Satellite observations of main oceanographic processes to identify ecological associations in the Northern Arabian Sea for fishery resources exploration

Ecological associations are the inter-relationship between the species and their environment. Oceanographic processes like upwelling events and formation of eddies, rings, and fronts have been monitored using National Oceanic and Atmospheric Administration Advanced Very High Resolution (NOAA AVHRR) and Indian Remote Sensing Satellite-P4-Ocean Colour Monitor (IRS-OCM) data. Sea Surface Temperature (SST) and chlorophyll concentration (CC) images were derived from AVHRR and OCM, respectively. Upwelling event was monitored using AVHRR-SST by detecting the differences in surface water temperature. The formation of eddies, rings, cyclonic eddies, and anti-cyclonic eddies and their biological responses were studied using CC. Eddies and rings were found with high phytoplankton production in the form of bloom, which provide grazing ground for fishes. The anti-cyclonic eddies were found with very low CC, indicating the biological deserts in the ocean. The impacts of these processes on fish catch were studied using fishing operations data procured from Fishery Survey of India. In this paper, the occurrence of different oceanographic processes, their persistence, and relevance with catch statistics of fishery resources in the study area are discussed. The study explains the potentials of satellite remote sensing to establish the habitat linkage between oceanographic processes and fishery resources. Guest editor: V. D. Valavanis Essential Fish Habitat Mapping in the Mediterranean     

Rat testicular germ cell type(s) targeted by anti-spermatogenic agents in vivo and their recovery on withdrawal of treatment--a flow cytometric study

Spermatogenesis goes through very critically and precisely balanced ratios of germ cells with diverse DNA ploidies (1C, 2C and 4C). Antispermatogenic agents that reversibly interrupt spermatogenesis may have a contraceptive relevance. With a view to study the precise mechanism of action of antispermatogenic agents and identify the germ cell type(s) targeted by various agents in vivo, spermatogenic cells with diverse DNA ploidies were measured in rat testis during treatment and recovery with compounds CDRI-84/35, gossypol and estradiol, using Flow Cytometry. Rats were treated with either CDRI-84/35 (100mg/(kg day) for 15 days followed by 25mg/(kg day) for 55 days) or gossypol (20mg/(kg day) for 70 days) or estradiol benzoate (2.5microg/(rat day) for 70 days) and 3 rats from each group were sacrificed after 22, 41, 53 and 70 days of treatment to monitor the changes in population of 1C, 2C, S-phase and 4C germ cell types. Treatment with CDRI-84/35 resulted in a significant and rapid drop in 1C population with a concomitant and parallel rise in 2C population. In gossypol-treated animals 1C peak disappeared gradually and the arrest was seen predominantly at 2C stage and partially at 4C stage. At the end of the treatment most of the germ cells were arrested at 2C stage. Estradiol affected spermatogenesis differently with 1C population falling in complement to rise in both 2C and 4C peaks. Germ cells were mainly arrested at the 4C stage after the treatment. The data suggest that germ cells fail to enter meiosis in CDRI-84/35-treated rats. Few cells entering meiosis do not complete the cell division and remain arrested at 4C stage. However in case of estradiol and gossypol the meiotic 4C cells become incapable of further differentiation into haploid cells. After receiving 70 days of treatment a few rats were allowed to recover for 60, 90 and 120 days. The population of various germ cell types in the testis of recovery-group animals indicated that spermatogenesis resumes substantially in case of estradiol treatment and partially in case of treatment with the other two agents.     

N-(3-triethoxysilylpropyl)-4-(isothiocyanatomethyl)-cyclohexane-1-carboxamide (TPICC): a heterobifunctional reagent for immobilization of biomolecules on glass surface

An efficient heterobifunctional reagent, N-(3-triethoxysilylpropyl)-4-(isothiocyanatomethyl)cyclohexane-1-carboxamide (TPICC) has been developed by a simple 'two step reaction' for the preparation of bioconjugates and immobilization of biomolecules such as oligonucleotides, peptides and proteins on the glass surface. The isothiocyanate functionality at one end of the reagent, TPICC was found specific for the ligands having either aminoalkyl (RNH(2)) or mercaptoalkyl (R-SH) functionality. The synthesis of bioconjugates with the reagent was achieved through its isothiocyanate functionality at one end via the formation of stable thiourea linkage with aminoalkyl and dithiocarbamate linkage with mercaptoalkyl derivatives. The triethoxysilyl functionality of the reagent has been utilized for specific coupling with the virgin glass surface by a very simple methodology.     

Genetic structure,diversity, and allelic richness in composite collection and reference set in chickpea (<Emphasis Type="Italic">Cicer arietinum</Emphasis>L.)

Background  

Plant genetic resources (PGR) are the basic raw materials for future genetic progress and an insurance against unforeseen threats to agricultural production. An extensive characterization of PGR provides an opportunity to dissect structure, mine allelic variations, and identify diverse accessions for crop improvement. The Generation Challenge Program conceptualized the development of "composite collections" and extraction of "reference sets" from these for more efficient tapping of global crop-related genetic resources. In this study, we report the genetic structure, diversity and allelic richness in a composite collection of chickpea using SSR markers, and formation of a reference set of 300 accessions.     

Metabolic profiling by ion mobility mass spectrometry (IMMS)

Ion Mobility Mass Spectrometry (IMMS) was evaluated as an analytical method for metabolic profiling. The specific instrument used in these studies was a direct infusion (DI)-electrospray ionization (ESI)—ambient pressure ion mobility spectrometer (APIMS) coupled to a time-of-flight mass spectrometer (TOFMS). The addition of an ion mobility spectrometer to a mass spectrometer had several advantages over direct infusion electrospray mass spectrometry alone. This tandem instrument (ESI-IMMS) added a rapid separation step with high-resolution prior to mass spectrometric analysis of metabolite mixtures without extending sample preparation time or reducing the high through put potential of direct mass spectrometry. Further, IMMS also reduced the baseline noise common with ESI-MS analyses of complex samples and enabled rapid separation of isobaric metabolites. IMMS was used to analyze the metabolome of Escherichia coli (E. coli), containing a collection of extremely diverse chemical compounds including hydrophobic lipids, inorganic ions, volatile alcohols and ketones, amino and non-amino organic acids, and hydrophilic carbohydrates. IMMS data were collected as two-dimensional spectra showing both mobility and mass of each ion detected. Using direct infusion ESI-IMMS of a non-derivatized methanol extract of an E. coli culture, more than 500 features were detected, of which over 200 intracellular metabolites were tentatively assigned as E. coli metabolites. This analytical method also allowed simultaneous separation of isomeric metabolic features.     

Influence of Design Parameters on the Performance of a Surface Plasmon Sensor Based Fiber Optic Sensor

In the present work, the influence of two key design parameters, namely, fiber core diameter and sensing region length on the performance of a fiber optic surface plasmon resonance sensor, was experimentally observed. The sensor was designed with a multimode optical fiber of numerical aperture 0.40 and a thin silver layer of 50 nm thickness. The performance evaluation was carried out in terms of three performance parameters: sensitivity, signal-to-noise ratio and resolution. It was found that performance of the sensor tends to improve if fiber of large core diameter is used. Further, sensing region length should be taken as small as possible to attain highly sensitive and accurate sensing procedure. The experimental results are explained in terms of related physical background and mathematical expressions.     

Induced autotetraploidy in <Emphasis Type="Italic">Trachyspermum ammi</Emphasis> (L.) Sprague (Apiaceae)

Polyploidization is an event that developed in plants during evolutionary path which confer them better survivorship than diploids towards the harsh environmental conditions. Regarding this approach polyploids acquire most of appealing facts in it which are the special concern of biologists. Present study is an attempt to induce autotetraploids in an important medicinal plant, Trachyspermum ammi (L.) Sprague through colchicine. The seedlings of Trachyspermum ammi (L.) Sprague were treated with 3 different concentrations of colchicine (0.2, 0.4 and 0.5%, w/v) for 3 different durations. The autotetraploidy in plants have been confirmed on the basis of cytological, morphological and palynological observations. Total six autotetraploid plants (4n = 36) were induced. On the basis of the number of induced autotetraploids, 36 hours duration of 0.2% concentration of colchicine was found to be more effective. The morphological parameters such as increased flower size, reproductive organs, stomata size, pollen length and diameter, plant height, leaf length and width, number of umbel/plant, number of umbellate/umbel and stomatal frequency etc. were considered for the detection of autotetraploids. Various chromosomal configurations have been observed during meiotic analysis. Pollen fertility was decreased in autotetraploids than diploids.