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81.
ABSTRACT: BACKGROUND: Chronic gastritis, peptic ulcer disease, and gastric cancer have been shown to be related toinfection with Helicobacter pylori (H. pylori). Two major virulence factors of H. pylori,CagA and VacA, have been associated with these sequelae of the infection. In this study, totalDNA was isolated from gastric biopsy specimens to assess the cagA and vacA genotypes. RESULTS: Variations in H. pylori cagA EPIYA motifs and the mosaic structure of vacA s/m/i/dayregions were analysed in 155 H. pylori-positive gastric biopsies from 71 individuals usingPCR and sequencing. Analysis of a possible association between cagA and vacA genotypesand gastroduodenal pathogenesis was made by logistic regression analysis. We found that H. pylori strains with variation in the number of cagA EPIYA motif variants present in the samebiopsy correlated with peptic ulcer, while occurrence of two or more EPIYA-C motifs wasassociated with atrophy in the gastric mucosa. No statistically significant relation betweenvacA genotypes and gastroduodenal pathogenesis was observed. CONCLUSIONS: The results of this study indicate that cagA genotypes may be important determinants in thedevelopment of gastroduodenal sequelae of H. pylori infection. In contrast to other studies,vacA genotypes were not related to disease progression or outcome. In order to fullyunderstand the relations between cagA, vacA and gastroduodenal pathogenesis, themechanisms by which CagA and VacA act and interact need to be further investigated. 相似文献
82.
Gaál EI Salo P Kristiansson K Rehnström K Kettunen J Sarin AP Niemelä M Jula A Raitakari OT Lehtimäki T Eriksson JG Widen E Günel M Kurki M von und Zu Fraunberg M Jääskeläinen JE Hernesniemi J Järvelin MR Pouta A;International Consortium for Blood Pressure Genome-Wide Association Studies Newton-Cheh C Salomaa V Palotie A Perola M 《PLoS genetics》2012,8(3):e1002563
Although genome-wide association studies (GWAS) have identified hundreds of complex trait loci, the pathomechanisms of most remain elusive. Studying the genetics of risk factors predisposing to disease is an attractive approach to identify targets for functional studies. Intracranial aneurysms (IA) are rupture-prone pouches at cerebral artery branching sites. IA is a complex disease for which GWAS have identified five loci with strong association and a further 14 loci with suggestive association. To decipher potential underlying disease mechanisms, we tested whether there are IA loci that convey their effect through elevating blood pressure (BP), a strong risk factor of IA. We performed a meta-analysis of four population-based Finnish cohorts (n(FIN) = 11 266) not selected for IA, to assess the association of previously identified IA candidate loci (n = 19) with BP. We defined systolic BP (SBP), diastolic BP, mean arterial pressure, and pulse pressure as quantitative outcome variables. The most significant result was further tested for association in the ICBP-GWAS cohort of 200 000 individuals. We found that the suggestive IA locus at 5q23.2 in PRDM6 was significantly associated with SBP in individuals of European descent (p(FIN) = 3.01E-05, p(ICBP-GWAS) = 0.0007, p(ALL) = 8.13E-07). The risk allele of IA was associated with higher SBP. PRDM6 encodes a protein predominantly expressed in vascular smooth muscle cells. Our study connects a complex disease (IA) locus with a common risk factor for the disease (SBP). We hypothesize that common variants in PRDM6 can contribute to altered vascular wall structure, hence increasing SBP and predisposing to IA. True positive associations often fail to reach genome-wide significance in GWAS. Our findings show that analysis of traditional risk factors as intermediate phenotypes is an effective tool for deciphering hidden heritability. Further, we demonstrate that common disease loci identified in a population isolate may bear wider significance. 相似文献
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84.
Background
Uncertainty persists over the environmental effects of genetically-engineered crops that produce the insecticidal Cry proteins of Bacillus thuringiensis (Bt). We performed meta-analyses on a modified public database to synthesize current knowledge about the effects of Bt cotton, maize and potato on the abundance and interactions of arthropod non-target functional guilds.Methodology/Principal Findings
We compared the abundance of predators, parasitoids, omnivores, detritivores and herbivores under scenarios in which neither, only the non-Bt crops, or both Bt and non-Bt crops received insecticide treatments. Predators were less abundant in Bt cotton compared to unsprayed non-Bt controls. As expected, fewer specialist parasitoids of the target pest occurred in Bt maize fields compared to unsprayed non-Bt controls, but no significant reduction was detected for other parasitoids. Numbers of predators and herbivores were higher in Bt crops compared to sprayed non-Bt controls, and type of insecticide influenced the magnitude of the difference. Omnivores and detritivores were more abundant in insecticide-treated controls and for the latter guild this was associated with reductions of their predators in sprayed non-Bt maize. No differences in abundance were found when both Bt and non-Bt crops were sprayed. Predator-to-prey ratios were unchanged by either Bt crops or the use of insecticides; ratios were higher in Bt maize relative to the sprayed non-Bt control.Conclusions/Significance
Overall, we find no uniform effects of Bt cotton, maize and potato on the functional guilds of non-target arthropods. Use of and type of insecticides influenced the magnitude and direction of effects; insecticde effects were much larger than those of Bt crops. These meta-analyses underscore the importance of using controls not only to isolate the effects of a Bt crop per se but also to reflect the replacement of existing agricultural practices. Results will provide researchers with information to design more robust experiments and will inform the decisions of diverse stakeholders regarding the safety of transgenic insecticidal crops. 相似文献85.
Pollen productivity estimates of key European plant taxa for quantitative reconstruction of past vegetation: a review 总被引:2,自引:2,他引:0
Anna Broström Anne Birgitte Nielsen Marie-José Gaillard Kari Hjelle Florence Mazier Heather Binney Jane Bunting Ralph Fyfe Viveca Meltsov Anneli Poska Satu Räsänen Welmoed Soepboer Henrik von Stedingk Henna Suutari Shinya Sugita 《Vegetation History and Archaeobotany》2008,17(5):461-478
Information on the spatial distribution of past vegetation on local, regional and global scales is increasingly used within
climate modelling, nature conservancy and archaeology. It is possible to obtain such information from fossil pollen records
in lakes and bogs using the landscape reconstruction algorithm (LRA) and its two models, REVEALS and LOVE. These models assume
that reliable pollen productivity estimates (PPEs) are available for the plant taxa involved in the quantitative reconstructions
of past vegetation, and that PPEs are constant through time. This paper presents and discusses the PPEs for 15 tree and 18
herb taxa obtained in nine study areas of Europe. Observed differences in PPEs between regions may be explained by methodological
issues and environmental variables, of which climate and related factors such as reproduction strategies and growth forms
appear to be the most important. An evaluation of the PPEs at hand so far suggests that they can be used in modelling applications
and quantitative reconstructions of past vegetation, provided that consideration of past environmental variability within
the region is used to inform selection of PPEs, and bearing in mind that PPEs might have changed through time as a response
to climate change. Application of a range of possible PPEs will allow a better evaluation of the results. 相似文献
86.
Marie-José Gaillard Shinya Sugita M. Jane Bunting Richard Middleton Anna Broström Christopher Caseldine Thomas Giesecke Sophie E. V. Hellman Sheila Hicks Kari Hjelle Catherine Langdon Anne-Birgitte Nielsen Anneli Poska Henrik von Stedingk Sim Veski 《Vegetation History and Archaeobotany》2008,17(5):419-443
Information on past land cover in terms of absolute areas of different landscape units (forest, open land, pasture land, cultivated
land, etc.) at local to regional scales is needed to test hypotheses and answer questions related to climate change (e.g.
feedbacks effects of land-cover change), archaeological research, and nature conservancy (e.g. management strategy). The palaeoecological
technique best suited to achieve quantitative reconstruction of past vegetation is pollen analysis. A simulation approach
developed by Sugita (the computer model POLLSCAPE) which uses models based on the theory of pollen analysis is presented together
with examples of application. POLLSCAPE has been adopted as the central tool for POLLANDCAL (POLlen/LANdscape CALibration),
an international research network focusing on this topic. The theory behind models of the pollen–vegetation relationship and
POLLSCAPE is reviewed. The two model outputs which receive greatest attention in this paper are the relevant source area of
pollen (RSAP) and pollen loading in mires and lakes. Six examples of application of POLLSCAPE are presented, each of which
explores a possible use of the POLLANDCAL tools and a means of validating or evaluating the models with empirical data. The
landscape and vegetation factors influencing the size of the RSAP, the importance of pollen productivity estimates (PPEs)
for the model outputs, the detection of small and rare patches of plant taxa in pollen records, and quantitative reconstructions
of past vegetation and landscapes are discussed on the basis of these examples. The simulation approach is seen to be useful
both for exploring different vegetation/landscape scenarios and for refuting hypotheses. 相似文献
87.
Burén J Lai YC Lundgren M Eriksson JW Jensen J 《Archives of biochemistry and biophysics》2008,474(1):91-101
Glucocorticoids initiate whole body insulin resistance and the aim of the present study was to investigate effects of dexamethasone on protein expression and insulin signalling in muscle and fat tissue. Rats were injected with dexamethasone (1 mg/kg/day, i.p.) or placebo for 11 days before insulin sensitivity was evaluated in vitro in soleus and epitrochlearis muscles and in isolated epididymal adipocytes. Dexamethasone treatment reduced insulin-stimulated glucose uptake and glycogen synthesis by 30-70% in epitrochlearis and soleus, and insulin-stimulated glucose uptake by ∼40% in adipocytes. 8-bromo-cAMP-stimulated lipolysis was ∼2-fold higher in adipocytes from dexamethasone-treated rats and insulin was less effective to inhibit cAMP-stimulated lipolysis. A main finding was that dexamethasone decreased expression of PKB and insulin-stimulated Ser473 and Thr308 phosphorylation in both muscles and adipocytes. Expression of GSK-3 was not influenced by dexamethasone treatment in muscles or adipocytes and insulin-stimulated GSK-3β Ser9 phosphorylation was reduced in muscles only. A novel finding was that glycogen synthase (GS) Ser7 phosphorylation was higher in both muscles from dexamethasone-treated rats. GS expression decreased (by 50%) in adipocytes only. Basal and insulin-stimulated GS Ser641 and GS Ser645,649,653,657 phosphorylation was elevated in epitrochlearis and soleus muscles and GS fractional activity was reduced correspondingly. In conclusion, dexamethasone treatment (1) decreases PKB expression and insulin-stimulated phosphorylation in both muscles and adipocytes, and (2) increases GS phosphorylation (reduces GS fractional activity) in muscles and decreases GS expression in adipocytes. We suggest PKB and GS as major targets for dexamethasone-induced insulin resistance. 相似文献
88.
Gergely Torda Sebastian Schmidt-Roach Lesa M. Peplow Petra Lundgren Madeleine J. H. van Oppen 《PloS one》2013,8(3)
Pocillopora damicornis (Linnaeus, 1758; Scleractinia, Pocilloporidae) has recently been found to comprise at least five distinct genetic lineages in Eastern Australia, some of which likely represent cryptic species. Due to similar and plastic gross morphology of these lineages, field identification is often difficult. Here we present a quick, cost effective genetic assay as well as three novel microsatellite markers that distinguish the two most common lineages found on the Great Barrier Reef. The assay is based on PCR amplification of two regions within the mitochondrial putative control region, which show consistent and easily identifiable fragment size differences for the two genetic lineages after Alu1 restriction enzyme digestion of the amplicons. 相似文献
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90.