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排序方式: 共有337条查询结果,搜索用时 15 毫秒
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Lieve M.L. Laurens Stefanie Van Wychen Jordan P. McAllister Sarah Arrowsmith Thomas A. Dempster John McGowen Philip T. Pienkos 《Analytical biochemistry》2014
Accurate compositional analysis in biofuel feedstocks is imperative; the yields of individual components can define the economics of an entire process. In the nascent industry of algal biofuels and bioproducts, analytical methods that have been deemed acceptable for decades are suddenly critical for commercialization. We tackled the question of how the strain and biochemical makeup of algal cells affect chemical measurements. We selected a set of six procedures (two each for lipids, protein, and carbohydrates): three rapid fingerprinting methods and three advanced chromatography-based methods. All methods were used to measure the composition of 100 samples from three strains: Scenedesmus sp., Chlorella sp., and Nannochloropsis sp. The data presented point not only to species-specific discrepancies but also to cell biochemistry-related discrepancies. There are cases where two respective methods agree but the differences are often significant with over- or underestimation of up to 90%, likely due to chemical interferences with the rapid spectrophotometric measurements. We provide background on the chemistry of interfering reactions for the fingerprinting methods and conclude that for accurate compositional analysis of algae and process and mass balance closure, emphasis should be placed on unambiguous characterization using methods where individual components are measured independently. 相似文献
33.
B.P. Girish CH. Swetha P. Sreenivasula Reddy 《Biochemical and biophysical research communications》2014
The objective of the present study was to explore the site of synthesis of vitellogenin (Vtg) in fresh water edible crab, Oziothelphusa senex senex. Vtg cDNA fragments were isolated from the hepatopancreas of female crabs using RT-PCR method, and the deduced amino acid sequence of O. senex senex showed more than 60% identity with other brachyuran Vtg sequences. RT-PCR analysis showed that Vtg mRNA can be detected only in hepatopancreas of female Oziothelphusa but not in other tissues including eyestalks, Y-organs, mandibular organs, thoracic ganglion, hypodermis and ovary. Antibodies were raised against vitellin purified from the ovary of O. senex senex. Immunoprecipitation analysis revealed the presence of Vtg in the hepatopancreas of vitellogenic stage I females and in the hemolymph, hepatopancreas and ovary extracts from vitellogenic stage II females but absent in hemolymph and hepatopancreas extract of males. These results suggest that Vtg is synthesized only in hepatopancreas but not in the ovaries of O. senex senex. In addition, Vtg synthesized in hepatopancreas is transported to ovary through hemolymph. 相似文献
34.
Atanas V. Koulov Paul LaPointe Bingwen Lu Abbas Razvi Judith Coppinger Meng-Qiu Dong Jeanne Matteson Rob Laister Cheryl Arrowsmith John R. Yates III William E. Balch 《Molecular biology of the cell》2010,21(6):871-884
The activator of Hsp90 ATPase 1, Aha1, has been shown to participate in the Hsp90 chaperone cycle by stimulating the low intrinsic ATPase activity of Hsp90. To elucidate the structural basis for ATPase stimulation of human Hsp90 by human Aha1, we have developed novel mass spectrometry approaches that demonstrate that the N- and C-terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90 to modulate the ATP hydrolysis cycle and client activity in vivo. Mutations in both the N- and C-terminal domains of Aha1 impair its ability to bind Hsp90 and stimulate its ATPase activity in vitro and impair in vivo the ability of the Hsp90 system to modulate the folding and trafficking of wild-type and variant (ΔF508) cystic fibrosis transmembrane conductance regulator (CFTR) responsible for the inherited disease cystic fibrosis (CF). We now propose a general model for the role of Aha1 in the Hsp90 ATPase cycle in proteostasis whereby Aha1 regulates the dwell time of Hsp90 with client. We suggest that Aha1 activity integrates chaperone function with client folding energetics by modulating ATPase sensitive N-terminal dimer structural transitions, thereby protecting transient folding intermediates in vivo that could contribute to protein misfolding systems disorders such as CF when destabilized. 相似文献
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CH Balachiranjeevi Naik S. Bhaskar V. Abhilash S. Akanksha B. C. Viraktamath M. S. Madhav A. S. Hariprasad G. S. Laha M. S. Prasad S. M. Balachandran C. N. Neeraja M. Satendra Kumar P. Senguttuvel K. B. Kemparaju V. P. Bhadana T. Ram G. Harika H. K. Mahadeva Swamy S. K. Hajira A. Yugander K. Pranathi M. Anila G. Rekha M. B. V. N. Kousik T. Dilip Kumar R. K. Swapnil Archana Giri R. M. Sundaram 《Molecular breeding : new strategies in plant improvement》2015,35(7):1-12
37.
Lemak A Yee A Bezsonova I Dhe-Paganon S Arrowsmith CH 《Journal of biomolecular NMR》2011,51(1-2):185-190
Ube3A (also referred to as E6AP for E6 Associated Protein) is a E3 ubiquitin-protein ligase implicated in the development of Angelman syndrome by controlling degradation of synaptic protein Arc and oncogenic papilloma virus infection by controlling degradation of p53. This article describe the solution NMR structure of the conserved N-terminal domain of human Ube3A (residues 24-87) that contains two residues (Cys44 and Arg62) found to be mutated in patients with Angelman syndrome. The structure of this domain adopts a novel Zn-binding fold we called AZUL (Amino-terminal Zn-finger of Ube3a Ligase). The AZUL domain has a helix-loop-helix architecture with a Zn ion coordinated by four Cys residues arranged in Cys-X(4)-Cys-X(4)-Cys-X(28)-Cys motif. Three of the Zn-bound residues are located in a 23-residue long and well structured loop that connects two α-helicies. 相似文献
38.
Lemak A Gutmanas A Chitayat S Karra M Farès C Sunnerhagen M Arrowsmith CH 《Journal of biomolecular NMR》2011,49(1):27-38
The quality of protein structures determined by nuclear magnetic resonance (NMR) spectroscopy is contingent on the number
and quality of experimentally-derived resonance assignments, distance and angular restraints. Two key features of protein
NMR data have posed challenges for the routine and automated structure determination of small to medium sized proteins; (1)
spectral resolution – especially of crowded nuclear Overhauser effect spectroscopy (NOESY) spectra, and (2) the reliance on
a continuous network of weak scalar couplings as part of most common assignment protocols. In order to facilitate NMR structure
determination, we developed a semi-automated strategy that utilizes non-uniform sampling (NUS) and multidimensional decomposition
(MDD) for optimal data collection and processing of selected, high resolution multidimensional NMR experiments, combined it
with an ABACUS protocol for sequential and side chain resonance assignments, and streamlined this procedure to execute structure
and refinement calculations in CYANA and CNS, respectively. Two graphical user interfaces (GUIs) were developed to facilitate
efficient analysis and compilation of the data and to guide automated structure determination. This integrated method was
implemented and refined on over 30 high quality structures of proteins ranging from 5.5 to 16.5 kDa in size. 相似文献
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