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71.
Multiple interspecies transmissions of human and simian T-cell leukemia/lymphoma virus type I sequences 总被引:8,自引:0,他引:8
Using two sets of nucleotide sequences of the human and simian T-cell
leukemia/lymphoma virus type I (HTLV-I/STLV-I), one consisting of 522 bp of
the env gene from 70 viral strains and the other a 140-bp segment from the
pol gene of 52 viral strains, I estimated cladograms based on a statistical
parsimony procedure that was developed specifically to estimate
within-species gene trees. An extension of a nesting procedure is offered
for sequence data that forms nested clades used in hypothesis testing. The
nested clades were used to test three hypotheses relating to transmission
of HTLV/STLV sequences: (1) Have cross-species transmissions occurred and,
if so, how many? (2) In what direction have they occurred? (3) What are the
geographic relationships of these transmission events? The analyses support
a range of 11-16 cross-species transmissions throughout the history of
these sequences. Additionally, outgroup weights were assigned to haplotypes
using arguments from coalescence theory to infer directionality of
transmission events. Conclusions on geographic origins of transmission
events and particular viral strains are inconclusive due to small samples
and inadequate sampling design. Finally, this approach is compared directly
to results obtained from a traditional maximum parsimony approach and found
to be superior at establishing relationships and identifying instances of
transmission.
相似文献
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Variability in molluscan hemocytes: a flow cytometric study 总被引:4,自引:0,他引:4
Reported variability in numbers and relative proportions of hemocytes in marine bivalves may be related to environmental conditions and laboratory method differences. An automated identification assay, flow cytometry, removes much laboratory bias, but its usefulness is limited because the putative cell types in delineated subpopulations have never been confirmed. The present study was designed to: (1) confirm the identity of oyster hemocyte subpopulations described by flow cytometry, and (2) use flow cytometry in an experimental analysis of potential causes of variation. Light-scatter flow cytometry consistently differentiated three subpopulations in oysters from two mid-Atlantic (USA) sites. Cell sorting and microscopy identified them as granular, small granular, and agranular (hyalinocytes and apparently degranulated) hemocytes. Subpopulation proportions estimated by microscopy and by flow cytometry were significantly correlated (r(2) = 0.27 to 0.50). In a 4-week laboratory experiment, neither temperature (12 vs. 22 degrees C) nor food (fed vs. not fed) had a statistically significant effect on total or differential counts, or on hemocyte viability. Most of the variability was attributable to individual differences and was very similar to that reported for vertebrates. We hypothesize that variability in molluscan hemocytes may be more immediately linked to individual metabolic condition than to ambient changes. 相似文献
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Haemocyte subpopulations from three bivalve species (the clams Ruditapes philippinarum and Mercenaria mercenaria and the oyster, Crassostrea virginica) were characterised using light-scatter flow cytometry and a standard set of methods. Two parameter (forward and side scatter) plots for the three species were very similar and resembled plots for mammalian white blood cells. Two haemocyte groups (granulocytes and agranulocytes) were found in both the haemolymph and the extrapallial fluid of the clams while those two groups and an additional third group were found in the haemolymph of the oyster. All subpopulations were sorted on to glass slides, identified, photographed, and measured microscopically. Sorting of the bivalve granulocyte and agranulocyte groups indicated varying degrees of heterogeneity within each population in terms of either size or granularity, or both. However, subsorting of selected regions within the major groupings produced highly pure haemocyte populations. The comparison showed both similarities and differences among species. For instance, a distinct subpopulation of small granulocytes was present only in oysters and a subpopulation of spindle-shaped haemocytes, only in M. mercenaria. The haemocyte subpopulations delineated by light-scatter flow cytometry underscore questions about cell lineages, but the instrument also offers a powerful technique for answering them. 相似文献
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