Plasma oxysterols and angiographically determined coronary atherosclerosis: a case control study

Several in vitro and in vivo experiments have implicated oxysterols in the aetiology and progression of atherosclerosis. Oxysterols may be formed endogenously by oxidation of cholesterol and thus may form a marker of LDL oxidation. They may also be obtained exogenously through dietary intake. We investigated the association of oxysterols with the degree of coronary stenosis in patients undergoing coronary angiography. Cases with severe coronary atherosclerosis 80 stenosis in one of the major coronary vessels, n =80 were compared with controls with no or minor stenosis 50 stenosis in all three major coronary vessels, n =79 . Cases and controls were prestratified on age, gender and smoking habits. Evaluated were plasma levels of unesterified 7 hydroxycholesterol, 7 hydroxycholesterol, 25 hydroxycholesterol, 7 ketocholesterol, cholestane triol and 5,6 epoxycholestanol. 7 Hydroxycholesterol made up 67 of the total amount of plasma oxysterol concentration and was the only one significantly higher in cases 1.53 mu g per 100 ml vs 1.27 mu g per 100 ml, p 0.05 . Further, cases had somewhat higher LDL cholesterol levels and significantly lower HDL cholesterol levels than controls. After multivariate adjustment to account for this difference in lipid levels and for the prestratification factors the mean difference between cases and controls for 7 hydroxycholesterol 0.14 mu g per 100 ml was no longer significant. Also the other oxysterols showed no significant association with the degree of coronary stenosis. Multiple logistic regression analyses showed an adjusted odds ratio of 1.07 95 CI, 0.45-2.59 in the highest tertile of total plasma oxysterol level. We conclude, that this study does not support the hypothesis that plasma oxysterols form an additional risk factor for coronary atherosclerosis.     

Glutamine Metabolism Is Essential for Human Cytomegalovirus Infection

Human fibroblasts infected with human cytomegalovirus (HCMV) were more viable than uninfected cells during glucose starvation, suggesting that an alternate carbon source was used. We have determined that infected cells require glutamine for ATP production, whereas uninfected cells do not. This suggested that during infection, glutamine is used to fill the tricarboxylic acid (TCA) cycle (anaplerosis). In agreement with this, levels of glutamine uptake and ammonia production increased in infected cells, as did the activities of glutaminase and glutamate dehydrogenase, the enzymes needed to convert glutamine to α-ketoglutarate to enter the TCA cycle. Infected cells starved for glutamine beginning 24 h postinfection failed to produce infectious virions. Both ATP and viral production could be rescued in glutamine-starved cells by the TCA intermediates α-ketoglutarate, oxaloacetate, and pyruvate, confirming that in infected cells, a program allowing glutamine to be used anaplerotically is induced. Thus, HCMV infection activates the mechanisms needed to switch the anaplerotic substrate from glucose to glutamine to accommodate the biosynthetic and energetic needs of the viral infection and to allow glucose to be used biosynthetically.Glucose (Glc) and glutamine are the two most abundant nutrients used by mammalian cells. They are necessary for the generation of energy, macromolecules, and second messengers (1, 5-7, 9-12, 16). Glucose has long been considered absolutely essential for the viability of mammalian cells because of its contribution to energy homeostasis through glycolysis and the tricarboxylic acid (TCA) cycle (Fig. ​(Fig.1).1). Recent studies demonstrated that human diploid fibroblasts are killed by glucose deprivation by a mechanism different from apoptosis (20).Open in a separate windowFIG. 1.Glycolysis and the citric acid cycle showing glucose and glutamine utilization. The aspects of the cytoplasmic (Cyto) and mitochondrial (Mito) metabolism of glucose and glutamine discussed in the text are outlined. Dashed lines indicate that there are several intermediates formed (several reactions) between the ones shown. PEPCK, phosphoenolpyruvate carboxykinase; ME: malic enzyme; GDH, glutamate dehydrogenase; GLS, glutaminase; ACL, ATP citrate lyase; OAA, oxaloacetic acid; AcCoA, acetyl coenzyme A.In 1924, Warburg observed that cancer cells metabolize glucose very differently than normal cells (18). Cancer cells converted glucose into lactate even in the presence of sufficient oxygen to support mitochondrial oxidative phosphorylation (Fig. ​(Fig.1).1). This utilization of glucose, called the Warburg effect, results in only 2 ATP molecules produced per molecule of glucose, whereas if it had proceeded through the TCA cycle and mitochondrial oxidative phosphorylation, an additional 36 ATP molecules would have been produced per molecule of glucose. Recently reported data provide an explanation for what appeared to be an inefficient utilization of glucose (7, 8, 19). In cancer cells, exogenous glutamine is used as a carbon source, which facilitates the cell''s ability to use glucose biosynthetically instead of breaking it down completely for energy. This is accomplished by glutamine being converted to α-ketoglutarate via glutaminase (GLS) and glutamate dehydrogenase (GDH) (Fig. ​(Fig.1).1). This process of replenishing TCA cycle intermediates is called anaplerosis. Thus, glutamine anaplerotically fills the TCA cycle (Fig. ​(Fig.1),1), providing NADH for oxidative phosphorylation as well as TCA cycle intermediates, which serve as important biosynthetic precursors (7, 8). In contrast, normal cells are believed to use only a small amount of consumed glutamine for macromolecular biosynthesis and energy; thus, glucose and glutamine metabolism are dramatically altered in tumor cells (8, 16).While glutamine starvation in many cell types has little impact on cell viability, it has been shown to induce cell death in cancer cell lines that overexpress the oncogene c-myc (20). These cells also showed decreased levels of ATP production correlating with decreased concentrations of TCA cycle intermediates; both are predictable consequences of glutamine starvation if glutamine is being used anaplerotically. In agreement with this finding, the effects of glutamine starvation could be reversed by the addition of the TCA cycle intermediates pyruvate (Pyr) and oxaloacetate (OAA) (Fig. ​(Fig.11).Human cytomegalovirus (HCMV) is a slow-growing betaherpesvirus that exerts a large energetic and biosynthetic demand on cells to ensure successful viral replication. Recent mass spectrometry-based metabolic flux studies indicated global metabolic upregulation in infected cells (14, 15). This included greatly increased glycolysis in which the vast majority of glucose-derived acetyl coenzyme A (AcCoA) went to support fatty acid synthesis (Fig. ​(Fig.1)1) to make membranes needed by the virus. Thus, there is a great decrease in the amount of glucose-derived carbon entering the TCA cycle. In other words, the virus induces a modified Warburg effect so that glucose-derived carbon can be used biosynthetically. These metabolomic data also suggest that glutamine may be used to anaplerotically fill the TCA cycle.We have investigated the impact of glucose and glutamine on HCMV replication. We have found that under conditions of glucose deprivation, infected cells are more viable than mock-infected cells. Thus, we hypothesized that the infected cells use glutamine anaplerotically. In agreement with this prediction, glutamine was found to be necessary for ATP production in infected cells but not in uninfected cells. Furthermore, cells starved of glutamine beginning 24 h postinfection (hpi) failed to produce infectious virions. HCMV-induced glutaminolysis was indicated by increased glutamine uptake and ammonia production corresponding to increased activities of glutaminase and glutamate dehydrogenase. These enzymes convert glutamine to α-ketoglutarate (α-KG) for anaplerotic use in the TCA cycle. The anaplerotic use of glutamine in the TCA cycle was also demonstrated by the finding that both ATP production and viral growth could be rescued by replacing glutamine with the TCA cycle intermediate α-ketoglutarate, oxaloacetate, or pyruvate. Thus, our data suggest that in HCMV-infected cells, as in many tumor cells, a program is activated whereby glutamine utilization increases specifically to maintain the TCA cycle, allowing glucose to be used biosynthetically.     

Structure-activity relationship studies of 3-dodecanoylindole-2-carboxylic acid inhibitors of cytosolic phospholipase A2alpha-mediated arachidonic acid release in intact platelets: variation of the keto moiety

Recently we found that 1-methyldodecanoylindole-2-carboxylic acid (1) and 1-[2-(4-carboxyphenoxy)ethyl]-3-dodecanoylindole-2-carboxylic acid (4) were inhibitors of the cytosolic phospholipase A2alpha (cPLA2alpha)-mediated arachidonic acid release in calcium ionophore A23187-stimulated human platelets with IC50-values of 4.8 microM (1) and 0.86 microM (4). We have now replaced the 3-acyl residue of these compounds by alkylated sulfinyl-, sulfony-, sulfinamoyl-, sulfamoyl-, carbonylamino-, or carbonylaminomethyl-substituents. Structure-activity relationship studies revealed that the pronounced cellular activity of 4 strongly depends on the presence of the 3-acyl moiety. Surprisingly, when testing 4 and its derivatives in an assay with the isolated cPLA2, none of these compounds showed an inhibitory potency at 10 microM indicating that they do not inhibit cPLA2alpha in the cells by a direct interaction with the active site of the enzyme.     

Characterization of specific protein-RNA complexes associated with the coupling of polyadenylation and last-intron removal

Polyadenylation and splicing are highly coordinated on substrate RNAs capable of coupled polyadenylation and splicing. Individual elements of both splicing and polyadenylation signals are required for the in vitro coupling of the processing reactions. In order to understand more about the coupling mechanism, we examined specific protein-RNA complexes formed on RNA substrates, which undergo coupled splicing and polyadenylation. We hypothesized that formation of a coupling complex would be adversely affected by mutations of either splicing or polyadenylation elements known to be required for coupling. We defined three specific complexes (A(C)', A(C), and B(C)) that form rapidly on a coupled splicing and polyadenylation substrate, well before the appearance of spliced and/or polyadenylated products. The A(C)' complex is formed by 30 s after mixing, the A(C) complex is formed between 1 and 2 min after mixing, and the B(C) complex is formed by 2 to 3 min after mixing. A(C)' is a precursor of A(C), and the A(C)' and/or A(C) complex is a precursor of B(C). Of the three complexes, B(C) appears to be a true coupling complex in that its formation was consistently diminished by mutations or experimental conditions known to disrupt coupling. The characteristics of the A(C)' complex suggest that it is analogous to the spliceosomal A complex, which forms on splicing-only substrates. Formation of the A(C)' complex is dependent on the polypyrimidine tract. The transition from A(C)' to A(C) appears to require an intact 3'-splice site. Formation of the B(C) complex requires both splicing elements and the polyadenylation signal. A unique polyadenylation-specific complex formed rapidly on substrates containing only the polyadenylation signal. This complex, like the A(C)' complex, formed very transiently on the coupled splicing and polyadenylation substrate; we suggest that these two complexes coordinate, resulting in the B(C) complex. We also suggest a model in which the coupling mechanism may act as a dominant checkpoint in which aberrant definition of one exon overrides the normal processing at surrounding wild-type sites.     

Secondary structure as a functional feature in the downstream region of mammalian polyadenylation signals

Secondary structure within the downstream region of mammalian polyadenylation signals has been proposed to perform important functions. The simian virus 40 late polyadenylation signal (SVLPA) forms alternate secondary structures in equilibrium. Their formation correlates with cleavage-polyadenylation efficiency (H. Hans and J. C. Alwine, Mol. Cell. Biol. 20:2926-2932, 2000; M. I. Zarudnaya, I. M. Kolomiets, A. L. Potyahaylo, and D. M. Hovorun, Nucleic Acids Res. 3:1375-1386, 2003), and oligonucleotides that disrupt the secondary structure inhibit in vitro cleavage. To define the important features of downstream secondary structure, we first minimized the SVLPA by deletion, forming a downstream region with fewer, and more stable, stem-loop structures. Specific mutagenesis showed that both stem stability and loop size are important functional features of the downstream region. Stabilization of the stem, thus minimizing alternative structures, decreased cleavage efficiency both in vitro and in vivo. This was most deleterious when the stem was stabilized at the base of the loop, constraining loop size by inhibiting breathing of the stem. The significance of loop size was supported by mutants that showed increased cleavage efficiency with increased loop size and vice versa. A loop of at least 12 nucleotides promoted cleavage; U richness in the loop also promoted cleavage and was particularly important when the stem was stabilized. A mutation designed to eliminate downstream secondary structure still formed many relatively weak alternative structures in equilibrium and retained function. The data suggest that although the downstream region is very important, its structure is quite malleable and is able to tolerate significant mutation within a wide range of primary and secondary structural features. We propose that this malleability is due to the enhanced ability of GU- and U-rich downstream elements to easily form secondary structures with surrounding sequences.     

Functionally significant secondary structure of the simian virus 40 late polyadenylation signal

The structure of the highly efficient simian virus 40 late polyadenylation signal (LPA signal) is more complex than those of most known mammalian polyadenylation signals. It contains efficiency elements both upstream and downstream of the AAUAAA region, and the downstream region contains three defined elements (two U-rich elements and one G-rich element) instead of the single U- or GU-rich element found in most polyadenylation signals. Since many reports have indicated that the secondary structure in RNA may play a significant role in RNA processing, we have used nuclease structure analysis techniques to determine the secondary structure of the LPA signal. We find that the LPA signal has a functionally significant secondary structure. Much of the region upstream of AAUAAA is sensitive to single-strand-specific nucleases. The region downstream of AAUAAA has both double- and single-stranded characteristics. Both U-rich elements are predominately sensitive to the double-strand-specific nuclease RNase V(1), while the G-rich element is primarily single stranded. The U-rich element closest to AAUAAA contains four distinct RNase V(1)-sensitive regions, which we have designated structural region 1 (SR1), SR2, SR3, and SR4. Linker scanning mutants in the downstream region were analyzed both for structure and for function by in vitro cleavage analyses. These data show that the ability of the downstream region, particularly SR3, to form double-stranded structures correlates with efficient in vitro cleavage. We discuss the possibility that secondary structure downstream of the AAUAAA may be important for the functions of polyadenylation signals in general.     

Arginase 2 Suppresses Renal Carcinoma Progression via Biosynthetic Cofactor Pyridoxal Phosphate Depletion and Increased Polyamine Toxicity

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