laying or between pairs and pairs were not more likely to copulate in a given minute of observation when the male had sung in the previous minute than when he had not. However, extra-pair copulation attempts and chasing of the female showed a tendency to be negatively correlated with song flight but not singing time, between pairs. This suggests that song flight may have a function in discouraging sexual competition from other males.     

Native geometry and the dynamics of protein folding

In this paper, we investigate the role of native geometry on the kinetics of protein folding based on simple lattice models and Monte Carlo simulations. Results obtained within the scope of the Miyazawa-Jernigan indicate the existence of two dynamical folding regimes depending on the protein chain length. For chains larger than 80 amino acids, the folding performance is sensitive to the native state's conformation. Smaller chains, with less than 80 amino acids, fold via two-state kinetics and exhibit a significant correlation between the contact order parameter and the logarithmic folding times. In particular, chains with N=48 amino acids were found to belong to two broad classes of folding, characterized by different cooperativity, depending on the contact order parameter. Preliminary results based on the Go model show that the effect of long-range contact interaction strength in the folding kinetics is largely dependent on the native state's geometry.     

Seta ultrastructure in Pogonatum aloides Hedw

Abstract

The seta ultrastructure in Pogonatum aloides Hedw. has been observed by electron microscopy. We have observed the conductive cells in the sporophyte of Pogonatum aloides by the transversal and the longitudinal sections moreover in transections, the cells of the parenchymatic ring have more developed plastids than the cells of the cortex. The similarities and differences in the disposition of the conductive cells within the same or in different subclasses is discussed.     

Association of Single Nucleotide Polymorphisms in the Lens Epithelium-Derived Growth Factor (LEDGF/p75) with HIV-1 Infection Outcomes in Brazilian HIV-1+ Individuals

The lens epithelium-derived growth factor p75 (LEDGF/p75), coded by the PSIP1 gene, is an important host co-factor that interacts with HIV-1 integrase to target integration of viral cDNA into active genes. The aim of this study was to investigate the association of SNPs in the PSIP1 gene with disease outcome in HIV-1 infected patients. We performed a genetic association study in a cohort of 171 HIV-1 seropositive Brazilian individuals classified as rapid progressors (RP, n = 69), typical progressors (TP, n = 79) and long-term nonprogressors (LTNP, n = 23). The exonic SNP rs61744944 and 9 tag SNPs were genotyped. A group of 192 healthy subjects was analyzed to determine the frequency of SNPs and haplotypes in the general population. Linkage disequilibrium (LD) analyses indicated that the SNPs analyzed were not in high LD (r²<0.8). Logistic regression models suggested that patients carrying the T allele rs61744944 (472L) were more likely to develop a LTNP phenotype (OR = 4.98; p = 0.05) as compared to TP group. The same trend was observed when LTNPs were compared to the RP group (OR = 3.26). Results of haplotype analyses reinforced this association, since the OR values obtained for the haplotype carrying allele T at rs61744944 also reflected an association with LTNP status (OR = 6.05; p = 0.08 and OR = 3.44; p = 0.12 for comparisons to TP and RP, respectively). The rare missense variations Ile436Ser and Thr473Ile were not identified in the patients enrolled in this study. Gene expression analyses showed lower LEDGF/p75 mRNA levels in peripheral blood mononuclear cells obtained from HIV-1 infected individuals. However, these levels were not influenced by any of the SNPs investigated. In spite of the limited number of LTNPs, these data suggest that the PSIP1 gene could be associated with the outcome of HIV-1 infection. Further analyses of this gene may guide the identification of causative variants to help predict disease course.     

Transglutaminase activity during greening and growth ofHelianthus tuberosus explants in vitro

Summary Explants of dormant tubers ofHelianthus tuberosus were grown in vitro, with or without 10 M 2,4-D, for 3 weeks. The 2,4-D-treated explants grew by cell enlargement and division and formed a non-photosynthetic friable callus composed of thin-walled cells. However, untreated explants, whose cells did not divide, differentiated chloroplasts and contained intercellular spaces filled with opaque material; chloroplasts were derived from non-photosynthetic plastids with tubular complexes and secondary starch grains: both disappeared when the thylakoids began to organize and form small grana. Nuclei also changed their morphology and became invaginated. Treated and untreated explants showed differences in their protein electrophoretic patterns and transglutaminase activity. This enzyme activity, low in dormant tubers, increased in both explants; considerably in untreated greening explants but much less in 2,4-D-treated growing ones. SDS-PAGE analysis of labelled conjugates, formed by in vitro incubation with labelled putrescine, indicated that, in addition to some apparently common substrates with M_r more than 36 kDa, proteins of lower mass were also labelled in the untreated greening explants. These data are discussed in the light of the possible role of transglutaminase in plants.Abbreviations DAPI 4,6-diamidino-2-phenylindole - 2,4-D 2,4-dichlorophenoxyacetic acid - FM fluorescence microscopy - LM light microscopy - PA polyamines - PAGE polyacrylamide gel electrophoresis - SDS sodium dodecylsulphate - TCA trichloroacetic acid - TEM transmission electron microscopy - TGase transglutaminase - Tris-buffer tris(hydroxymethyl)aminomethane hydrochloride and tris(hydroxymethyl)aminomethane     

Exo- and endo-glucanolytic activity of cellulases purified from Trichoderma reesei

Four cellulases, produced by Trichoderma reesei, have been purified by preparative isoelectric focusing (Rotofor), size exclusion (Sephacryl 100 HR), anionic (Mono Q) and cationic (Mono S) chromatography and chromatofocusing (Mono P). Enzymatic activity with a large number of substrates allowed the proteins to be classified as: cellobiohydrolase I, cellobiohydrolase II, endoglucanase I and endoglucanase II. The exo- or endo-glucanase character of these enzymes was analysed by using a technique based on the measurement of the Avicel insoluble fibres reducing power. © Rapid Science Ltd. 1998