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271.
The clingfish Apletodon barbatus sp. nov. is described on the basis of 22 specimens and color photos from Santiago and Sal Islands, Cape Verde Islands, eastern
central Atlantic Ocean. The species is very small, apparently not exceeding 18 mm total length; it is characterized by having
a conspicuous maxillary barbel in males, 4–5 incisors in the upper jaw, numerous brown spots on the head and body in males,
and a double white spot near the anus. The new species is compared with other species of the genus; a key to the males of
the 5 known species of the eastern Atlantic genus Apletodon is presented. A checklist is provided for the species of Apletodon and their synonyms. Several new records are included in the present paper: Apletodon dentatus and A. incognitus are recorded from the Canary Islands, and A. wirtzi is recorded from Cameroon. 相似文献
272.
Alfonso Gautieri Simone Vesentini Alberto Redaelli 《Journal of molecular modeling》2010,16(12):1845-1851
The normal diffusion regime of many small and medium-sized molecules occurs on a time scale that is too long to be studied
by atomistic simulations. Coarse-grained (CG) molecular simulations allow to investigate length and time scales that are orders
of magnitude larger compared to classical molecular dynamics simulations, hence providing a valuable approach to span time
and length scales where normal diffusion occurs. Here we develop a novel multi-scale method for the prediction of diffusivity
in polymer matrices which combines classical and CG molecular simulations. We applied an atomistic-based method in order to
parameterize the CG MARTINI force field, providing an extension for the study of diffusion behavior of penetrant molecules
in polymer matrices. As a case study, we found the parameters for benzene (as medium sized penetrant molecule whose diffusivity
cannot be determined through atomistic models) and Poly (vinyl alcohol) (PVA) as polymer matrix. We validated our extended
MARTINI force field determining the self diffusion coefficient of benzene (2.27·10−9 m2 s−1) and the diffusion coefficient of benzene in PVA (0.263·10−12 m2 s−1). The obtained diffusion coefficients are in remarkable agreement with experimental data (2.20·10−9 m2 s−1 and 0.25·10−12 m2 s−1, respectively). We believe that this method can extend the application range of computational modeling, providing modeling
tools to study the diffusion of larger molecules and complex polymeric materials. 相似文献
273.
Chegaev K Lazzarato L Tron GC Marabello D Stilo AD Cena C Fruttero R Gasco A Vanthuyne N Roussel C 《Chirality》2006,18(6):430-436
As an introductory study of in vitro vasodilating activity, the access to the four stereomers of 1-phenylglyceryl trinitrate is described using achiral and chiral chromatography. For semi-preparative separation of the enantiomers, a Chiralcel OD (250 x 10 mm, 10 microm) was used. Catalytic reduction leading to the corresponding stereomers of 1-phenylglycerol allowed absolute configuration assignments. The same methods were used for the separation and configuration assignment of the enantiomers of 3-phenylpropane-1,2-diyl dinitrate. 相似文献
274.
Liselotte Aristimuño Raimond Armengol Alberto Cebollada Mercedes España Alexis Guilarte Carmen Lafoz María A Lezcano María J Revillo Carlos Martín Carmen Ramírez Nalin Rastogi Janet Rojas Albina Vázques de Salas Christophe Sola Sofía Samper 《BMC microbiology》2006,6(1):1-12
Background
Molecular typing of Mycobacterium tuberculosis strains has become a valuable tool in the epidemiology of tuberculosis (TB) by allowing detection of outbreaks, tracking of epidemics, identification of genotypes and transmission events among patients who would have remained undetected by conventional contact investigation. This is the first genetic biodiversity study of M. tuberculosis in Venezuela. Thus, we investigated the genetic patterns of strains isolated in the first survey of anti-tuberculosis drug-resistance realised as part of the Global Project of Anti-tuberculosis Drug Resistance Surveillance (WHO/IUATLD).Results
Clinical isolates (670/873) were genotyped by spoligotyping. The results were compared with the international spoligotyping database (SpolDB4). Multidrug resistant (MDR) strains (14/18) were also analysed by IS6110-RFLP assays, and resistance to isoniazid and rifampicin was characterised. Spoligotyping grouped 82% (548/670) of the strains into 59 clusters. Twenty new spoligotypes (SITs) specific to Venezuela were identified. Eight new inter-regional clusters were created. The Beijing genotype was not found. The genetic network shows that the Latin American and Mediterranean family constitutes the backbone of the genetic TB population-structure in Venezuela, responsible of >60% of total TB cases studied. MDR was 0.5% in never treated patients and 13.5% in previously treated patients. Mutations in rpoB gene and katG genes were detected in 64% and 43% of the MDR strains, respectively. Two clusters were found to be identical by the four different analysis methods, presumably representing cases of recent transmission of MDR tuberculosis.Conclusion
This study gives a first overview of the M. tuberculosis strains circulating in Venezuela during the first survey of anti-tuberculosis drug-resistance. It may aid in the creation of a national database that will be a valuable support for further studies. 相似文献275.
Bioremediation strategies use microorganisms to remove hazardous substances, such as aromatic molecules, from polluted sites. The applicability of these techniques would greatly benefit from the expansion of the catabolic ability of these bacteria in transforming a variety of aromatic compounds. Catechol-2,3-dioxygenase (C2,3O) from Pseudomonas stutzeri OX1 is a key enzyme in the catabolic pathway for aromatic molecules. Its specificity and regioselectivity control the range of molecules degraded through the catabolic pathway of the microorganism that is able to use aromatic hydrocarbons as growth substrates. We have used in silico substrate docking procedures to investigate the molecular determinants that direct the enzyme substrate specificity. In particular, we looked for a possible molecular explanation of the inability of catechol-2,3-dioxygenase to cleave 3,5-dimethylcatechol and 3,6-dimethylcatechol and of the efficient cleavage of 3,4-dimethylcatechol. The docking study suggested that reduction in the volume of the side chain of residue 249 could allow the binding of 3,5-dimethylcatechol and 3,6-dimethylcatechol. This information was used to prepare and characterize mutants at position 249. The kinetic and regiospecificity parameters of the mutants confirm the docking predictions, and indicate that this position controls the substrate specificity of catechol-2,3-dioxygenase. Moreover, our results suggest that Thr249 also plays a previously unsuspected role in the catalytic mechanism of substrate cleavage. The hypothesis is advanced that a water molecule bound between one of the hydroxyl groups of the substrate and the side chain of Thr249 favors the deprotonation/protonation of this hydroxyl group, thus assisting the final steps of the cleavage reaction. 相似文献
276.
Carbon concentration and oxygen availability affect lipid and carotenoid production by carob pulp syrup‐grown Rhodosporidium toruloides NCYC 921 下载免费PDF全文
Teresa Margarida Parreira Claudia Freitas Alberto Reis José Roseiro Teresa Lopes da Silva 《Engineering in Life Science》2015,15(8):815-823
The simultaneous effect of oxygen availability and carbon source concentration on yeast lipid and carotenoid production has never been studied before. In this work, a Doehlert distribution design was used to study the simultaneous effect of carbon concentration and oxygen availability on Rhodosporidium toruloides NCYC 921 carotenoid and lipid production. A cheap industrial byproduct was used as carbon source (carob pulp syrup). A total sugar concentration of 106.3 g/L and a medium volume of 0.120 L induced the highest total carotenoid and total fatty acid productivities (4.60 μg/Lh and 0.029 g/Lh, respectively). Flow cytometry was used to assess yeast stress response under different cultivation conditions. The highest proportion of cells with permeabilised membrane (>20%) was induced when the cultivations were carried out at the highest sugar concentration studied (130.0 g/L) or when the culture reached the minimum final medium pH (4.60). The results showed that the total sugar concentration had a positive influence on the yeast biomass and carotenoid content, while the oxygen availability had little influence on the biomass concentration, but had a slight positive influence on the carotenoid content. Regarding the fatty acids, the two factors had a negative impact on the synthesis of these compounds. 相似文献
277.
Sara Garcia‐Serrano Carolina Gutiérrez‐Repiso Montserrat Gonzalo Juan Garcia‐Arnes Sergio Valdes Federico Soriguer Vidal Perez‐Valero Miguel A. Alaminos‐Castillo Juan Francisco Cobos‐Bravo Francisco J. Moreno‐Ruiz Alberto Rodriguez‐Cañete Francisca Rodríguez‐Pacheco Eva Garcia‐Escobar Eduardo García‐Fuentes 《Obesity (Silver Spring, Md.)》2015,23(8):1607-1615
278.
Virulence genes and intimin types of Shiga-toxin-producing Escherichia coli isolated from cattle and beef products in Argentina. 总被引:4,自引:0,他引:4
Miguel Blanco Nora L Padola Alejandra Krüger Marcelo E Sanz Jesús E Blanco Enrique A González Ghizlane Dahbi Azucena Mora María Isabel Bernárdez Analía I Etcheverría Guillermo H Arroyo Paula M A Lucchesi Alberto E Parma Jorge Blanco 《International microbiology》2004,7(4):269-276
A total of 153 Shiga-toxin-producing Escherichia coli (STEC) isolates from feces of cattle and beef products (hamburgers and ground beef) in Argentina were characterized in this study. PCR showed that 22 (14%) isolates carried stx1 genes, 113 (74%) possessed stx2 genes and 18 (12%) both stx1 and stx2. Intimin (eae), enterohemolysin (ehxA), and STEC autoagglutinating adhesin (saa) virulence genes were detected in 36 (24%), 70 (46%) and in 34 (22%) of the isolates, respectively. None of 34 saa-positive isolates carried the gene eae, and 31 were ehxA-positive. Fourteen (7 of serotype O26:H11 and 4 of serotype O5:H-) isolates had intimin b1, 16 isolates possessed intimin g1 (11 of serotype O145:H- and 5 of serotype O157:H7), 5 isolates had intimin type e1 (4 of serotypes O103:H- and O103:H2), and one isolate O111:H- showed intimin type q/g2. Although the 153 STEC isolates belonged to 63 different seropathotypes, only 12 accounted for 58% of isolates. Seropathotype ONT:H- stx2 (18 isolates) was the most common, followed by O171:H2 stx2 (12 isolates), etc. The majority (84%) of STEC isolates belonged to serotypes previously found in human STEC and 56% to serotypes associated with STEC isolated from patients with hemolytic uremic syndrome (HUS). Thus, this study confirms that cattle are a major reservoir of STEC pathogenic for humans. To our knowledge, this is the first study that described the presence of saa gene in STEC of serotypes O20:H19, O39:H49, O74:H28, O79:H19, O116:H21, O120:H19, O141:H7, O141:H8, O174:H21, and ONT:H21. The serotypes O120:H19 and O185:H7 were not previously reported in bovine STEC. 相似文献
279.
1. Vertical transport of nutrients in sedimenting faecal material is greatly reduced by coprophageous organisms. Unfortunately, nearly all work on faecal production, sedimentation and coprophagy has dealt with copepods in marine ecosystems. Here, we report the first evidence of coprophagy in freshwater zooplankton from oligotrophic and eutrophic lakes. We used 14C‐labelled algae and faecal material to estimate the rates of algal clearance and coprophagy. 2. Measured feeding rates per individual on faecal material were similar (Daphnia pulex, D. rosea, Leptodiaptomus tyrelli) or even higher (D. lumholtzi) than filtering rates on phytoplankton. This finding does not necessarily implicate active selection of faeces over algae because: (i) we did not use the same food concentrations for faeces and algae, and (ii) grazers of slightly different sizes were used in each test. 3. Weight‐specific clearance rates of L. tyrelli and Holopedium gibberum on faecal matter (0.084–0.089 mL μg?1 h?1) were higher than in the daphniids (0.026 mL μg?1 h?1). 4. The data indicate that coprophagy in freshwater ecosystems is an important mechanism of nutrient recycling, and this process should be taken into account when studying nutrient fluxes within lakes and reservoirs. 相似文献
280.
Trucco A Polishchuk RS Martella O Di Pentima A Fusella A Di Giandomenico D San Pietro E Beznoussenko GV Polishchuk EV Baldassarre M Buccione R Geerts WJ Koster AJ Burger KN Mironov AA Luini A 《Nature cell biology》2004,6(11):1071-1081
The organization of secretory traffic remains unclear, mainly because of the complex structure and dynamics of the secretory pathway. We have thus studied a simplified system, a single synchronized traffic wave crossing an individual Golgi stack, using electron tomography. Endoplasmic-reticulum-to-Golgi carriers join the stack by fusing with cis cisternae and induce the formation of intercisternal tubules, through which they redistribute their contents throughout the stack. These tubules seem to be pervious to Golgi enzymes, whereas Golgi vesicles are depleted of both enzymes and cargo. Cargo then traverses the stack without leaving the cisternal lumen. When cargo exits the stack, intercisternal connections disappear. These findings provide a new view of secretory traffic that includes dynamic intercompartment continuities as key players. 相似文献