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von der Lieth CW Freire AA Blank D Campbell MP Ceroni A Damerell DR Dell A Dwek RA Ernst B Fogh R Frank M Geyer H Geyer R Harrison MJ Henrick K Herget S Hull WE Ionides J Joshi HJ Kamerling JP Leeflang BR Lütteke T Lundborg M Maass K Merry A Ranzinger R Rosen J Royle L Rudd PM Schloissnig S Stenutz R Vranken WF Widmalm G Haslam SM 《Glycobiology》2011,21(4):493-502
The EUROCarbDB project is a design study for a technical framework, which provides sophisticated, freely accessible, open-source informatics tools and databases to support glycobiology and glycomic research. EUROCarbDB is a relational database containing glycan structures, their biological context and, when available, primary and interpreted analytical data from high-performance liquid chromatography, mass spectrometry and nuclear magnetic resonance experiments. Database content can be accessed via a web-based user interface. The database is complemented by a suite of glycoinformatics tools, specifically designed to assist the elucidation and submission of glycan structure and experimental data when used in conjunction with contemporary carbohydrate research workflows. All software tools and source code are licensed under the terms of the Lesser General Public License, and publicly contributed structures and data are freely accessible. The public test version of the web interface to the EUROCarbDB can be found at http://www.ebi.ac.uk/eurocarb. 相似文献
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Bello C Dal Bello G Cea M Nahimana A Aubry D Garuti A Motta G Moran E Fruscione F Pronzato P Grossi F Patrone F Ballestrero A Dupuis M Sordat B Zimmermann K Loretan J Wartmann M Duchosal MA Nencioni A Vogel P 《Bioorganic & medicinal chemistry》2011,19(24):7720-7727
New derivatives of 1,4-dideoxy-1,4-imino-d-ribitol have been prepared and evaluated for their cytotoxicity on solid and haematological malignancies. 1,4-Dideoxy-5-O-[(9Z)-octadec-9-en-1-yl]-1,4-imino-d-ribitol (13, IC50 ∼2 μM) and its C18-analogues (IC50 <10 μM) are cytotoxic toward SKBR3 (breast cancer) cells. 13 also inhibits (IC50 ∼8 μM) growth of JURKAT cells. 相似文献
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Durdagi S Şentürk M Ekinci D Balaydın HT Göksu S Küfrevioğlu Öİ Innocenti A Scozzafava A Supuran CT 《Bioorganic & medicinal chemistry》2011,19(4):1381-1389
Carbonic anhydrases (CAs, EC 4.2.1.1) are inhibited by sulfonamides, inorganic anions, phenols, coumarins (acting as prodrugs) and polyamines. A novel class of CA inhibitors (CAIs), interacting with the CA isozymes I, II (cytosolic) and IX, XII (transmembrane, tumor-associated) in a different manner, is reported here. Kinetic measurements allowed us to identify hydroxy-/methoxy-substituted benzoic acids as well as di-/tri-methoxy benzenes as submicromolar-low micromolar inhibitors of the four CA isozymes. Molecular docking studies of a set of such inhibitors within CA I and II allowed us to understand the inhibition mechanism. This new class of inhibitors binds differently compared to all other classes of inhibitors known to date: they were found between the phenol-binding site and the coumarin-binding site, filling thus the middle of the enzyme cavity. They exploit different interactions with amino acid residues and water molecules from the CA active site compared to other classes of inhibitors, offering the possibility to design CAIs with an interesting inhibition profile compared to the clinically used sulfonamides/sulfamates. 相似文献
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B. Zappacosta G.E. Martorana S. Papini J. Gervasoni F. Iavarone S. Fasanella B. Giardina P. De Sole S. Persichilli 《Luminescence》2011,26(5):331-335
Cigarette smoking plays an important role as a cause of morbidity and mortality in humans, involving respiratory, cardiovascular, digestive and reproductive systems. Tobacco smoke contains a large number of molecules, some of which are proven carcinogens. Although not fully understood, polymorphonuclear leukocytes seem to play a crucial role in the mechanisms by which tobacco smoke compounds are implicated in smoke‐related diseases. In this paper the effects of an aqueous cigarette smoke extract on the expression of adhesion molecules of polymorphonuclear leukocytes together with the changes in the cell morphology have been related to the chemiluminescence activity. The results obtained show that polymorphonuclear leukocytes treated with aqueous cigarette smoke extract are significantly impaired, as suggested by the changes of chemiluminescence activity, of membrane receptors (CD18, CD62), myeloperoxidase expression and of cell morphology. Altogether the present data indicate that treated polymorphonuclear leukocytes are ineffectively activated and therefore unable to phagocytize zymosan particles. Copyright © 2010 John Wiley & Sons, Ltd. 相似文献
107.
Fabio Rizzolo Chiara Testa Duccio Lambardi Michael Chorev Mario Chelli Paolo Rovero Anna Maria Papini 《Journal of peptide science》2011,17(10):708-714
Attracted by the possibility to optimize time and yield of the synthesis of difficult peptide sequences by MW irradiation, we compared Fmoc/tBu MW‐assisted SPPS of 1–34 N‐terminal fragment of parathyroid hormone‐related peptide (PTHrP) with its conventional SPPS carried out at RT. MWs were applied in both coupling and deprotection steps of SPPS protocol. During the stepwise elongation of the resin‐bound peptide, monitoring was conducted by performing MW‐assisted mini‐cleavages and analyzing them by UPLC‐ESI‐MS. Identification of some deletion sequences was helpful to recognize critical couplings and as such helped to guide the introduction of MW irradiations to these stages. Copyright © 2011 European Peptide Society and John Wiley & Sons, Ltd. 相似文献
108.
Gambarino S Costa C Astegiano S Piasentin EA Segoloni GP Cavallo R Bergallo M 《Molecular biotechnology》2011,49(2):151-158
Polyomavirus BK latently persist in different sites, including the renourinary tract, and may reactivate causing nephropathy
in renal transplant recipients or hemorrhagic cystitis in bone marrow recipients. Based on the sequence of the VP1 gene, four
genotypes have been described, corresponding to the four serologically differentiated subtypes I–IV, with different prevalence
and geographic distribution. In this study, the development and clinical validation of four different Real-Time PCR assays
for the detection and discrimination of BKV genotypes as a substitute of DNA sequencing are described. 379 BK VP1 sequences,
belonging to the main four genotypes, were aligned and “hot spots” of mutation specific for all the strains or isolates were
identified. Specific primers and probes for the detection and discrimination of each genotype by four Real-Time PCR assays
were designed and technically validated. Subsequently, the four Real-Time PCR assays were used to test 20 BK-positive urine
specimens from renal transplant patients, and evidenced a prevalence of BK genotype I, as previously reported in Europe. Results
were confirmed by sequencing. The availability of a rapid and simple genotyping method could be useful for the evaluation
of BK genotypes prevalence and studies on the impact of the infecting genotype on viral biological behavior, pathogenic role,
and immune evasion strategies. 相似文献
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