Review: Other Helicobacter species

This article is a review of the most important, accessible, and relevant literature published between April 2018 and April 2019 in the field of Helicobacter species other than Helicobacter pylori. The initial part of the review covers new insights regarding the presence of gastric and enterohepatic non‐H. pylori Helicobacter species (NHPH) in humans and animals, while the subsequent section focuses on the progress in our understanding of the pathogenicity and evolution of these species. Over the last year, relatively few cases of gastric NHPH infections in humans were published, with most NHPH infections being attributed to enterohepatic Helicobacters. A novel species, designated “Helicobacter caesarodunensis,” was isolated from the blood of a febrile patient and numerous cases of human Helicobacter cinaedi infections underlined this species as a true emerging pathogen. With regard to NHPH in animals, canine/feline gastric NHPH cause little or no harm in their natural host; however they can become opportunistic when translocated to the hepatobiliary tract. The role of enterohepatic Helicobacter species in colorectal tumors in pets has also been highlighted. Several studies in rodent models have further elucidated the mechanisms underlying the development of NHPH‐related disease, and the extra‐gastric effects of a Helicobacter suis infection on brain homeostasis was also studied. Comparative genomics facilitated a breakthrough in the evolutionary history of Helicobacter in general and NHPH in particular. Investigation of the genome of Helicobacter apodemus revealed particular traits with regard to its virulence factors. A range of compounds including mulberries, dietary fiber, ginseng, and avian eggs which target the gut microbiota have also been shown to affect Helicobacter growth, with a potential therapeutic utilization and increase in survival.     

Is a short concentrate-finishing period in lambs raised on alfalfa pasture effective at reducing fat indoles contents and lightening meat colour?

Pasture-feeding in lambs has been associated with dark-coloured meat and high meat contents of volatile indoles (skatole and indole), which may be responsible for sensory defects. The risk of off-flavours is even higher when lambs graze alfalfa, because it is particularly rich in rapidly degradable proteins. Here, we investigated whether a short concentrate stall-finishing period in lambs that previously grazed alfalfa influences meat sensory quality traits. We compared three feeding treatments, using three groups of 10 male Romane lambs: grazing alfalfa (A), stall-feeding with concentrate and straw (S), and stall-finishing with concentrate and straw for 21 days after previously grazing alfalfa (AS). During stall-feeding, the concentrate was given at a level adjusted to achieve a similar growth pattern in all treatment groups, and the length of the trough was sufficient for all lambs to have access to the feeds at the same time. Lamb live weight and age at slaughter, and carcass conformation and fatness were similar for all treatment groups. Perirenal fat skatole content was lower in AS and S lambs than in A lambs (P < 0.001 and P < 0.05, respectively), and not significantly different between AS and S lambs. Perirenal fat indole and dorsal fat skatole concentrations were lower in AS lambs than in A lambs (P < 0.05 and P < 0.005, respectively), the other pairwise comparisons being not significant. There was no treatment effect on dorsal fat indole content. Longissimus et lumborum muscle colour coordinates differed between pasture-fed and stall-fed lambs, with a lower lightness (P < 0.005) and greater redness and hue angle (P < 0.001 and P < 0.01, respectively) in pasture-fed lambs, but muscle colour coordinates did not differ between A and AS lambs. A 21-d concentrate-based stall-finishing period in lambs previously raised on alfalfa pasture therefore markedly reduced fat indoles concentrations compared to lambs grazed on alfalfa until slaughter but did not change meat colour.     

Bioactive coatings based on polyelectrolyte multilayer architectures functionalized by embedded proteins, peptides or drugs

In recent years, considerable effort has been devoted to the design and controlled fabrication of structured materials with functional properties. The layer by layer buildup of polyelectrolyte multilayer films (PEM films) from oppositely charged polyelectrolytes offers new opportunities for the preparation of functionalized biomaterial coatings. This technique allows the preparation of supramolecular nano-architectures exhibiting specific properties in terms of control of cell activation and may also play a role in the development of local drug delivery systems. Peptides, proteins, chemically bound to polyelectrolytes, adsorbed or embedded in PEM films, have been shown to retain their biological activities.     

Aconitate decarboxylase 1 participates in the control of pulmonary Brucella infection in mice

Brucellosis is one of the most widespread bacterial zoonoses worldwide. Here, our aim was to identify the effector mechanisms controlling the early stages of intranasal infection with Brucella in C57BL/6 mice. During the first 48 hours of infection, alveolar macrophages (AMs) are the main cells infected in the lungs. Using RNA sequencing, we identified the aconitate decarboxylase 1 gene (Acod1; also known as Immune responsive gene 1), as one of the genes most upregulated in murine AMs in response to B. melitensis infection at 24 hours post-infection. Upregulation of Acod1 was confirmed by RT-qPCR in lungs infected with B. melitensis and B. abortus. We observed that Acod1^-/- C57BL/6 mice display a higher bacterial load in their lungs than wild-type (wt) mice following B. melitensis or B. abortus infection, demonstrating that Acod1 participates in the control of pulmonary Brucella infection. The ACOD1 enzyme is mostly produced in mitochondria of macrophages, and converts cis-aconitate, a metabolite in the Krebs cycle, into itaconate. Dimethyl itaconate (DMI), a chemically-modified membrane permeable form of itaconate, has a dose-dependent inhibitory effect on Brucella growth in vitro. Interestingly, structural analysis suggests the binding of itaconate into the binding site of B. abortus isocitrate lyase. DMI does not inhibit multiplication of the isocitrate lyase deletion mutant ΔaceA B. abortus in vitro. Finally, we observed that, unlike the wt strain, the ΔaceA B. abortus strain multiplies similarly in wt and Acod1^-/- C57BL/6 mice. These data suggest that bacterial isocitrate lyase might be a target of itaconate in AMs.     

Les foraminifères du Burdigalien moyen à supérieur de la région sud-aquitaine (golfe de Saubrigues, SW France)

Many exposures assigned to the Miocene formation of “Marnes de Saubrigues” (southwestern Aquitaine Basin) have been studied. Their revised stratigraphical allocation has made it possible to recognize mainly Middle to Late Burdigalian age deposits which have been widely sampled. They have been correlated with planktonic zones N6 pars-N7 and NN3-NN4 and locally dated 17.7 Ma with Sr isotopes. It is noteworthy that this chronological interval is only known in the southern Basin. An inventory of the rather abundant microplankton is provided, including series crossed by drillings in the Gulf of Biscay. These deposits yield a large diversity of benthic foraminifera, nearly 400 taxa, which can be considered as a reference fauna for western Europe Burdigalian. From a geographic point of view, it has been possible to subdivise the exposures into groups according to their bathymetry. Let us point out the first discovery of Borelis in the Burdigalian of France and in the northeastern Atlantic Miocene as well. Very rare specimens of Cycloclypeus are also present in the Aquitaine Basin. Among smaller foraminifera, the occurrence of Rosalina aguayoi, Pavonitina styriaca, the last appearance of Falsocibicides aquitanicus and the persistance of the genus Almaena must be emphasized. Several assemblages supply diatoms, rare radiolaria and sometimes abundant sponge spicules; the presence of these organisms, seldom reported from the Aquitaine Tertiary, might be linked to upwelling-type currents. Bachmayerella (inc. sed.) is uncommon and cited for the first time in the Burdigalian. A few taxonomical remarks and short notes are given for some species of foraminifera, and palaeoecological details as well. Numerous taxa are represented and comparisons with the foraminifera faunas mainly from the Lower-Middle Miocene of Western Mediterranean and Paratethys are sketched.     

Effects of space allowance on the welfare of dry sows kept in dynamic groups and fed with an electronic sow feeder

The minimal legal space allowance for grouped pregnant sows in the EU is 2.25 m²/sow. The effect of higher space per animal on agonistic behaviour and social stress of animals living in dynamic groups is not known.Two groups of 34 pregnant Belgian Landrace sows were housed in two pens of respectively 102 m² (3 m²/sow) and 76.5 m² (2.25 m²/sow). Each sow lived there for 15 weeks. Sows were fed through an electronic sow feeder. According to the dynamic system, one third of each group (i.e. 11 or 12 nearly parturient sows) was replaced every 5 weeks by the same number of recently inseminated sows. Welfare indicators were collected during six of these 5 week-periods: performance, agonistic behaviour, skin lesion score and salivary cortisol. No differences were observed for production parameters, or for fighting activity. However, the mean number of one-way aggressions, when observed during 2 h-periods at 3 and 8 days after grouping, was significantly lower in the large pen than in the small one (respectively 16 ± 2 versus 26 ± 3, p < 0.01, and 10 ± 2 versus 20 ± 5, p < 0.05). The mean number of injuries was also lower with the 3 m² space allowance, when collected on the introduced sows one, 2 and 3 weeks after grouping. Some contradictory differences in salivary cortisol were noted 2 and 26 h after mixing, but without reaching statistical significance. An available area 33% higher than the EU legal minimum reduced agonistic behaviour and consecutive wounds and thus induced better welfare conditions for sows living in dynamic groups and fed with an electronic sow feeder. The impact on productivity and social physiological stress need further research.     

Effects of backbone substitutions on the conformational behavior of Shigella flexneri O-antigens: implications for vaccine strategy

The O-antigen (O-Ag), the polysaccharide part of the lipopolysaccharide, is the major target of the serotype-specific protective humoral response elicited upon host infection by Shigella flexneri, the main causal agent of the endemic form of bacillary dysentery. The O-Ag repeat units (RUs) of 12 S. flexneri serotypes share the tetrasaccharide backbone →2)-α-l-Rhap-(1?→?2)-α-l-Rhap-(1?→?3)-α-l-Rhap-(1?→?3)-β-d-GlcpNAc-(1→, with site-selective glucosylation(s) and/or O-acetylation defining the serotypes. To investigate the conformational basis of serotype specificity, we sampled conformational behaviors during 60?ns of molecular dynamic simulations for oligosaccharides representing three RUs of each one of the O-Ags corresponding to serotypes 1a, 1b, 2a, 2b, 3a, 3b, 4a, 4b, 5a, 5b, X and Y, respectively. The calculated trajectories were checked by nuclear magnetic resonance (NMR) for 1a, 2a, 3a and 5a O-Ags. The simulations predict that in all O-Ags, but 1a and 1b, serotype-specific substitutions of the backbone do not induce any new backbone conformations compared with the linear type O-Ag Y, although they restrain locally the accessible conformational space. Moreover, the influence of any given substituent on the backbone is independent of the eventual presence of other substituents. Finally, only slight differences in conformational behavior between terminal and inner RUs were observed. These results suggest that the reported serotype-specificity of the protective immune response is not due to recognition of distinct backbone conformations, but to binding of the serotype-defining substituents in the O-Ag context. The gained knowledge is discussed in terms of impact on the development of a broad-serotype coverage vaccine.