Structure and Function of the Plant Alternative Oxidase: Its Putative Role in the Oxygen Defence Mechanism

Current understanding of the structure and function of the plant alternative oxidase is reviewed. In particular, the role of the oxidase in the protection of tissues against oxidative stress is developed.     

Genetic diversity and isolation in African Buffalo (Syncerus caffer)

We studied genetic diversity in 58 buffalo from the Kruger National Park (KNP) and Willem Pretorius Nature Reserve (WPNR). Thirty-three protein-encoding loci were resolved; three were polymorphic. Average heterozygosity (H) values did not differ substantially between adult and sub-adult animals from the KNP (2.65 and 2.89%, respectively), but were lower in animals from the isolated WPNR herd (H = 1.48% and only 3% polymorphic loci compared to 9.1%). Representative levels of genetic diversity exist in the large but disease-carrying herd, whereas the smaller disease-free herds available for translocations appear less polymorphic.     

THE MECHANISM OF DAYLENGTH PERCEPTION IN THE RED ALGA ACROSYMPHYTON PURPURIFERUM1

The red alga Acrosymphton purpuriferum (J. Ag.) Sjöst. (Dumontiaceae) is a short day plant in the formation of its tetrasporangia. Tetrasporogenesis was not inhibited by 1 h night-breaks when given at any time during the long (16 h) dark period (tested at 2 h intervals). However, tetrasporogenesis was inhibited when short (8 h) main photoperiods were extended beyond the critical daylength with supplementary light periods (8 h) at an irradiance below photosynthetic compensation. The threshold irradiance below photosynthetic compensation. The threshold irradiance for inhibition of tetrasporogenesis was far lower when supplementary light periods preceded the main photoperiod than when they followed it (< 0.05 μmol.m⁻². s⁻¹ vs. 3 μmol.m⁻².s⁻¹. The threshold level also depended on the irradiance given during the main photoperiod and was higher after a main photoperiod in bright light than after one in dim light (threshold at 3 μmol.m⁻².s⁻¹ after a main photoperiod at ca. 65 μmol.m⁻².s⁻¹ vs. threshold at <0.5 μmol.m⁻².s⁻¹ after a main photoperiod at ca. 35 μmol.m⁻².s⁻¹. The spectral dependence of the response was investigated in day-extensions (supplementary light period (8 h) after main photoperiod (8 h) at 48 μmol. m⁻².s⁻¹) with narrow band coloured light. Blue light (λ= 420 nm) was most effective, with 50% inhibition at a quantum-dose of 2.3 mmol.m⁻². However, yellow (λ= 563 nm) and red light (λ= 600 nm; λ= 670 nm) also caused some inhibition, with ca. 30% of the effectiveness of blue light. Only far-red light (λ= 710 nm; λ= 730 nm) was relatively ineffective with no significant inhibition of tetrasporogenesis at quantum-doses of up to 20 mmol. m⁻².     

A straightforward approach to isolate DNA sequences with potential linkage to the retinoblastoma locus

Summary From a human-Chinese hamster somatic cell hybrid a clone was derived containing chromosome 13 in duplicate as its only human material. This clone was used to construct a human chromosome 13-specific recombinant DNA-library. Overlapping Sau3AI DNA sequences (11.9–17.2 kb) from the cell hybrid were inserted into the lambda phage vector EMBL4. From eleven recombinants having a human insert thirteen putative unique DNA sequences were isolated and cloned into the plasmid vector pBR329. A human-mouse hybrid containing a human chromosome 13 with a deletion of 13q14 and lacking its undeleted homologue was constructed to be used in a selection procedure for DNA sequences belonging to band q14. Three probes originating from two different phages were assigned to 13q14 because they did not hybridise to DNA from this cell hybrid. One of these 13q14 probes detects a low frequency (2/44) Msp I restriction fragment length polymorphism. The probes are now being used for screening a cosmid library to find adjacent polymorphic sequences with a RFLP information content suitable for application in the diagnosis of hereditary retinoblastoma.Preliminary reports of these experiments were presented at the 8th International Workshop on Human Gene Mapping, Helsinki, August 4–10, 1985, and the 13th International Congress of Biochemistry, Amsterdam, August 25–30, 1985 (Scheffer et al. 1985a,b)     

Alternative pathway respiration in vivo of potato tuber callus grown at various temperatures

During incubation of potato tuber discs ( Solanum tuberosum L. cv. Bintje) on a callus-inducing medium at 28°C, a high capacity of in vivo alternative pathway respiration develops (75% of uninhibited respiration is azide-resistant). When callus induction takes place at 8°C, only 45% of respiration is resistant to azide. In the lag phase of growth the activity of alternative pathway is low. during the exponential growth phase the activity reaches its maximal rate. This in vivo activity is of the same size at both culture temperatures. As a consequence a greater part of alternative pathway capacity is operating in uninhibited respiration during growth at low temperatures.     

Light penetration and the interrelationships between optical parameters in a turbid subtropical impoundment

An investigation of water transparency characteristics and light attenuation by waters of a turbid subtropical impoundment showed that allochthonous inputs of silt during summer floods, impoundment morphometry, and the warm monomictic thermal cycle were the main factors regulating the temporal and spatial variations in water transparency. Statistically significant relationships between the Secchi disc transparency, turbidity of the surface water, mean diffuse attenuation coefficient and beam attenuation coefficient, were established. These relationships allowed for an approximation of the 1 per cent of surface light intensity depth to be made by using any of the four parameters. The attenuation of blue light was greater than that of red light, owing to the effects of suspended clay particles on the spectral attenuation of light.     

DNA methylation and chromatin accessibility predict age in the domestic dog

Across mammals, the epigenome is highly predictive of chronological age. These “epigenetic clocks,” most of which have been built using DNA methylation (DNAm) profiles, have gained traction as biomarkers of aging and organismal health. While the ability of DNAm to predict chronological age has been repeatedly demonstrated, the ability of other epigenetic features to predict age remains unclear. Here, we use two types of epigenetic information—DNAm, and chromatin accessibility as measured by ATAC-seq—to develop age predictors in peripheral blood mononuclear cells sampled from a population of domesticated dogs. We measured DNAm and ATAC-seq profiles for 71 dogs, building separate predictive clocks from each, as well as the combined dataset. We also use fluorescence-assisted cell sorting to quantify major lymphoid populations for each sample. We found that chromatin accessibility can accurately predict chronological age (R²_ATAC = 26%), though less accurately than the DNAm clock (R²_DNAm = 33%), and the clock built from the combined datasets was comparable to both (R²_combined = 29%). We also observed various populations of CD62L+ T cells significantly correlated with dog age. Finally, we found that all three clocks selected features that were in or near at least two protein-coding genes: BAIAP2 and SCARF2, both previously implicated in processes related to cognitive or neurological impairment. Taken together, these results highlight the potential of chromatin accessibility as a complementary epigenetic resource for modeling and investigating biologic age.     

Endocytes and breakdown of ribonuclease oligomers by sinusoidal rat liver cells in vivo: II. Effect of charge

Experiments presented in this paper suggest that sinusoidal rat liver cells recognize basic on proteins and that this recognition results in endocytosis of the proteins. Evidence for involvement of basic groups was obtained in two ways.Firstly, we changedd the opsitively charged amino groups of the cross-linked ribonuclease molecules to neutral or negative by acetylation or succinylation, respectively. The modified proteins did not contain easily reducible disulfide bonds and they were not very sensitive to endoproteases, suggesting that they were not denatured by the acetylation procedures. Acetylation and succinylation reduced uptake of the injected cross-linked ribonuclease derivatives by liver and spleen and abolsihed their rapid clearance from plasma. In nephrectomized rats about 75% of the polymer, 36% of the acetylated polumer and 32% of the succinylated polumer were endocytosed by liver after 6 h. For the dimer fraction these values were 59%, 23% and 27%, respectively. Autoradiography and subcellular fractionation of liver 30 min post-injection localized the acetylated polumer in the lysosomal/microsomal fraction of sinusoidal liver cessls, probably endothelial cells.Secondly, a positive correlation was found between binding of a number of ribonuclease derivatives of the cation exchanges SP-Sephadex G-25 and the rate of endocytosis by sinusoidal liver cells.