Selective fluorescent labeling at the α-amino group of bovine pancreatic trypsin inhibitor

Experimental investigation of protein structure and dynamics by spectroscopic methods using external probes requires attachment of a probe to a well-defined site and preparation of pure samples. Measurements of efficiency of nonradiative excitation energy transfer can yield very detailed information about the structure of proteins, provided that two different probes are selectively attached to well-defined sites. We have used specific protection of ε-amino groups using tert-butylazidoformate at high pH for covalent attachment of the fluorescent probe 2-naphthoxyacetic acid at the α-amino group of bovine pancreatic trypsin inhibitor (BPTI). The product is a chromatoraphically homogenous protein derivative that contains the probe at a dye to protein ratio of 1:1, specifically located at the N-terminus, and and that retains its full biological activity. The HPLC tryptic peptide map of BPTI has been analyzed, and all the peptide fragments have been identified. Analysis of tryptic fragments of the labled BPTI derivative showed that it was selectively labeled at the N-terminal amino acid. The probe absorbs in the 310–325-nm range, which is spectrally distinct from the absorption of the protein, and has a monoexponetial fluorescence decay. These and other charactristics make this probe a good energy donor in transfer-efficiency measurements.     

Polymyxin B is an inhibitor of insulin-induced hypoglycemia in the whole animal model. Studies on the mode of inhibitory action

The cyclic decapeptide, polymyxin B (PMXB), was found to inhibit hypoglycemia in mice receiving exogenous insulin (Amir, S., and Shechter, Y. (1985) Eur. J. Pharmacol. 110, 283-285). In this study, we have extended this observation to rats. Insulin-dependent hypoglycemia in rats is efficiently blocked at a 12:1 molar ratio of PMXB to insulin. This effect is highly specific, as it could not be mimicked by a variety of antibiotics or positively charged substances. Chemical modifications of PMXB have revealed that the ring structure, rather than the tail structure, is important for anti-insulin-like activity. Colistin A, which differs from PMXB by one conservative amino acid substitution in the ring structure, is devoid of this activity. Polymyxin B does not interact with insulin, nor does it alter the rate of insulin absorption and/or degradation, or the ability of insulin to bind to target tissues. This peptide inhibits hypoglycemia by blocking insulin-dependent activation of the hexose transport mechanism, as deduced by in vitro studies. The effect of insulin in stimulating hexose uptake (and subsequent glucose metabolism) in both isolated muscle tissue and adipocytes is blocked with little or no effect on the basal activities of these processes. Colistin A has no significant inhibiting effect. Other insulin-dependent activities, such as inhibition of lipolysis in adipocytes or synthesis of DNA in muscle cells, are not inhibited. It is concluded that PMXB inhibits, in a highly specific manner, the action of insulin in stimulating hexose transport and subsequent glucose metabolism, both in vitro and in the whole animal model.     

Disproportionation of 1,5-diphenylcarbazone. A new reaction catalysed by Photosystem I

1. 1,5-Diphenylcarbazide (DPC) was shown to compete with water as an electron donor to photosystem II in untreated chloroplasts.     

The Effect of Quercetin Nanosuspension on Prostate Cancer Cell Line LNCaP via Hedgehog Signaling Pathway

Background:Prostate cancer (PCa) is the second leading cause of cancer death in American population. In this manner, novel therapeutic approaches for identification of therapeutic targets for PCa has significant clinical implications. Quercetin is a potent cancer therapeutic agent and dietary antioxidant present in fruit and vegetables.Methods:To investigate the underlying mechanism by which the PCa was regulated, nanoparticles of quercetin were administrated to cells. For in vitro experiments, human PCa cell line LNCaP were involved. Cell viability assay and quantitative RT-PCR (qRT-PCR) for hedgehog signaling pathway genes were used to determine the key signaling pathway regulated for PCa progression.Results:The cell viability gradually decreased with increased concentration of quercetin nanoparticles. At 48 h, 40 mM concentration of quercetin treatment showed near 50% of viable cells. Quercetin nanoparticles upregulates Su(Fu) mRNA expressions and downregulates gli mRNA expressions in the LNCaP cells.Conclusion:The results showed that the hedgehog signaling targeted inhibition may have important implications of PCa therapeutics. Additionally, the outcomes provided new mechanistic basis for further examination of quercetin nanoparticles to discover potential treatment strategies and new targets for PCa inhibition.Key Words: Hedgehog, Prostate cancer, Proliferation, Quercetin nanoparticles, Signaling pathway     

Drosomycin, an Innate Immunity Peptide of Drosophila melanogaster, Interacts with the Fly Voltage-gated Sodium Channel

Several peptide families, including insect antimicrobial peptides, plant protease inhibitors, and ion channel gating modifiers, as well as blockers from scorpions, bear a common CSαβ scaffold. The high structural similarity between two peptides containing this scaffold, drosomycin and a truncated scorpion β-toxin, has prompted us to examine and compare their biological effects. Drosomycin is the most expressed antimicrobial peptide in Drosophila melanogaster immune response. A truncated scorpion β-toxin is capable of binding and inducing conformational alteration of voltage-gated sodium channels. Here, we show that both peptides (i) exhibit anti-fungal activity at micromolar concentrations; (ii) enhance allosterically at nanomolar concentration the activity of LqhαIT, a scorpion alpha toxin that modulates the inactivation of the D. melanogaster voltage-gated sodium channel (DmNa_v1); and (iii) inhibit the facilitating effect of the polyether brevetoxin-2 on DmNa_v1 activation. Thus, the short CSαβ scaffold of drosomycin and the truncated scorpion toxin can maintain more than one bioactivity, and, in light of this new observation, we suggest that the biological role of peptides bearing this scaffold should be carefully examined. As for drosomycin, we discuss the intriguing possibility that it has additional functions in the fly, as implied by its tight interaction with DmNa_v1.The cysteine-stabilized αβ scaffold, CSαβ, contains an α-helix packed against a two-stranded β-sheet stabilized by three spatially conserved disulfide bonds (reviewed in Ref. 1). The CSαβ motif appears in a number of polypeptide families that can exert various biological functions such as: short chain (30–50 residues long) and long chain (60–76 residues long) scorpion toxins that affect voltage-gated ion channels, antimicrobial peptides (of insect and plants) as well as plant protease inhibitors (see Fig. 1) (2, 3).Open in a separate windowFIGURE 1.Diversity of peptides containing the CSαβ motif. Representatives from each of five major groups of peptides containing a CSαβ motif are aligned according to their conserved disulfide bridging and common structural features: two β-strands packed against an α-helix. The featured molecules are from a diverse array of organisms. Scorpion α-toxins: {"type":"entrez-protein","attrs":{"text":"P01484","term_id":"401071","term_text":"P01484"}}P01484 (Aah2 of the North African scorpion Androctonus australis hector), {"type":"entrez-protein","attrs":{"text":"AAB30413","term_id":"546246","term_text":"AAB30413"}}AAB30413 (Ts4 of the Brazilian scorpion Tityus serrulatus); Scorpion β-toxins: {"type":"entrez-protein","attrs":{"text":"P60266","term_id":"1279695545","term_text":"P60266"}}P60266 (Css4 of the Mexican scorpion Centruroides suffusus suffusus), 1BCG_A (Bj-xtrIT of the Israeli black scorpion Hottentota judaica); Scorpion potassium channel blockers: {"type":"entrez-protein","attrs":{"text":"P13487","term_id":"38503412","term_text":"P13487"}}P13487 (charybdotoxin of the Israeli yellow scorpion Leiurus quinquestriatus hebraeus), {"type":"entrez-protein","attrs":{"text":"P0C194","term_id":"93204597","term_text":"P0C194"}}P0C194 (α-KTx 6.11 of the scorpion Opisthacanthus madagascariensis of Madagascar); Insect antimicrobial peptides: {"type":"entrez-protein","attrs":{"text":"NP_523901","term_id":"17737523","term_text":"NP_523901"}}NP_523901 (drosomycin of the fruit fly Drosophila melanogaster), 1I2U_A (heliomicin of the tobacco budworm Heliothis virescens); plant γ-thionins: 1N4N (defensin of the garden petunia Petunia hybrida), {"type":"entrez-protein","attrs":{"text":"AAL85480","term_id":"28624546","term_text":"AAL85480"}}AAL85480 (defensin of peach Prunus persica), {"type":"entrez-protein","attrs":{"text":"AAM62652","term_id":"21553559","term_text":"AAM62652"}}AAM62652 (protease inhibitor II of the thale cress Arabidopsis thaliana).Analysis of the structure-function relationships of several representatives of a subclass of the long chain scorpion toxins family, the scorpion β-toxins (activators of voltage-gated sodium channels (Na_vs)⁵), elucidated their bioactive surfaces including those of the anti-insect excitatory and depressant toxins Bj-xtrIT and LqhIT2 (from Hottentota judaica and Leiurus quinquestriatus hebraeus, respectively (4–6)) and the anti-mammalian β-toxin Css4 (from Centruroides suffusus suffusus (7)). These studies highlighted a conserved pharmacophore positioned on the CSαβ protein core (7). The C-tail, loops, turns, and unstructured stretches that connect to the CSαβ protein core in long chain scorpion toxins constitute a large portion of their exteriors and bear residues that participate in bioactivity (reviewed in Ref. 8). We have recently reported that truncated scorpion β-toxins, lacking the N- and C-terminal regions of the parental peptides but maintaining the CSαβ motif (ΔΔβ-toxins), are able to interact at high affinity with Na_vs (9). Although by themselves, the ΔΔβ-toxins (ΔΔCss4 and ΔΔBj-xtrIT) were nontoxic and did not bind at the receptor sites of the parental toxins, they exhibited an unexpected ability to allosterically facilitate the activity of a scorpion α-toxin (inhibition of Na_v fast inactivation), which binds at receptor site-3 on insect Na_vs (10), and the effect of the marine polyether toxin brevetoxin-2 (PbTx-2, facilitator of Na_v activation), which binds to receptor site-5 (11). However, a short chain potassium channel blocker (charybdotoxin) with a CSαβ structural fold did not exert any of these effects (9). These results indicated that it is not only the CSαβ motif but that specific amino acids at key sites on the protein exterior that can interact with ion channels and either block voltage-gated potassium channels or induce conformational alteration of voltage-gated sodium channels. From a structural viewpoint, the ability of ΔΔBj-xtrIT and ΔΔCss4 to bind to the Na_v, as manifested in modulation of the interaction of receptor site-3 and -5 ligands, suggests that by truncation of the two β-toxins, a masked functional surface was exposed. Because the CSαβ motif appears in several protein families including antimicrobial peptides, potassium channel blockers, and sodium channel gating modifiers (Fig. 1) (2, 3), we explored the possibility that a well characterized CSαβ peptide may exert an additional function known for other peptides bearing this scaffold.For this aim, we tested the ability of a well characterized Drosophila melanogaster anti-fungal peptide drosomycin (DRS) to interact with voltage-gated sodium channels. The solution structure of DRS indicates that this 44-amino acid peptide is cross-linked by four disulfide bonds, of which three render a CSαβ structural fold (Fig. 2) (12). Sequence comparison of the truncated scorpion β-toxin ΔΔCss4 with DRS indicates moderate identity (34%) and similarity (50%), including conservation of six cysteine residues that stabilize the CSαβ motif, which is manifested by a remarkable structural similarity (Fig. 2). Moreover, Lys-3, Asp-11, Asn-12, Glu-13, Gln-21, and Gln-22 of ΔΔCss4, which are involved in the interaction with insect Na_vs, are spatially conserved in DRS (Fig. 2) (9) but not in potassium channel blockers (Fig. 1). In light of the resemblance between the truncated scorpion β-toxin and DRS, we tested whether DRS is able to interact with the D. melanogaster voltage-gated sodium channel DmNa_v1.Open in a separate windowFIGURE 2.Sequence alignment and three-dimensional structures of ΔΔCss4 and DRS. A, schematic diagrams of the Cα model structures of ΔΔCss4 and DRS covered by semitransparent molecular surfaces. The structure of DRS (right panel) is derived from the Protein Data Bank code 1MYN. The ΔΔCss4 model (left panel) is based on the NMR structure of Cn2 (Protein Data Bank code 1Cn2) and is spatially aligned with that of DRS. A was prepared using PyMOL. B, sequences were aligned according to the conserved cysteine residues, and the disulfide bonds formed between cysteine pairs are marked in solid lines. Dashes indicate gaps. Amino acid residues that were identified as part of the interacting surface of ΔΔCss4 with insect Na_vs (9) are shown in sticks according to their chemical nature (blue, positive charge; red, negative charge; green, nonpolar) and are also highlighted in the sequence alignment. Corresponding residues in DRS according to sequence and structural alignments are also shown in sticks.     

Flow‐injection determination of vitamin A in pharmaceutical formulations using Tris(2,2′‐bipyridyl)Ru(II)–Ce(IV) chemiluminescence detection

A flow injection method with chemiluminescence detection is reported for the determination of vitamin A. The method is based on the enhancement effect of vitamin A on chemiluminescence of tris(2,2′‐bipyridyl)Ru(II)–Ce(IV) in acidic medium. The proposed procedure is used to quantitate vitamin A in the range 1.0–100 × 10^?6 mol/L with a correlation coefficient of 0.9991 (n = 9) and relative standard deviation in the range 1.2–2.3% (n = 4). The limit of detection (3 × blank) was 8.0 × 10^?8 mol/L with a sample throughput of 100/h. The effect of common excipients used in pharmaceutical formulations and some clinically important compounds was also studied. The method was applied to determine vitamin A in pharmaceutical formulations and the results obtained were in reasonable agreement with the amount quoted. The results were compared using spectrophotometric method and no significant difference was found between the results of the two methods at 95% confidence limit. Copyright © 2009 John Wiley & Sons, Ltd.     

Ecological Genetic Divergence of the Fungal Pathogen Didymella rabiei on Sympatric Wild and Domesticated Cicer spp. (Chickpea)

For millennia, chickpea (Cicer arietinum) has been grown in the Levant sympatrically with wild Cicer species. Chickpea is traditionally spring-sown, while its wild relatives germinate in the autumn and develop in the winter. It has been hypothesized that the human-directed shift of domesticated chickpea to summer production was an attempt to escape the devastating Ascochyta disease caused by Didymella rabiei. We estimated genetic divergence between D. rabiei isolates sampled from wild Cicer judaicum and domesticated C. arietinum and the potential role of temperature adaptation in this divergence. Neutral genetic markers showed strong differentiation between pathogen samples from the two hosts. Isolates from domesticated chickpea demonstrated increased adaptation to higher temperatures when grown in vitro compared with isolates from the wild host. The distribution of temperature responses among progeny from crosses of isolates from C. judaicum with isolates from C. arietinum was continuous, suggesting polygenic control of this trait. In vivo inoculations of host plants indicated that pathogenic fitness of the native isolates was higher than that of their hybrid progeny. The results indicate that there is a potential for adaptation to higher temperatures; however, the chances for formation of hybrids which are capable of parasitizing both hosts over a broad temperature range are low. We hypothesize that this pathogenic fitness cost is due to breakdown of coadapted gene complexes controlling pathogenic fitness on each host and may be responsible for maintenance of genetic differentiation between the pathogen demes.Environmental heterogeneity and genetic variability in host populations are major factors distinguishing natural from agricultural habitats. These differences exert powerful selective forces on plants and their pathogens, shaping the biology of pathosystems, epidemiological patterns, and pathogenic fitness (11, 21). Plant pathogens are dependent upon the abiotic environment as well as on their host plants and are subjected to strong selective forces exerted by their hosts. This process is shaped especially (but not exclusively) by genetic variation at loci controlling differential host specificity, which may ultimately be an important driver in speciation (37, 48, 49).The Neolithic revolution and the adoption of farming have had a large impact on plant communities as well as their related pathogens (11, 34, 57). The long-term interplay between plant pathogens and their hosts and the resulting evolutionary trajectories may have different patterns in natural plant communities as compared to agro-ecosystems (12). One striking observation is that pathogens of natural plant populations, although prevalent, rarely cause the destruction of their hosts (21). Therefore, investigations of the epidemiological and biological differences between pathogen populations from wild and domesticated origins are of fundamental interest and are highly relevant to understanding disease patterns, parasite evolution, and host resistance in agricultural systems. Such studies are expected to be especially fruitful in the centers of origin of crop species, because these regions are generally considered to be pathogen centers of origin as well (40, 57).Throughout West Asia, wild cereals and legumes and their domesticated derivatives have been growing sympatrically since the beginning of Near Eastern farming systems (41, 61). Domesticated chickpea, Cicer arietinum L, is grown sympatrically with a number of annual and perennial Cicer relatives, including the immediate wild progenitor of domesticated chickpea, C. reticulatum Ladiz (39, 58). Following the Neolithic agricultural revolution in southeastern Turkey (41), the Near Eastern crop package spread in all directions throughout the east Mediterranean and reached the southern Levant within 1 millennium (2, 3). This “passage” of the cultigens, from their core region in southeast Turkey into the southern Levant, traversed populations of many of their wild progenitors and more distantly related wild relatives (e.g., wild barley, wild emmer wheat, wild bitter vetch, wild lentils, and wild peas), (2, 3). Presumably, these natural populations were infested by pathogens capable of infecting the domesticated forms (2, 20, 24).Domesticated chickpea differs from the Near Eastern founder crops in its seasonal growth pattern. While most founder crops have retained the autumnal germination/spring maturation cycle like their wild relatives, domesticated chickpea is a spring-sown crop, germinating and developing up to 4 months later than its wild relatives (1, 3). This shift of life cycle is puzzling since water availability in the Levant is a major yield-limiting factor and autumn-sown crops enjoy a substantial yield benefit. It has been recently hypothesized that this shift was driven by the extreme vulnerability of chickpea to Ascochyta blight during the rainy season and was the only means to secure stable yields in ancient times (3). Didymella rabiei (Kovachevski) var. Arx. (Anamorph: Ascochyta rabiei (Pass) Labr.) is one of the most destructive diseases of domesticated chickpea, affecting all above-ground parts of the plant. Secondary spread of D. rabiei conidia occurs through rain splash, and epidemic intensity is governed by rain frequency and quantity. As Ascochyta blight epidemics proceed, foci of diseased plants become visible. Unlike other Ascochyta diseases of legumes and Septoria diseases of cereals, Ascochyta blight of chickpea may cause total yield loss under the appropriate environmental conditions (43). Autumn-sown chickpea is severely affected by Ascochyta blight because the crop growth period coincides with the rainy season and optimum environmental conditions for pathogen development and spread (3, 56).Unlike the often massive stands of wild cereals, C. reticulatum has a very narrow and fragmented distribution (2, 8, 38). However, other wild annual Cicer taxa are more common across the region and can be found in close proximity to the domesticated crop (1, 8). In the southern Levant, domesticated chickpea is grown sympatrically, often just few meters apart from C. judaicum (27). C. judaicum grows in patchy distributions in stony/rocky habitats in Israel and neighboring territories, mostly in sites with annual precipitation of >480 mm and altitude of <900 m (6). Unlike C. judaicum, modern chickpea cropping in Israel spans large tracts of land employing a 5-year rotation in individual fields. Recently, D. rabiei isolates sampled from C. judaicum and isolates sampled from C. arietinum were studied and found to be better adapted to their respective original host than to the other Cicer species (26, 27). In addition, in vitro hyphal growth rate experiments exposed an adaptation to higher temperatures among isolates originating from C. arietinum compared to isolates from C. judaicum (26). Given that the natural growing season of C. judaicum occurs during the Levantine winter and that chickpea is a traditional spring-sown crop in the region, it is likely that the apparent adaptation to higher temperatures of D. rabiei isolates from domesticated chickpea may represent an ecological shift following the introduction of summer cropping practices in the Near East (3). These sympatric wild and domesticated pathosystems of Cicer/Ascochyta represent a unique opportunity for studying the genetic basis of the pathogen''s ecological adaptation and its association with pathogenic fitness. Such a system may also help to determine the role of ecological factors and pathogenic fitness in pathogenic divergence and the evolutionary relationships among pathogen populations in natural and human-directed agro-ecosystems (57).In this context, our underlying hypotheses were as follows: (i) isolates sampled from C. arietinum and C. judaicum are conspecific but represent genetically distinct populations; (ii) the temperature growth response of D. rabiei isolates from C. judaicum and C. arietinum has a heritable genetic basis; (iii) the temperature growth response plays an important role in the ongoing pathogen divergence process and, therefore, it is expected to have high heritability values; and (iv) the existence of two sympatric D. rabiei populations (demes) requires the action of one or more genetic isolation mechanisms. In accord with the above hypotheses, the aims of this study were (i) to assess the genetic differentiation between D. rabiei isolates originating from C. judaicum versus C. arietinum, (ii) to determine the genetic basis of temperature response and estimate its heritability, and (iii) to assess the relationship between temperature adaptation and pathogenic fitness among progeny from crosses between D. rabiei isolates from C. judaicum and C. arietinum on the two original hosts.     

Vaccination with autologous dendritic cells pulsed with multiple tumor antigens for treatment of patients with malignant melanoma: results from a phase I/II trial

Background aimsDendritic cells are regarded as the most effective antigen presenting cells and coordinators of the immune response and therefore suitable as vaccine basis. Here we present results from a clinical study in which patients with malignant melanoma (MM) with verified progressive disease received vaccination with autologous monocyte-derived mature dendritic cells (DC) pulsed with p53, survivin and telomerase-derived peptides (HLA-A2⁺ patients) or with autologous/allogeneic tumor lysate (HLA-A2^? patients) in combination with low-dose interleukin (IL)-2 and interferon (IFN)-α2b.ResultsOf 46 patients who initiated treatment, 10 stopped treatment within 1–4 weeks because of rapid disease progression and deterioration. After 8 weeks, 36 patients were evaluable: no patient had an objective response, 11 patients had stable disease (SD); six had continued SD after 4 months, and three patients had prolonged SD for more than 6 months. The mean overall survival time was 9 months, with a significantly longer survival (18.4 months) of patients who attained SD compared with patients with progressive disease (PD) (5 months). Induction of antigen-specific T-cell responses was analyzed by multidimensional encoding of T cells using HLA-A2 major histocompatibility complex (MHC) multimers. Immune responses against five high-affinity vaccine peptides were detectable in the peripheral blood of six out of 10 analyzed HLA-A2⁺ patients. There was no observed correlation between the induction of immune responses and disease stabilization. A significant lower blood level of regulatory T cells (CD25^high CD4 T cells) was demonstrable after six vaccinations in patients with SD compared with PD.ConclusionsVaccination was feasible and safe. Treatment-associated SD was observed in 24% of the patients. SD correlated with prolonged survival suggesting a clinical benefit. Differences in the level of regulatory T cells among SD and PD patients could indicate a significant role of these immune suppressive cells.     

Antimicrobial properties of highly fluorinated silver(I) tris(pyrazolyl)borates

Highly fluorinated tris(pyrazolyl)borate ligand [HB(3,5-(CF3)2Pz)3]- has been used in the isolation of air- and light-stable silver complex, [HB(3,5-(CF3)2Pz)3]Ag(OSMe2). It is a monomeric tetrahedral silver complex with an O-bonded dimethylsulfoxide ligand. The silver adduct [HB(3,5-(CF3)2Pz)3]Ag(OSMe2) and the related [HB(3,5-(CF3)2Pz)3] Ag(THF) (where OSMe2 = dimethyl sulfoxide; THF = tetrahydrofuran) show good antibacterial activity, and their antimicrobial efficacy against Staphylococcus aureus is greater than those of AgNO3 and silver sulfadiazine.     

Identification of early intermediates of caspase activation using selective inhibitors and activity-based probes

Caspases are cysteine proteases that are key effectors in apoptotic cell death. Currently, there is a lack of tools that can be used to monitor the regulation of specific caspases in the context of distinct apoptotic programs. We describe the development of highly selective inhibitors and active site probes and their applications to directly monitor executioner (caspase-3 and -7) and initiator (caspase-8 and -9) caspase activity. Specifically, these reagents were used to dissect the kinetics of caspase activation upon stimulation of apoptosis in cell-free extracts and intact cells. These studies identified a full-length caspase-7 intermediate that becomes catalytically activated early in the pathway and whose further processing is mediated by mature executioner caspases rather than initiator caspases. This form also shows distinct inhibitor sensitivity compared to processed caspase-7. Our data suggest that caspase-7 activation proceeds through a previously uncharacterized intermediate that is formed without cleavage of the intact zymogen.