Controlled and functional expression of the Pseudomonas oleovorans alkane utilizing system in Pseudomonas putida and Escherichia coli

The OCT plasmid encodes enzymes for alkane hydroxylation and alkanol dehydrogenation. Structural components are encoded on the 7.5-kilobase pair alkBAC operon, whereas positive regulatory components are encoded by alkR. We have constructed plasmids containing fusions of cloned alkBAC and alkR DNA and used these fusion plasmids to study the functional expression of the alkBAC operon and the regulatory locus alkR in Pseudomonas putida and in Escherichia coli. Growth on alkanes requires a functional chromosomally encoded fatty acid degradation system in addition to the plasmid-borne alk system. While such a system is active in P. putida, it is active in E. coli only in fadR mutants in which fatty acid degradation enzymes are expressed constitutively. Using such mutants, we found that E. coli as well as P. putida grew on octane as the sole source of carbon and energy when they were supplied with the cloned complete alk system. The alkR locus was strictly necessary in E. coli as well as in P. putida for expression of the alkBAC operon. The alkBAC operon could, however, be further reduced to a 5-kilobase pair operon without affecting the Alk phenotype in either species to a significant extent. Although with this reduction the plasmid-encoded alkanol dehydrogenase activity was lost, chromosomally encoded alkanol dehydrogenases in P. putida and E. coli compensated for this loss. The induction kinetics of the alk system was studied in detail in P. putida and E. coli. We used specific antibodies raised against alkane hydroxylase to follow the appearance of this protein following induction with octane. We found the induction kinetics of alkane hydroxylase to be similar in both species. A steady-state level was reached after about 2 h of induction in which time the alkane hydroxylase accounted for about 1.5% of total newly synthesized protein. Thus, alkBAC expression is very efficient and strictly regulated to both P. putida and E. coli.     

Dissecting Arabidopsis Gβ signal transduction on the protein surface

The heterotrimeric G-protein complex provides signal amplification and target specificity. The Arabidopsis (Arabidopsis thaliana) Gβ-subunit of this complex (AGB1) interacts with and modulates the activity of target cytoplasmic proteins. This specificity resides in the structure of the interface between AGB1 and its targets. Important surface residues of AGB1, which were deduced from a comparative evolutionary approach, were mutated to dissect AGB1-dependent physiological functions. Analysis of the capacity of these mutants to complement well-established phenotypes of Gβ-null mutants revealed AGB1 residues critical for specific AGB1-mediated biological processes, including growth architecture, pathogen resistance, stomata-mediated leaf-air gas exchange, and possibly photosynthesis. These findings provide promising new avenues to direct the finely tuned engineering of crop yield and traits.     

Mechanistic possibilities in MauG-dependent tryptophan tryptophylquinone biosynthesis

Tryptophan tryptophylquinone (TTQ), the prosthetic group of methylamine dehydrogenase, is formed by post-translational modifications of two tryptophan residues that result in the incorporation of two oxygens into one tryptophan side chain and the covalent cross-linking of that side chain to a second tryptophan residue. MauG is a novel 42 kDa di-heme protein, which is required for the biosynthesis of TTQ. An experimental system has been developed that allows the direct continuous monitoring of MauG-dependent TTQ biosynthesis in vitro. Four diverse electron donors, ascorbate, dithiothreitol, reduced glutathione, and NADH, were each able to provide reducing equivalents for MauG-dependent TTQ biosynthesis under aerobic conditions. The reaction with NADH was mediated by an NADH-dependent oxidoreductase. Under anaerobic conditions in the absence of an electron donor, H(2)O(2) could serve as a substrate for MauG-dependent TTQ biosynthesis. During the reaction with H(2)O(2), a discrete reaction intermediate was observed, which is likely the reduced quinol form of TTQ that then is oxidized to the quinone. These results suggest that not only the incorporation of oxygen into the monohydroxylated biosynthetic intermediate but also the subsequent oxidation of quinol MADH during TTQ biosynthesis is a MauG-dependent process. The implications of these results in elucidating the mechanism of MauG-dependent TTQ biosynthesis and identifying potential physiologic electron and oxygen donors for TTQ biosynthesis in vivo are discussed.     

The Potent Anti-HIV Activity of CXCL12γ Correlates with Efficient CXCR4 Binding and Internalization

We previously demonstrated that the naturally occurring splice variant stromal cell-derived factor 1γ/CXCL12γ is the most potent CXCL12 isoform in blocking X4 HIV-1, with weak chemotactic activity. A conserved BBXB domain (B for basic and X for any residue) located in the N terminus (²⁴KHLK²⁷) is found in all six isoforms of CXCL12. To determine whether the potent antiviral activity of CXCL12γ is due to the presence of the extra C-terminal BBXB domains, we mutated each domain individually as well as in combination. Although binding of CXCL12γ to heparan sulfate proteoglycan (HSPG) was 10-fold higher than that observed with CXCL12α, the results did not demonstrate a direct correlation between HSPG binding and the potent antiviral activity. CXCL12γ mutants lacking the conserved BBXB domain (designated γB1) showed increased binding to HSPG but reduced anti-HIV activity. In contrast, the mutants lacking the C-terminal second and/or third BBXB domain but retaining the conserved domain (designated B2, B3, and B23) showed decreased binding to HSPG but increased anti-HIV activity. The B2, B3, and B23 mutants were associated with enhanced CXCR4 binding, receptor internalization, and restored chemotaxis. Internalization of CXCR4 was more potent with CXCL12γ than with CXCL12α and was significantly reduced when the conserved BBXB domain was mutated. We concluded that the observed potent anti-HIV-1 activity of CXCL12γ is due to increased affinity for CXCR4 and to efficient receptor internalization.Chemokines are small, structurally related chemoattractant cytokines characterized by conserved cysteine residues. Based on the positions of the first N-terminal cysteines, chemokines fall into four subfamilies. The CC and CXC subfamilies have been well characterized. The CC subfamily includes the following: regulated on activation, normal T-cell expressed and secreted (RANTES), monocyte chemoattractant protein 1 (MCP-1), and macrophage inflammatory peptides 1 (MIP-1). The prototype of the CXC subfamily is interleukin-8 (IL-8)/CXCL8. The C chemokine (lymphotactine) and CX3C chemokine (fractalkine) subfamilies were recently identified (reviewed in reference 30). The physiological activities of chemokines are mediated by the selective recognition and activation of chemokine receptors belonging to the seven-membrane-domain G-protein-coupled receptor superfamily (GPCRs). In addition, chemokines also bind to glycosaminoglycans (GAGs) through distinct binding sites. Chemokine binding to GAGs on cells, particularly endothelial cells, results in chemotactic chemokine gradients that allow correct presentation of chemokines to leukocytes, therefore enabling target cells to cross the endothelial barrier and migrate into tissues (reviewed in reference 10).Stromal cell-derived factor 1 (SDF-1)/CXCL12 is a member of the CXC chemokine family and is a key regulator of B-cell lymphopoiesis, hematopoietic stem cell mobilization, and leukocyte migration (reviewed in reference 10). CXCL12 was originally thought to mediate these processes through the single receptor CXCR4 (9). However, later studies demonstrated that RDC-1/CXCR7 is also a receptor for CXCL12 (6, 11). CXCL12 has also been shown to block HIV-1 infection (5). There are two known human splice variants of CXCL12, referred to as CXCL12α and CXCL12β (27). The genomic structure of the CXCL12 gene revealed that human CXCL12α and CXCL12β are encoded by a single gene and arise by alternative splicing. The cDNAs corresponding to CXCL12α and CXCL12β encode proteins of 89 and 93 amino acids, respectively. A third splice variant, classified as CXCL12γ, has been identified in rats (14). The human equivalent of CXCL12γ was recently identified among other splice variants of CXCL12 (33). The novel human splice variants CXCL12γ, CXCL12ɛ, CXCL12δ, and CXCL12θ (also reported as CXCL12ϕ [33]) are expressed through alternative splicing events that result in different exons being added to the same first three exons. Therefore, all six splice variants of CXCL12 are identical in the first 88 amino acid residues from the amino terminus.It has been demonstrated that CXCL12α and -β are expressed in numerous tissues, with the highest expression levels in the liver, pancreas, and spleen (33). The mRNA encoding CXCL12γ was detectable in the adult human heart but hardly detectable in several other tissues. On the other hand, CXCL12δ, -ɛ, and -θ could be detected in several human adult and fetal tissues, with the pancreas expressing the highest levels (33). Recent studies have demonstrated the tissue expression of CXCL12γ in the adult heart (24). We previously demonstrated that CXCL12γ is the most potent anti-HIV-1 inhibitor, with the weakest chemotactic activity and no detectable enhancing activity for hematopoietic progenitor cell survival or replating capacity (2). The first three exons present in the CXCL12γ splice variant are identical to those found in CXCL12α and CXCL12β. The fourth exon, however, contains a large number of basic residues that result in at least four additional BBXB domains in addition to the conserved ²⁴KHLK²⁷ domain (33). It is not known whether the additional BBXB domains in the C terminus of CXCL12γ result in higher affinity for heparan sulfate proteoglycan (HSPG) and whether differences in HSPG binding could explain the observed anti-HIV-1 potency or the low chemotactic activity.The BBXB motif on RANTES has been suggested as the principal site for high-affinity binding to heparan sulfate. This binding controls receptor selectivity (22). It was previously demonstrated that a mutation of CXCL12α in the ²⁴KHLK²⁷ domain reduces the antiviral activity at least 50 percent without affecting the chemotactic activity (4, 29). It was proposed that chemokine binding to HSPG might concentrate the chemokine near the CXCR4 receptor or form a haptotactic chemokine gradient.In this study, we analyzed the mechanism of the potent antiviral activity of CXCL12γ. We examined the role of the additional BBXB domains of CXCL12γ in the observed biological activities of CXCL12γ. Mutations in CXCL12γ were introduced to knock out the BBXB domains either individually or in combination. We analyzed receptor internalization and binding affinities of the mutant chemokines for CXCR4 and HSPG. The results demonstrate that the potent anti-HIV activity of CXCL12γ is due to its efficient binding and internalization of CXCR4. The results provide important insight into the structure-function relationship of CXCL12γ and suggest that determinants other than the BBXB domains are involved in the observed biological activities of CXCL12γ.     

Bone adaptation to altered loading after spinal cord injury: a study of bone and muscle strength

Bone loss from the paralysed limbs after spinal cord injury (SCI) is well documented. Under physiological conditions, bones are adapted to forces which mainly emerge from muscle pull. After spinal cord injury (SCI), muscles can no longer contract voluntarily and are merely activated during spasms. Based on the Ashworth scale, previous research has suggested that these spasms may mitigate bone losses. We therefore wished to assess muscle forces after SCI with a more direct measure and compare it to measures of bone strength. We hypothesized that the bones in SCI patients would be in relation to the loss of muscle forces. Six male patients with SCI 6.4 (SD 4.3) years earlier and 6 age-matched, able-bodied control subjects were investigated. Bone scans from the right knee were obtained by pQCT. The knee extensor muscles were electrically stimulated via the femoral nerve, isometric knee extension torque was measured and patellar tendon force was estimated. Tendon force upon electrical stimulation in the SCI group was 75% lower than in the control subjects (p<0.01). Volumetric bone mineral density of the patella and of the proximal tibia epiphysis were 50% lower in the SCI group than in the control subjects (p<0.01). Cortical area was lower by 43% in the SCI patients at the proximal tibia metaphysis, and by 33% at the distal femur metaphysis. No group differences were found in volumetric cortical density. Close curvilinear relationships were found between stress and volumetric density for the tibia epiphysis (r(2)=0.90) and for the patella (r(2)=0.91). A weaker correlation with the tendon force was found for the cortical area of the proximal tibia metaphysis (r(2)=0.63), and none for the distal femur metaphysis. These data suggest that, under steady state conditions after SCI, epiphyseal bones are well adapted to the muscular forces. For the metaphysis of the long bones, such an adaptation appears to be less evident. The reason for this remains unclear.     

Decision making: the virtue of patience in primates

Marmoset monkeys devalue rewards requiring travel to acquire, but tamarin monkeys do not, despite the greater patience of marmosets when rewards are delayed in time. Such preference reversals, not predicted by standard economic theory, may reflect behavioral mechanisms adaptively specialized for different spatial and temporal patterns of foraging.     

Arabidopsis G‐protein interactome reveals connections to cell wall carbohydrates and morphogenesis

The heterotrimeric G‐protein complex is minimally composed of Gα, Gβ, and Gγ subunits. In the classic scenario, the G‐protein complex is the nexus in signaling from the plasma membrane, where the heterotrimeric G‐protein associates with heptahelical G‐protein‐coupled receptors (GPCRs), to cytoplasmic target proteins called effectors. Although a number of effectors are known in metazoans and fungi, none of these are predicted to exist in their canonical forms in plants. To identify ab initio plant G‐protein effectors and scaffold proteins, we screened a set of proteins from the G‐protein complex using two‐hybrid complementation in yeast. After deep and exhaustive interrogation, we detected 544 interactions between 434 proteins, of which 68 highly interconnected proteins form the core G‐protein interactome. Within this core, over half of the interactions comprising two‐thirds of the nodes were retested and validated as genuine in planta. Co‐expression analysis in combination with phenotyping of loss‐of‐function mutations in a set of core interactome genes revealed a novel role for G‐proteins in regulating cell wall modification.     

TV Time but Not Computer Time Is Associated with Cardiometabolic Risk in Dutch Young Adults

Background

TV time and total sedentary time have been positively related to biomarkers of cardiometabolic risk in adults. We aim to examine the association of TV time and computer time separately with cardiometabolic biomarkers in young adults. Additionally, the mediating role of waist circumference (WC) is studied.

Methods and Findings

Data of 634 Dutch young adults (18–28 years; 39% male) were used. Cardiometabolic biomarkers included indicators of overweight, blood pressure, blood levels of fasting plasma insulin, cholesterol, glucose, triglycerides and a clustered cardiometabolic risk score. Linear regression analyses were used to assess the cross-sectional association of self-reported TV and computer time with cardiometabolic biomarkers, adjusting for demographic and lifestyle factors. Mediation by WC was checked using the product-of-coefficient method.TV time was significantly associated with triglycerides (B = 0.004; CI = [0.001;0.05]) and insulin (B = 0.10; CI = [0.01;0.20]). Computer time was not significantly associated with any of the cardiometabolic biomarkers. We found no evidence for WC to mediate the association of TV time or computer time with cardiometabolic biomarkers.

Conclusions

We found a significantly positive association of TV time with cardiometabolic biomarkers. In addition, we found no evidence for WC as a mediator of this association. Our findings suggest a need to distinguish between TV time and computer time within future guidelines for screen time.