Nanoparticles from culture media are internalized by in vitro-produced bovine embryos and its depletion affect expression of pluripotency genes

Extracellular vesicles are nanoparticles secreted by cell and have been proposed as suitable markers to identify competent embryos produced in vitro. Characterizing EVs secreted by individual embryos is challenging because culture medium itself contributes to the pool of nanoparticles that are co-isolated. To avoid this, culture medium must be depleted of nanoparticles that are present in natural protein source. The aim of this study was to evaluate if the culture medium subjected to nanoparticle depletion can support the proper in vitro development of bovine embryos. Zygotes were cultured in groups on depleted or control medium for 8 days. Nanoparticles from the medium were characterized by their morphology, size and expression of EVs surface markers. Isolated nanoparticles were labelled and added to depleted medium containing embryos at different developmental stages and evaluated after 24 hours at 2, 8-16 cells, morula and blastocyst stages. There were no statistical differences on blastocyst rate at day 7 and 8, total cell count neither blastocyst diameter between groups. However, morphological quality was better in blastocysts cultured in non-depleted medium and the expression of SOX2 was significantly lower whereas NANOG expression was significantly higher. Few nanoparticles from medium had a typical morphology of EVs but were positive to specific surface markers. Punctuated green fluorescence near the nuclei of embryonic cells was observed in embryos from all developmental stages. In summary, nanoparticles from culture medium are internalized by in vitro cultured bovine embryos and their depletion affects the capacity of medium to support the proper embryo development.     

Ten simple rules for making a vocabulary FAIR

We present ten simple rules that support converting a legacy vocabulary—a list of terms available in a print-based glossary or in a table not accessible using web standards—into a FAIR vocabulary. Various pathways may be followed to publish the FAIR vocabulary, but we emphasise particularly the goal of providing a globally unique resolvable identifier for each term or concept. A standard representation of the concept should be returned when the individual web identifier is resolved, using SKOS or OWL serialised in an RDF-based representation for machine-interchange and in a web-page for human consumption. Guidelines for vocabulary and term metadata are provided, as well as development and maintenance considerations. The rules are arranged as a stepwise recipe for creating a FAIR vocabulary based on the legacy vocabulary. By following these rules you can achieve the outcome of converting a legacy vocabulary into a standalone FAIR vocabulary, which can be used for unambiguous data annotation. In turn, this increases data interoperability and enables data integration.     

Role of biochemical markers in the monitoring of COVID-19 patients

COVID-19 is an infectious disease caused by the SARSCoV-2 virus, which has given rise to a global sanitary emergency. The clinical characteristics of COVID-19 are varied and can range from an asymptomatic infection to a mild to severe pneumonia. Recent studies have shown that different laboratory parameters become altered in these patients, and as such are useful as biomarkers to assess the progression of the disease and categorize patients that may present a severe and/or fatal clinical condition. This review analyzes biochemical and immunological markers that become altered in COVID-19 patients and their impact on different organs at a hepatic, cardiac, renal and pancreatic level, as well as markers of inflammation, analyzing their implications in the evolution of the disease.     

TWO‐DIMENSIONAL GEL ELECTROPHORESIS ANALYSIS OF BROWN ALGAL PROTEIN EXTRACTS1

High‐quality protein extracts are required for proteomic studies, a field that is poorly developed for marine macroalgae. A reliable phenol extraction protocol using Scytosiphon gracilis Kogame and Ectocarpus siliculosus (Dillwyn) Lyngb. (Phaeophyceae) as algal models resulted in high‐quality protein extracts. The performance of the new protocol was tested against four methods available for vascular plants and a seaweed. The protocol, which includes an initial step to remove salts from the algal tissues, allowed the use of highly resolving two‐dimensional gel electrophoresis (2‐DE) protein analyses, providing the opportunity to unravel potentially novel physiological processes unique to this group of marine organisms.     

The Social Behavior of Brown Spider Monkeys (Ateles hybridus) in a Fragmented Forest in Colombia

Forest fragmentation and habitat loss are two of the main drivers of wildlife population declines. Animals exposed to habitat disturbances must develop behavioral strategies to adapt to novel, rapidly fluctuating socioecological challenges. Understanding the behavioral flexibility of endangered primates as a response to ecological challenges, e.g., anthropogenic habitat disturbance, is a key element in the design of successful conservation initiatives for remaining populations. We studied the social behavior of a group of 11 adult and subadult brown spider monkeys (Ateles hybridus) living in a recently isolated and densely populated forest fragment in the Magdalena River Valley, Colombia, and compared their behavior to that of other wild spider monkey populations. From June 2009 to July 2010 we assessed diet, activity budgets, and the rates of affiliative and agonistic interactions initiated and received by adult male and female spider monkeys. The diet of our focal group was quite different from that in most previous studies of Ateles: leaves accounted for ca. 40?% of their diet, and fruits represented barely half of their diet, suggesting that this population has had to adjust its feeding strategies to the local ecological challenges. We found no sex differences in the time males and females spent resting, moving, and socializing, but females tended to invest more time in feeding than males did. Male-to-female aggression was the most common agonistic interaction, and same-sex aggressions were almost absent. We found no significant differences in rates of grooming or embracing between the different types of dyads. The resemblance of our results to those of similar studies in less disturbed habitats suggests that spider monkeys might adapt to certain levels of ecological and social disturbance, at least initially, and are a starting point to understand better the initial effects of fragmentation on the behavioral repertoire of these primates.     

The stress-response factor SigH modulates the interaction between Mycobacterium tuberculosis and host phagocytes

The Mycobacterium tuberculosis stress response factor SigH plays a crucial role in modulating the pathogen's response to heat, oxidative-stress, envelope damage and hypoxia. We hypothesized that the lack of this key stress response factor would alter the interaction between the pathogen and its host cells. We compared the interaction of Mtb, Mtb:Δ-sigH and a strain where the mutation had been genetically complemented (Mtb: Δ-sigH:CO) with primary rhesus macaque bone marrow derived macrophages (Rh-BMDMs). The expression of numerous inducible and homeostatic (CCL) β-chemokines and several apoptotic markers was induced to higher levels in the cells infected with Mtb:Δ-sigH, relative to Mtb or the complemented strain. The differential expression of these genes manifested into functional differences in chemotaxis and apoptosis in cells infected with these two strains. The mutant strain also exhibited reduced late-stage survival in Rh-BMDMs. We hypothesize that the product of one or more SigH-dependent genes may modulate the innate interaction of Mtb with host cells, effectively reducing the chemokine-mediated recruitment of immune effector cells, apoptosis of infected monocytes and enhancing the long-term survival and replication of the pathogen in this milieu The significantly higher induction of Prostaglandin Synthetase 2 (PTGS2 or COX2) in Rh-BMDMs infected with Mtb relative to Mtb: Δ-sigH may explain reduced apoptosis in Mtb-infected cells, as PTGS2 is known to inhibit p53-dependent apoptosis.The SigH-regulon modulates the innate interaction of Mtb with host phagocytes, perhaps as part of a strategy to limit its clearance and prolong its survival. The SigH regulon appears to be required to modulate innate immune responses directed against Mtb.     

Mexican Bark Paper: Evidence of History of Tree Species Used and Their Fiber Characteristics

Mexican Bark Paper: Evidence of History of Tree Species Used and Their Fiber Characteristics. The use of bark fibers (secondary phloem) for the manufacture of the Mexican bark paper called amate can be traced back to the pre–Hispanic period. This paper was used extensively during this period, and for the last four decades has been produced as a handicraft by the Ñahñus of San Pablito village in the Sierra Norte de Puebla region of México. Due to the high demand for this product, new species are now used as a source of bark and specific phases of the traditional production technique have been modified. The focus of this study was to register all the species that have been used for bark paper manufacturing, both traditionally and more recently, and to analyze their fiber characteristics, mainly fiber length and lignin content. The main questions addressed by this study were: a) Which species have been used for bark paper production, both prior to and following its commercialization as a handicraft? b) Which anatomical and histochemical fiber characteristics of these species enable their use for bark paper production, regardless of taxa? And c) is there a relationship between the adoption and use of new species and recent changes in traditional paper making techniques? Based on an ethnobotanical study, a list of 13 species used for bark paper production was compiled and bark samples from each species were collected for phloem anatomical and histochemical analysis. Artisans and local healers were also asked to determine the main characteristics of each fiber and paper type. The results demonstrate that bark from currently used species differs anatomically and histochemically from species used during the pre–Hispanic period and until a few decades ago, and in terms of the quality assessed by local healers and artisans. Among other characteristics, the fibers of the new species have higher lignin content than the traditional ones, and this constitutes the main reason behind the modification of certain phases of the traditional paper making process.     

Evaluation of different culture media for the isolation and growth of the fastidious Vibrio tapetis, the causative agent of brown ring disease

Thirteen culture media were evaluated at two temperatures for the growth and isolation of Vibrio tapetis. The bacterium showed similar growth dynamics at 15°C or 25°C, being faster at 15°C regardless the general media employed. Best growth of V. tapetis was obtained on Agar Seawater (ASWT) (1.7×10(6)cfu/ml), Mannitol Marine Agar (MMA) (2.6×10(6)cfu/ml), and Mannitol Trypticase Soy Agar (MTSA-1) (1.9×10(6)cfu/ml), being slightly lower on Marine Agar (MA) (5.0×10(5)cfu/ml). Growth was poor on TCBS and nule in the other media containing bile salts, indicating their inhibitory effect on the V. tapetis growth. Recovery of V. tapetis from mixed Vibrio populations, differing in acid production from sucrose and mannitol, was only possible using the selective medium MMA at both temperatures. The use of ASWT or MA at 15°C for the routinary growth of V. tapetis, and MMA for isolation of V. tapetis from bivalve samples is recommended.     

Carcases and mites

Mites are involved in the decomposition of animal carcases and human corpses at every stage. From initial decay at the fresh stage until dry decomposition at the skeletal stage, a huge diversity of Acari, including members of the Mesostigmata, Prostigmata, Astigmata, Endeostigmata, Oribatida and Ixodida, are an integral part of the constantly changing food webs on, in and beneath the carrion. During the desiccation stage in wave 6 of Mégnin’s system, mites can become the dominant fauna on the decomposing body. Under conditions unfavourable for the colonisation of insects, such as concealment, low temperature or mummification, mites might become the most important or even the only arthropods on a dead body. Some mite species will be represented by a few specimens, whereas others might build up in numbers to several million individuals. Astigmata are most prominent in numbers and Mesostigmata in diversity. More than 100 mite species and over 60 mite families were collected from animal carcases, and around 75 species and over 20 families from human corpses.