Genes invoked in the ovarian transition to menopause

Menopause and the associated declines in ovarian function are major health issues for women. Despite the widespread health impact of this process, the molecular mechanisms underlying the aging-specific decline in ovarian function are almost completely unknown. To provide the first gene–protein analysis of the ovarian transition to menopause, we have established and contrasted RNA gene expression profiles and protein localization and content patterns in healthy young and perimenopausal mouse ovaries. We report a clear distinction in specific mRNA and protein levels that are noted prior to molecular evidence of steroidogenic failure. In this model, ovarian reproductive aging displays similarities with chronic inflammation and increased sensitivity to environmental cues. Overall, our results indicate the presence of mouse climacteric genes that are likely to be major players in aging-dependent changes in ovarian function.     

Green plastids, maximal PSII photochemical efficiency and starch content of inner stem tissues of three Mediterranean woody species during the year

Wood and pith of 1–2-year-old stems of three woody species with different life strategies common in the Mediterranean basin were studied during the year regarding (i) the occurrence of green plastids, (ii) their maximal photosystem II photochemical efficiency (F_v/F_m) and (iii) their starch content. Green plastids were identified from the red chlorophyll auto-fluorescence under epi-fluorescence microscope, F_v/F_m was estimated using imaging-PAM fluorometry and starch content was recorded under bright field microscope after iodine staining. The evergreen sclerophyll Nerium oleander, the summer deciduous Euphorbia acanthothamnos and the winter deciduous species Platanus orientalis were selected for the study.

Epi-fluorescence microscopy revealed that (i) all species possess abundant green plastids in their wood ray and pith cells throughout the year. In the winter deciduous species chlorophyll fluorescence was found to be strong during the leafless period. By contrast, in the evergreen and the summer deciduous species chlorophyll fluorescence was found uniformly bright during the year; (ii) F_v/F_m value variation during the year seems to be species-specific: in the wood of N. oleander it remains unchanged whereas in the pith it is low during spring–summer; in both tissues of E. acanthothamnos F_v/F_m value reaches maximal value during spring and in P. orientalis during autumn; (iii) in N. oleander and E. acanthothamnos starch is accumulated during spring, whereas in P. orientalis starch content is high during winter.

The scanning electron microscopy (SEM) investigation revealed that the stem epidermis of all three species lacks stomata and formation of lenticels is delayed. Provided that gas exchange is therefore minimized and that PSII photochemical efficiency of inner stem tissues is relatively high, it is further supported that green plastids of wood ray and pith cells may help toward the re-fixation of the internally respired CO₂.     

Synthesis and post-translational processing of proenkephalin in light- and dark- adapted chicken retinas

Synthesis and post-translational processing of retinal proenkephalin in response to the light or darkness were studied in newly hatched chickens using chromatography, enzymatic digestion (trypsin-carboxypeptidase B) and radioimmunoassay. We found that the concentration of free [Met⁵]-enkephalin in crude retinal extracts increased with the time in the light and decreased in the dark. This effect was directly dependent on illumination, rather than the consequence of an endogenous circadian rhythm. In contrast, the total amount of cryptic [Met⁵]-enkephalin (in larger enkephalin-containing polypeptides) remained constant in all stages of the light/dark cycle. We also showed that the relative amounts of cryptic [Met⁵]-enkephalin stored at different molecular weights remained constant, and that the concentrations of three identified proenkephalin-derived peptides, [Met⁵]-enkephalin, [Leu⁵]-enkephalin and [Met⁵]-enkephalin-Arg⁶-Phe⁷, were higher in the light-adapted than in the dark-adapted retina; but the relative amounts (ratios) of the three proenkephalin-derived peptides stored in the light and in the dark were equal. These data are consistent with the hypothesis that synthesis and processing of proenkephalin proceed at a constant rate and with similar pattern independent of illumination or adaptation, whereas the processed enkephalins are released preferentially in the darkness and accumulated in the light.     

Metabolic engineering of Saccharomyces cerevisiae for itaconic acid production

Renewable alternatives for petroleum-derived chemicals are achievable through biosynthetic production. Here, we utilize Saccharomyces cerevisiae to enable the synthesis of itaconic acid, a molecule with diverse applications as a petrochemical replacement. We first optimize pathway expression within S. cerevisiae through the use of a hybrid promoter. Next, we utilize sequential, in silico computational genome-scanning to identify beneficial genetic perturbations that are metabolically distant from the itaconic acid synthesis pathway. In this manner, we successfully identify three non-obvious genetic targets (?ade3 ?bna2 ?tes1) that successively improve itaconic acid titer. We establish that focused manipulations of upstream pathway enzymes (localized refactoring) and enzyme re-localization to both mitochondria and cytosol fail to improve itaconic acid titers. Finally, we establish a higher cell density fermentation that ultimately achieves itaconic acid titer of 168 mg/L, a sevenfold improvement over initial conditions. This work represents an attempt to increase itaconic acid production in yeast and demonstrates the successful utilization of computationally guided genetic manipulation to increase metabolic capacity.     

Genetic control of high density lipoprotein-cholesterol in AcB/BcA recombinant congenic strains of mice

Epidemiological studies show that high HDL-cholesterol (HDLc) decreases the risk of cardiovascular disease. To map genes controlling lipid metabolism, particularly HDLc levels, we screened the plasma lipids of 36 AcB/BcA RC mouse strains subjected to either a normal or a high-fat/cholesterol diet. Strains BcA68 and AcB65 showed deviant HDLc plasma levels compared with the parental A/J and C57BL/6J strains; they were thus selected to generate informative F2 crosses. Linkage analyses in the AcB65 strain identified a locus on chromosome 4 (Hdlq78) responsible for high post-high fat diet HDLc levels. This locus has been previously associated at genome-wide significance to two regions in the human genome. A second linkage analysis in strain BcA68 identified linkage in the vicinity of a gene cluster known to control HDLc levels. Sequence analysis of these candidates identified a de novo, loss-of-function mutation in the ApoA1 gene of BcA68 that prematurely truncates the ApoA1 protein. The possibility of dissecting the specific effects of this new ApoA1 deficiency in the context of isogenic controls makes the BcA68 mouse a valuable new tool.     

Retinol-binding protein 4 inhibits insulin signaling in adipocytes by inducing proinflammatory cytokines in macrophages through a c-Jun N-terminal kinase- and toll-like receptor 4-dependent and retinol-independent mechanism

Retinol-binding protein 4 (RBP4), the sole retinol transporter in blood, is secreted from adipocytes and liver. Serum RBP4 levels correlate highly with insulin resistance, other metabolic syndrome factors, and cardiovascular disease. Elevated serum RBP4 causes insulin resistance, but the molecular mechanisms are unknown. Here we show that RBP4 induces expression of proinflammatory cytokines in mouse and human macrophages and thereby indirectly inhibits insulin signaling in cocultured adipocytes. This occurs through activation of c-Jun N-terminal protein kinase (JNK) and Toll-like receptor 4 (TLR4) pathways independent of the RBP4 receptor, STRA6. RBP4 effects are markedly attenuated in JNK1-/- JNK2-/- macrophages and TLR4-/- macrophages. Because RBP4 is a retinol-binding protein, we investigated whether these effects are retinol dependent. Unexpectedly, retinol-free RBP4 (apo-RBP4) is as potent as retinol-bound RBP4 (holo-RBP4) in inducing proinflammatory cytokines in macrophages. Apo-RBP4 is likely to be physiologically significant since RBP4/retinol ratios are increased in serum of lean and obese insulin-resistant humans compared to ratios in insulin-sensitive humans, indicating that higher apo-RBP4 is associated with insulin resistance independent of obesity. Thus, RBP4 may cause insulin resistance by contributing to the development of an inflammatory state in adipose tissue through activation of proinflammatory cytokines in macrophages. This process reveals a novel JNK- and TLR4-dependent and retinol- and STRA6-independent mechanism of action for RBP4.     

Molecular systematics of Batrachoseps (Caudata, Plethodontidae) in southern California and Baja California: mitochondrial-nuclear DNA discordance and the evolutionary history of B. major

Inferences about species boundaries and evolutionary history are often complicated by discordance between datasets. In recent times, considerable effort has been devoted to understanding the causes of discordance between the patterns of genetic variation and structure shown by different unlinked molecular markers. The genus Batrachoseps (Caudata, Plethodontidae), the most diverse group of salamanders in western North America, is characterized by limited morphological variation and discordance between molecular datasets, making it a challenging group for taxonomists but also a good model to test newly developed analytical methods to sort out possible sources of discordance. In this study, we present a comprehensive assessment of the evolutionary history of B. major, one of the most widespread species in the genus, based on extensive sampling and phylogenetic and coalescent analyses of data from mitochondrial and nuclear markers. We found non-monophyly of mtDNA in B. major, with two lineages (northern and southern) that are more closely related to other species in the genus than to each other, but this division was not apparent in nuclear DNA. Despite non-monophyly in gene trees, species tree analyses recovered a sister group relationship between the two lineages of B. major, and coalescent simulations suggested that there is no need to invoke gene flow to account for the discordance across gene trees. The possibility that these two lineages represent sister, cryptic taxa, is discussed in the context of Bayesian methods of species/lineage delineation. Contrary to prior expectations, B. major has experienced extensive diversification on the Baja California Peninsula, where four endemic lineages have persisted for at least 4 million years.