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191.
PCR-based assays of mendelian polymorphisms from anonymous single-copy nuclear DNA: techniques and applications for population genetics 总被引:5,自引:0,他引:5
This paper outlines a PCR-based approach for population genetics that
offers several advantages over conventional Southern blotting methods for
revealing restriction-fragment-length polymorphisms (RFLPs) in nuclear DNA.
Primers are constructed from clones isolated from a nuclear DNA library,
and these primers subsequently are employed in in vitro syntheses of
homologous regions. Amplified products are then screened directly for RFLPs
by using gel-staining procedures. Population applications for this
PCR-based approach, including potential strengths and weaknesses, are
exemplified by two RFLP data sets generated to estimate (a) male-mediated
gene flow in the green turtle (Chelonia mydas) and (b) geographic
population genetic structure in the American oyster (Crassostrea
virginica). Restriction assays of amplified products from 14 or 15
independent primer pairs in each species revealed polymorphisms at several
loci that proved highly informative in the population genetic analyses. In
general, the Mendelian polymorphisms produced by this PCR-based approach
will provide useful genetic markers for population studies, particularly in
situations where simpler and less expensive allozyme methods have failed,
for whatever reason, to provide adequate information.
相似文献
192.
Régine Audran Léontine Dazord Louis Toujas 《Cancer immunology, immunotherapy : CII》1994,39(5):299-304
Human blood mononuclear cells were cultured for 7 days in hydrophobic plastic bags. Macrophages differentiated from monocytes and purified by elutriation were then cocultured with round-shaped aggregates of epithelial cells (spheroids). Spheroids prepared from the SK-MES-1 carcinoma cell line were cultured individually, under constant stirring, in multiwell plates coated with agarose. Macrophage/spheroid interactions were investigated under various experimental conditions. Macrophages activated with interferon aggregated to each other and to spheroids, in contrast to control unactivated macrophages. Histological examination, after staining with a macrophage-specific monoclonal antibody, showed that both control and interferon--activated macrophages migrated between epithelial tumor cells and infiltrated the spheroids. The addition of anti-ICAM-1 monoclonal antibody inhibited macrophage homotypic aggregation as well as aggregation to and penetration into spheroids. The macrophages did not exert cytolytic effects, as judged by a chronium-51 release assay, but provoked a diminution of tritiated thymidine incorporation by tumor cells. Cytostatic activity was observed with effector: target ratios as low as 116, and was maximal (99% at a 11 ET ratio) with macrophages differentiated in the presence of granulocyte/macrophage-colony-stimulating factor. The cytostatic effect was not related to tumor necrosis factor secretion.Work supported by Association pour la recherche sur le cancer (ARD) 相似文献
193.
194.
DNA fingerprints from hypervariable mitochondrial genotypes 总被引:4,自引:0,他引:4
Conventional surveys of restriction-fragment polymorphisms in mitochondrial
DNA of menhaden fish (Brevoortia tyrannus/patronus complex) and chuckwalla
lizards (Sauromalus obesus) revealed exceptionally high levels of genetic
variation, attributable to differences in mtDNA size as well as in
restriction sites. The observed probabilities that any two randomly drawn
individuals differed detectably in mtDNA genotype were 0.998 and 0.983 in
the two species, respectively. Thus, the variable gel profiles provided
unique mtDNA "fingerprints" for most conspecific animals assayed. mtDNA
fingerprints differ from nuclear DNA fingerprints in several empirical
respects and should find special application in the genetic assessment of
maternity.
相似文献
195.
The purpose of this paper is to assess the extent of gene identity and
differentiation at 33 dinucleotide repeat loci (377 total alleles) within
and among three European and three Native American populations. In order to
do this, we show that a maximum-likelihood method proposed for phylogenetic
trees (Cavalli-Sforza and Piazza 1975) can be used to estimate gene
identity (Nei 1987) with respect to any hierarchical structure. This method
allows gene differentiation to be evaluated with respect to any internal
node of a hierarchy. It also allows a generalization of F- and G-statistics
to situations with unequal expected levels of differentiation. Our
principal finding is that levels of genetic differentiation are unique to
specific populations and levels of nesting. The populations of European
origin show very little internal differentiation; moreover, their
continental average is close to the total population defined by the
aggregate of Europeans and Native Americans. By contrast, the Native
American populations show moderate levels of internal differentiation, and
a great distance between their continental average and the total. The
results of analyses of subsets of loci that were selected to have high gene
diversities in either Europeans or Native Americans closely parallel those
from the total set of loci. This suggests that the principal results are
unlikely to be caused by a European ascertainment bias in locus selection.
In summary, our findings demonstrate that partitions of gene diversity into
within- and between-populations components are heavily biased by the
populations analyzed and the models fitted. Optimistically, however, more
information is available to analyze population history and evolution by
quantifying, as we have done, the uniqueness of patterns of
differentiation.
相似文献
196.
Patrick Knott Eden Pappo Michelle Cameron JC deMauroy Charles Rivard Tomasz Kotwicki Fabio Zaina James Wynne Luke Stikeleather Josette Bettany-Saltikov Theodoros B Grivas Jacek Durmala Toru Maruyama Stefano Negrini Joseph P O’Brien Manuel Rigo 《Scoliosis》2014,9(1):1-9
This 2012 Consensus paper reviews the literature on side effects of x-ray exposure in the pediatric population as it relates to scoliosis evaluation and treatment. Alternative methods of spinal assessment and imaging are reviewed, and strategies for reducing the number of radiographs are developed. Using the Delphi technique, SOSORT members developed consensus statements that describe how often radiographs should be taken in each of the pediatric and adolescent sub-populations. 相似文献
197.
Bacterioplankton Dynamics in the McMurdo Dry Valley Lakes, Antarctica: Production and Biomass Loss over Four Seasons 总被引:4,自引:0,他引:4
Abstract Research of the microbial ecology of McMurdo Dry Valley lakes has concentrated primarily on phototrophs; relatively little is known about the heterotrophic bacterioplankton. Bacteria represent a substantial proportion of water column biomass in these lakes, comprising 30 to 60% of total microplankton biomass. Bacterial production and cell numbers were measured 3 to 5 times, within four Antarctic seasons (October to January), in Lakes Fryxell, Hoare, and Bonney. The winter-spring transition (September to October) was included during one year. Lake Fryxell was the most productive, but variable, lake, followed by Lakes Bonney and Hoare. Bacterial production ranged from 0 to 0.009 μg C ml-1 d-1; bacterial populations ranged from 3.2 x 10(4) to 4.4 x 10(7) cells ml-1. Bacterial production was always greatest just below the ice cover at the beginning of the season. A second maximum developed just above the chemocline of all the lakes, as the season progressed. Total bacterioplankton biomass in the lakes decreased as much as 88% between successive sampling dates in the summer, as evidenced by areal integration of bacterial populations; the largest decreases in biomass typically occurred in mid-December. A forward difference model of bacterial loss in the trophogenic zone and the entire water column of these lakes showed that loss rates in the summer reached 6.3 x 10(14) cells m-2 d-1 and 4.16 x 10(12) cells m-2 d-1, respectively. These results imply that bacteria may be a source of carbon to higher trophic levels in these lakes, through grazing. 相似文献
198.
Fish populations in Albasini and Nandoni dams are negatively affected by extensive netting practices. This observation was made by the authors following a number of fish health assessment surveys related to aquatic pollution in the Luvuvhu River catchment. A comparison between the number and size of fish collected over a period of ten years indicated decreases in the average size and a consistent low number of fish, despite similar extensive sampling efforts. Unregulated netting is a common practice in both dams. This may become a serious problem as fish from these two dams are an important source of protein for the local communities. The purpose of this note is to report that gillnets are illegally used in the system and on the effect this could have on the fish population. The authors suggest educational and awareness initiatives to inform local communities about the importance of utilising fish in a sustainable manner to ensure the livelihood of generations to come. 相似文献
199.
Moreau MF Libouban H Legrand E Baslé MF Audran M Chappard D 《Journal of musculoskeletal & neuronal interactions》2001,1(3):209-213
In man, hypogonadism is a risk factor for osteoporosis. Orchidectomy (ORX) in the rat leads to an imbalance between resorption and formation resulting in bone loss. We have measured whole body weight, lean and fat mass, whole bone mass (BMC) in the ORX rat model by dual X-ray densitometry (DXA). Forty-eight male Wistar rats (18-19 weeks old) were studied at 2, 4, 8 and 16 weeks. In each group, 6 rats were ORX and 6 sham-operated were used as control. DXA was performed on the whole body and isolated tibia. The whole body weight of the ORX animals became significantly decreased only at 16 weeks. Whole body BMC was reduced from 8 weeks in the ORX group. The most striking result was a net decrease in lean mass that reached -15.7% at 16 weeks. On the other hand, fat mass remained unchanged during the time series in the ORX animals. 相似文献
200.