Regulation of Plasmodium falciparum Development by Calcium-dependent Protein Kinase 7 (PfCDPK7)

Second messengers such as phosphoinositides and calcium are known to control diverse processes involved in the development of malaria parasites. However, the underlying molecular mechanisms and pathways need to be unraveled, which may be achieved by understanding the regulation of effectors of these second messengers. Calcium-dependent protein kinase (CDPK) family members regulate diverse parasitic processes. Because CDPKs are absent from the host, these kinases are considered as potential drug targets. We have dissected the function of an atypical CDPK from Plasmodium falciparum, PfCDPK7. The domain architecture of PfCDPK7 is very different from that of other CDPKs; it has a pleckstrin homology domain adjacent to the kinase domain and two calcium-binding EF-hands at its N terminus. We demonstrate that PfCDPK7 interacts with PI(4,5)P₂ via its pleckstrin homology domain, which may guide its subcellular localization. Disruption of PfCDPK7 caused a marked reduction in the growth of the blood stage parasites, as maturation of rings to trophozoites was markedly stalled. In addition, parasite proliferation was significantly attenuated. These findings shed light on an important role for PfCDPK7 in the erythrocytic asexual cycle of malaria parasites.     

Evaluation of synergistic effects of bacterial and cyanobacterial strains as biofertilizers for wheat

An investigation was undertaken to screen, select and evaluate a set of bacterial and cyanobacterial isolates from the wheat rhizosphere for their role as biofertilizers in wheat. From an initial set of 23 cyanobacterial strains and 110 bacterial isolates from wheat rhizospheric soil, 3 bacterial and 3 cyanobacterial strains were selected based on their plant growth promoting potential under laboratory and controlled greenhouse conditions. In vitro compatibility studies revealed positive interactions among the six strains. Pot experiments were conducted with wheat variety HD 2687, with a total of 51 treatments, along with recommended fertilizer controls. Various combinations of the selected set of three bacterial (PW1, PW5 and PW7) and three cyanobacterial isolates (CW1, CW2 and CW3) were used along with 1/3 N and full dose of P and K fertilizers. Significant enhancement in the soil microbiological (Dehydrogenase activity, FDA hydrolase, Alkaline phosphatase and microbial biomass) and plant growth/yield parameters were recorded. Observations revealed a two-fold increase in panicle weight in selected combinations (PW1+PW7+CW3; PW1+ CW1+CW2/CW1+CW3; CW2+CW3), as compared to control treatment involving full dose of chemical fertilizers. Such combinations, which also provided N savings of 40–80 kg N/ha are being further evaluated in field experiments. This study for the first time illustrated the positive and dynamic interactions among bacterial and cyanobacterial strains and their promise in integrated nutrient management of wheat crop.     

Quantification of diatom and dinoflagellate biomasses in coastal marine seawater samples by real-time PCR

Two real-time PCR assays targeting the small-subunit (SSU) ribosomal DNA (rDNA) were designed to assess the proportional biomass of diatoms and dinoflagellates in marine coastal water. The reverse primer for the diatom assay was designed to be class specific, and the dinoflagellate-specific reverse primer was obtained from the literature. For both targets, we used universal eukaryotic SSU rDNA forward primers. Specificity was confirmed by using a BLAST search and by amplification of cultures of various phytoplankton taxa. Reaction conditions were optimized for each primer set with linearized plasmids from cloned SSU rDNA fragments. The number of SSU rDNA copies per cell was estimated for six species of diatoms and nine species of dinoflagellates; these were significantly correlated to the biovolumes of the cells. Nineteen field samples were collected along the Swedish west coast and subjected to the two real-time PCR assays. The linear regression of the proportion of SSU rDNA copies of dinoflagellate and diatom origin versus the proportion of dinoflagellate and diatom biovolumes or biomass per liter was significant. For diatoms, linear regression of the number of SSU rDNA copies versus biovolume or biomass per liter was significant, but no such significant correlation was detected in the field samples for dinoflagellates. The method described will be useful for estimating the proportion of dinoflagellate versus diatom biovolume or biomass and the absolute diatom biovolume or biomass in various aquatic disciplines.     

RNA thermosensors facilitate Streptococcus pneumoniae and Haemophilus influenzae immune evasion

Bacterial meningitis is a major cause of death and disability in children worldwide. Two human restricted respiratory pathogens, Streptococcus pneumoniae and Haemophilus influenzae, are the major causative agents of bacterial meningitis, attributing to 200,000 deaths annually. These pathogens are often part of the nasopharyngeal microflora of healthy carriers. However, what factors elicit them to disseminate and cause invasive diseases, remain unknown. Elevated temperature and fever are hallmarks of inflammation triggered by infections and can act as warning signals to pathogens. Here, we investigate whether these respiratory pathogens can sense environmental temperature to evade host complement-mediated killing. We show that productions of two vital virulence factors and vaccine components, the polysaccharide capsules and factor H binding proteins, are temperature dependent, thus influencing serum/opsonophagocytic killing of the bacteria. We identify and characterise four novel RNA thermosensors in S. pneumoniae and H. influenzae, responsible for capsular biosynthesis and production of factor H binding proteins. Our data suggest that these bacteria might have independently co-evolved thermosensing abilities with different RNA sequences but distinct secondary structures to evade the immune system.     

Theoretical Simulation and Focused Ion Beam Fabrication of Gold Nanostructures for Surface-Enhanced Raman Scattering (SERS)

This paper describes the fabrication of gold nanopillar and nanorod arrays and theoretical calculations of electromagnetic fields (EMFs) around ordered arrangements of these nanostructures. The EMFs of both single nanopillars and dimers of nanopillars—having nanoscale gaps between the two adjacent nanopillars forming the dimers—are simulated in this work by employing the finite-difference time-domain method. In the case of simulations for dimers of nanopillars, the nanoscale gaps between the nanopillars are varied between 5 and 20 nm, and calculations of the electromagnetic fields in the vicinity of the nanopillars and in the gaps between the nanopillars were carried out. Fabrication of gold nanopillars in a controlled manner for forming SERS substrates involves focused ion beam (FIB) milling. The nanostructures were fabricated on gold-coated silica, mica, and quartz planar substrates as well as on gold-coated tips of four mode and multimode silica optical fibers.