The Indignity of Relative Concepts of Animal Dignity: A Qualitative Study of People Working with Nonhuman Animals

The Swiss animal welfare legislation is considered to be one of the strictest such laws worldwide. One unique feature is the inclusion of the concept of “dignity of the creature” and, more precisely, animal dignity. We interviewed 19 people from Switzerland and Germany about their concepts of animal dignity. Thereby, we investigated whether the very specific concept of the Swiss law is reflected in the minds of those who work with nonhuman animals on a daily basis. The results of our qualitative interviews revealed an awareness of the legal term among Swiss interviewees, but their personal concepts of animal dignity were not based on or similar to the legal definitions. The interviewed participants presented a broad range of concepts, including: similarities to human dignity, replacing concepts such as respect or integrity, and context-dependent, contingent forms of dignity. The applicability or usefulness of animal dignity was questioned by several participants; many judged it to be confusing or difficult. Therefore, we conclude by discussing animal integrity as an alternative concept that reflects the interviewees’ ideas of treating nonhuman animals in a respectful and appropriate way, and at the same time does not have the strongly metaphysical connotations of a concept such as human dignity.     

Organic farming increases richness of fungal taxa in the wheat phyllosphere

Organic farming is often advocated as an approach to mitigate biodiversity loss on agricultural land. The phyllosphere provides a habitat for diverse fungal communities that are important for plant health and productivity. However, it is still unknown how organic farming affects the diversity of phyllosphere fungi in major crops. We sampled wheat leaves from 22 organically and conventionally cultivated fields in Sweden, paired based on their geographical location and wheat cultivar. Fungal communities were described using amplicon sequencing and real‐time PCR. Species richness was higher on wheat leaves from organically managed fields, with a mean of 54 operational taxonomic units (OTUs) compared with 40 OTUs for conventionally managed fields. The main components of the fungal community were similar throughout the 350‐km‐long sampling area, and seven OTUs were present in all fields: Zymoseptoria, Dioszegia fristingensis, Cladosporium, Dioszegia hungarica, Cryptococcus, Ascochyta and Dioszegia. Fungal abundance was highly variable between fields, 10³–10⁵ internal transcribed spacer copies per ng wheat DNA, but did not differ between cropping systems. Further analyses showed that weed biomass was the strongest explanatory variable for fungal community composition and OTU richness. These findings help provide a more comprehensive understanding of the effect of organic farming on the diversity of organism groups in different habitats within the agroecosystem.     

Glutamate decarboxylase (GAD) autoantibody epitope shift during the first year of type 1 diabetes.

Autoantibodies in Type 1 diabetes patients may differentiate between glutamate decarboxylase (GAD65) cloned from human, mouse and rat with a significant better binding to the human antigen. A subgroup of 15% (27/183) patients showed significantly better binding to rodent than to human GAD65. The aim of this study was to determine whether the autoantibody specificity would remain anti-rodent during longitudinal follow-up for one year. We observed 1) that the average slope of the difference between human and mouse GAD65 autoantibodies binding increased between onset and after one year, which demonstrates reduced binding to rodent GAD65 and 2) that, in a group followed every third month, 9/11 (80%) children with rodent specific GAD65 autoantibodies at onset converted within one year to preference against human GAD65. This shift in preference was confirmed by significantly lower EC50 values in the initially anti-rodent GAD65 autoantibodies compared to samples taken one year after clinical diagnosis as determined in displacement studies with unlabeled human GAD65. We speculate that the evolution of GAD65 autoantibodies in Type 1 diabetes includes reactivity to a non-human GAD65 N-terminal end conformation. Progression towards Type 1 diabetes is, however, associated with a maturation of the immune response towards human GAD65 autoreactivity.     

Antagonism between DNA and H3K27 methylation at the imprinted Rasgrf1 locus

At the imprinted Rasgrf1 locus in mouse, a cis-acting sequence controls DNA methylation at a differentially methylated domain (DMD). While characterizing epigenetic marks over the DMD, we observed that DNA and H3K27 trimethylation are mutually exclusive, with DNA and H3K27 methylation limited to the paternal and maternal sequences, respectively. The mutual exclusion arises because one mark prevents placement of the other. We demonstrated this in five ways: using 5-azacytidine treatments and mutations at the endogenous locus that disrupt DNA methylation; using a transgenic model in which the maternal DMD inappropriately acquired DNA methylation; and by analyzing materials from cells and embryos lacking SUZ12 and YY1. SUZ12 is part of the PRC2 complex, which is needed for placing H3K27me3, and YY1 recruits PRC2 to sites of action. Results from each experimental system consistently demonstrated antagonism between H3K27me3 and DNA methylation. When DNA methylation was lost, H3K27me3 encroached into sites where it had not been before; inappropriate acquisition of DNA methylation excluded normal placement of H3K27me3, and loss of factors needed for H3K27 methylation enabled DNA methylation to appear where it had been excluded. These data reveal the previously unknown antagonism between H3K27 and DNA methylation and identify a means by which epigenetic states may change during disease and development.     

Dinoflagellate gamete formation and environmental cues: Observations, theory, and synthesis

For some species of cyst-producing dinoflagellates, the sexual life cycle is well studied in laboratory cultures. Dinoflagellate blooms in stratified waters, vertical migration of vegetative cells, and the accumulation of populations within thin layers are well-documented phenomena in nature. We propose a conceptual model that places these phenomena in a functional, ecological context: vegetative cells of a dinoflagellate population display vertical migration, but at the end of the bloom, environmental or internal cues shift the cell cycle to gamete formation. Then the vertical migrations cease, and cells accumulate in a layer at the pycnocline where gametes fuse to form zygotes, which then sink to the sediment as resting cysts. We support this conceptual model with experimental and environmental evidence.     

Impact of grazing and bioturbation of marine benthic deposit feeders on dinoflagellate cysts

The impact of benthic deposit feeders on marine dinoflagellate cysts was studied by adding a concentrated natural Swedish cyst assemblage to sediment with different deposit feeders in replicate 4-l aquaria. The deposit feeders used were the bivalve Abra nitida, the echinoderm Amphiura filiformis, and the polychaetes Melinna cristata and Nereis diversicolor. These species occur naturally near the Swedish west coast and were selected to represent different ways of feeding. The results showed a significant relative decrease of unfossilizable cyst species; whereas, the common fossilizable species Lingulodinium polyedrum significantly increased in the cyst assemblage after grazing. This work suggests that differences in dinoflagellate cyst compositions can in part be caused by different animal grazing behaviors.     

Thermal behaviour of cubic phases rich in 1-monooleoyl-rac-glycerol in the ternary system. 1-monooleoyl-rac-glycerol/n-octyl-beta-D-glucoside/water.

Using synchrotron X-ray diffraction the thermal behaviour was studied of the cubic phases in the 1-monooleoyl-rac-glycerol (MO)/n-octyl-beta-d-glucopyranoside (OG)/2H2O system with 58 or 45 wt % MO concentration and varying OG/2H2O contents. These MO contents correspond to a Pn3m cubic single-phase or a Pn3m cubic phase in excess water on the binary MO/water axis of the ternary phase diagram. The cubic liquid crystalline phases are stable with small fractions of OG, while higher OG concentrations trigger a cubic-to-lamellar phase transition. Moreover, with increasing OG concentration the initial Pn3m structure is completely converted to an Ia3d structure prior to the Lalpha phase being formed. Upon heating this effect is reversed, resulting in an Ia3d-to-Pn3m phase transition. For some samples additional peaks were observed in the diffractograms upon heating, resulting from the metastability notoriously shown by bicontinuous cubic phases. This judgement is supported by the fact that upon cooling these peaks were absent. Remarkably, both the Ia3d and the Pn3m cubic structures could be in equilibrium with excess water in this ternary system. A comparison is made with previous results on n-dodecyl-beta-d-maltoside (DM), showing that cubic phases with OG have higher thermal and compositional stability than with DM.     

High occurrence of red-listed bryophytes and lichens in mature managed forests in boreal Sweden

Successful biodiversity conservation needs to be based on reliable data regarding the distribution and abundance of species. Red Lists summarize the status of rare and declining species. Here we present the first detailed survey (10 m × 10 m resolution) of nationally red-listed bryophytes and lichens at stand level in boreal forests. 30 managed forest production stands in boreal Sweden, soon to be harvested, were surveyed in detail regarding red-listed bryophytes and lichens. On the 180 ha totally investigated, 33 red-listed species were found, representing 35% of all forest red-listed bryophytes and lichens so far recorded from this part of Sweden. The mean number of red-listed species per stand was 10 and varied between 5 and 16. Excluding three species which were so common that, given the time-limit, it was not possible to record all of their occurrences, there were on average 6 number of observations ha⁻¹. The presence and density exceed those earlier found in ‘key habitats’, defined as hot-spots for red-listed species. Almost all observations were made on trees, with 48% on living trees and 52% on dead. Altitude, area and stem volume explained 67% of the red-list species density. The results highlight the importance of unprotected areas for rare and declining species and point to a hitherto unacknowledged high biodiversity value of mature managed boreal forest stands, shaped by a less intense forestry than today's. It also raises questions regarding the use of red-listed species to identify areas of importance to biodiversity. Objective and systematic surveys of red-listed species in the forest landscape, including younger stands, are urgent.Der erfolgreiche Schutz der Biodiversität muss auf verlässlichen Daten über die Verbreitung und Abundanz der Arten basieren. Rote Listen fassen den Status seltener und abnehmender Arten zusammen. Hier präsentieren wir die erste detaillierte Erfassung (10 m × 10 m Auflösung) von Bryophyten und Flechten der nationalen Rote Liste auf Bestandsniveau in borealen Wäldern. Im borealen Schweden wurden in 30 bewirtschafteten Produktionswälder, die bald geerntet werden sollen, die Bryophyten und Flechten der Roten Liste im Detail erfasst. Auf den insgesamt untersuchten 180 ha wurden 33 Arten der Roten Liste gefunden, die 35% aller Wald-Bryophyten und-Flechten der Roten Liste repräsentieren, die bisher in diesem Teil Schwedens erfasst wurden. Die mittlere Anzahl derRote-Liste-Arten pro Bestand war 10 und variierte zwischen 5 und 16. Unter Ausschluss von drei Arten, die so gewöhnlich waren, dass es bei dem gegebenen Zeitlimit nicht möglich war alle ihre Vorkommen zu erfassen, gab es im Durchschnitt 6 Beobachtungen ha⁻¹. Vorkommen und Dichten übertrafen die früher in “Schlüsselhabitaten” gefundenen, die als ‘hot spots’ bezeichnet werden. Fast alle Beobachtungen wurden auf Bäumen gemacht, mit 48% auf lebenden und 52% auf toten Bäumen. Die Höhe, das Gebiet und das Stammvolumen erklärten 67% der Dichte der Rote-Liste-Arten. Die Ergebnisse heben die Wichtigkeit nicht-geschützter Gebiete für seltene und abnehmende Arten hervor und weisen auf einen bisher nicht wahrgenommenen hohen Biodiversitätswert von alten bewirtschafteten borealen Waldbeständen hin, die von einer weniger intensiven Forstwirtschaft als der heutigen geformt wurden. Es stellen sich ebenso Fragen, die die Verwendung der Rote-Liste-Arten betreffen, um für die Biodiversität wichtige Gebiete zu identifizieren. Objektive und systematische Erfassungen der Rote-Liste-Arten in Waldlandschaften inklusive der jüngeren Bestände sind dringend.