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11.
Nucleotide variation at the hypervariable esterase 6 isozyme locus of Drosophila simulans 总被引:2,自引:0,他引:2
Esterase 6 (Est-6/EST6) is polymorphic in both Drosophila melanogaster and
D. simulans for two common allozyme forms, as well as for several other
less common variants. Parallel latitudinal clines in the frequencies of the
common EST6-F and EST6-S allozymes in these species have previously been
interpreted in terms of a shared amino acid polymorphism that distinguishes
the two variants and is subject to selection. Here we compare the sequences
of four D. simulans Est-6 isolates and show that overall estimates of
nucleotide heterozygosity in both coding and 5' flanking regions are more
than threefold higher than those obtained previously for this gene in D.
melanogaster. Nevertheless, the ratio of replacement to exon silent-site
polymorphism in D. simulans is less than the ratio of replacement to silent
divergence between D. simulans and D. melanogaster, which could be the
result of increased efficiency of selection against replacement
polymorphisms in D. simulans or to divergent selection between the two
species. We also find that the amino acid polymorphisms separating EST6- F
and EST6-S in D. simulans are not the same as those that separate these
allozymes in D. melanogaster, implying that the shared clines do not
reflect shared molecular targets for selection. All comparisons within and
between the two species reveal a remarkable paucity of variation in a
stretch of nearly 400 bp immediately 5' of the gene, indicative of strong
selective constraint to retain essential aspects of Est-6 promoter
function.
相似文献
12.
Manihot alterniflora and M. elongata spp. nov. (Euphorbiaceae) and the rediscovery of M. quinquefolia in Caatinga (semiarid) vegetation in Brazil 下载免费PDF全文
Márcio Lacerda Lopes Martins Paulo Cezar Lemos de Carvalho Carlos Alberto da Silva Ledo André Márcio Amorim 《Nordic Journal of Botany》2018,36(3)
We describe and illustrate two species of Manihot that occur in Caatinga (semiarid) vegetation in Brazil and redescribe and lectotypify M. quinquefolia Pohl, which was only known from a single collection made by J. E. B. Pohl in 1827. Manihot elongata P.Carvalho & M.Martins is widely distributed and Manihot alterniflora P.Carvalho & M.Martins is endangered because of its small populations and restricted area of occurrence. We establish M. quinquefolia as the only species of Manihot in the Caatinga with compound leaves. An identification key is provided for the 13 species of Manihot present in the Caatinga. 相似文献
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Nadine Correia Santos Patrício Soares Costa Liliana Amorim Pedro Silva Moreira Pedro Cunha Jorge Cotter Nuno Sousa 《PloS one》2015,10(4)
Here we focus on factor analysis from a best practices point of view, by investigating the factor structure of neuropsychological tests and using the results obtained to illustrate on choosing a reasonable solution. The sample (n=1051 individuals) was randomly divided into two groups: one for exploratory factor analysis (EFA) and principal component analysis (PCA), to investigate the number of factors underlying the neurocognitive variables; the second to test the “best fit” model via confirmatory factor analysis (CFA). For the exploratory step, three extraction (maximum likelihood, principal axis factoring and principal components) and two rotation (orthogonal and oblique) methods were used. The analysis methodology allowed exploring how different cognitive/psychological tests correlated/discriminated between dimensions, indicating that to capture latent structures in similar sample sizes and measures, with approximately normal data distribution, reflective models with oblimin rotation might prove the most adequate. 相似文献
14.
Marcelo R. de Carvalho Flávio A. Bockmann Dalton S. Amorim Carlos Roberto F. Brandão Mário de Vivo José L. de Figueiredo Heraldo A. Britski Mário C. C. de Pinna Naércio A. Menezes Fernando P. L. Marques Nelson Papavero Eliana M. Cancello Jorge V. Crisci John D. McEachran Robert C. Schelly John G. Lundberg Anthony C. Gill Ralf Britz Quentin D. Wheeler Melanie L. J. Stiassny Lynne R. Parenti Larry M. Page Ward C. Wheeler Julián Faivovich Richard P. Vari Lance Grande Chris J. Humphries Rob DeSalle Malte C. Ebach Gareth J. Nelson 《Evolutionary biology》2007,34(3-4):140-143
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Lorrany dos Santos Franco Paloma Oliveira Vidal Jaime Henrique Amorim 《Journal of biomedical science》2017,24(1):88
Background
The arboviruses Zika virus (ZIKV) and Dengue virus (DENV) have important epidemiological impact in Brazil and other tropical regions of the world. Recently, it was shown that previous humoral immunity to DENV enhances ZIKV replication in vitro, which may lead to more severe forms of the disease. Thus, traditional approaches of vaccine development aiming to control viral infection through neutralizing antibodies may induce cross-reactive enhancing antibodies. In contrast, cellular immune response was shown to be capable of controlling DENV infection independently of antibodies. The aim of the present study was to design a flavivirus NS5 protein capable of inducing a cellular immune response against DENV and ZIKV.Methods
A consensus sequence of ZIKV NS5 protein was designed among isolates from various continents. Epitopes were predicted for the most prevalent alleles of class I and II HLA in the Brazilian population. Then, this epitopes were analyzed with regard to their conservation, population coverage and distribution along the whole antigen.Results
Nineteen epitopes predicted to be more reactive (percentile rank <1) and 100% conserved among ZIKV and DENV serotypes were selected. The distribution of such epitopes along the protein was shown on a three-dimensional model and population coverage was calculated for different regions of the world. The designed protein was predicted to be stable and the distribution of selected epitopes was shown to be homogeneous along domains. The population coverage of selected epitopes was higher than 50% for most of tropical areas of the world.Conclusion
Such results indicate that the proposed antigen has the potential to induce protective cellular immune response to ZIKV and DENV in different human populations of the world.18.
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Babrzadeh F Jalili R Wang C Shokralla S Pierce S Robinson-Mosher A Nyren P Shafer RW Basso LC de Amorim HV de Oliveira AJ Davis RW Ronaghi M Gharizadeh B Stambuk BU 《Molecular genetics and genomics : MGG》2012,287(6):485-494
The Saccharomyces cerevisiae strains widely used for industrial fuel-ethanol production have been developed by selection, but their underlying beneficial genetic polymorphisms remain unknown. Here, we report the draft whole-genome sequence of the S. cerevisiae strain CAT-1, which is a dominant fuel-ethanol fermentative strain from the sugarcane industry in Brazil. Our results indicate that strain CAT-1 is a highly heterozygous diploid yeast strain, and the ~12-Mb genome of CAT-1, when compared with the reference S228c genome, contains ~36,000 homozygous and ~30,000 heterozygous single nucleotide polymorphisms, exhibiting an uneven distribution among chromosomes due to large genomic regions of loss of heterozygosity (LOH). In total, 58 % of the 6,652 predicted protein-coding genes of the CAT-1 genome constitute different alleles when compared with the genes present in the reference S288c genome. The CAT-1 genome contains a reduced number of transposable elements, as well as several gene deletions and duplications, especially at telomeric regions, some correlated with several of the physiological characteristics of this industrial fuel-ethanol strain. Phylogenetic analyses revealed that some genes were likely associated with traits important for bioethanol production. Identifying and characterizing the allelic variations controlling traits relevant to industrial fermentation should provide the basis for a forward genetics approach for developing better fermenting yeast strains. 相似文献